Wall clock time and date at job start Fri Apr 10 2020 21:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00154 * 2 1 4 4 H 1.48497 * 109.47317 * 269.99897 * 3 2 1 5 5 H 1.48496 * 109.47241 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47292 * 149.99905 * 3 2 1 7 7 C 1.38803 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99987 * 359.97438 * 7 2 1 9 9 S 1.76194 * 119.99971 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47124 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47227 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47261 * 180.02562 * 12 11 10 14 14 C 1.47844 * 110.99713 * 285.12219 * 13 12 11 15 15 C 1.54908 * 104.79460 * 213.64010 * 14 13 12 16 16 C 1.55135 * 101.65337 * 37.07192 * 15 14 13 17 17 C 1.47447 * 110.99908 * 164.28257 * 13 12 11 18 18 H 1.08997 * 109.88825 * 242.66001 * 17 13 12 19 19 C 1.50701 * 109.88879 * 3.68835 * 17 13 12 20 20 C 1.38272 * 119.94338 * 244.58202 * 19 17 13 21 21 C 1.38139 * 120.05605 * 179.72417 * 20 19 17 22 22 C 1.38729 * 119.94564 * 0.57027 * 21 20 19 23 23 O 1.35903 * 120.05889 * 179.68359 * 22 21 20 24 24 C 1.38732 * 119.88647 * 359.70336 * 22 21 20 25 25 C 1.38145 * 119.94660 * 359.97438 * 24 22 21 26 26 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47065 * 59.99763 * 10 9 7 28 28 H 1.09003 * 109.46814 * 299.99575 * 10 9 7 29 29 H 1.09005 * 109.47343 * 59.99930 * 11 10 9 30 30 H 1.08999 * 109.47166 * 299.99959 * 11 10 9 31 31 H 1.09003 * 109.46710 * 299.99568 * 12 11 10 32 32 H 1.08995 * 109.47065 * 59.99693 * 12 11 10 33 33 H 1.08998 * 110.37092 * 332.46783 * 14 13 12 34 34 H 1.09001 * 110.37099 * 94.80975 * 14 13 12 35 35 H 1.09005 * 110.98588 * 278.97690 * 15 14 13 36 36 H 1.09001 * 110.99096 * 155.16319 * 15 14 13 37 37 H 1.09002 * 110.70325 * 205.96571 * 16 15 14 38 38 H 1.08996 * 110.85822 * 82.80105 * 16 15 14 39 39 H 1.07998 * 119.97024 * 359.97438 * 20 19 17 40 40 H 1.08000 * 120.03234 * 180.29716 * 21 20 19 41 41 H 0.96704 * 113.99176 * 270.01887 * 23 22 21 42 42 H 1.08003 * 120.03023 * 180.02562 * 24 22 21 43 43 H 1.07997 * 119.97406 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5956 -3.2364 0.0021 12 6 5.8613 -4.7432 0.0012 13 7 7.3103 -4.9849 0.0030 14 6 7.8939 -4.7158 -1.3285 15 6 9.0470 -5.7406 -1.4694 16 6 8.4436 -6.9890 -0.7736 17 6 7.6129 -6.3792 0.3751 18 1 8.1887 -6.3994 1.3004 19 6 6.3315 -7.1523 0.5520 20 6 5.9937 -7.6533 1.7957 21 6 4.8169 -8.3574 1.9616 22 6 3.9793 -8.5719 0.8767 23 8 2.8241 -9.2698 1.0360 24 6 4.3232 -8.0730 -0.3713 25 6 5.4979 -7.3638 -0.5307 26 1 -0.4850 0.8401 -0.0004 27 1 3.6439 -3.4315 -0.8893 28 1 3.6433 -3.4318 0.8907 29 1 6.0379 -2.7896 0.8926 30 1 6.0393 -2.7891 -0.8874 31 1 5.4176 -5.1908 0.8906 32 1 5.4191 -5.1895 -0.8894 33 1 7.1487 -4.8734 -2.1082 34 1 8.2826 -3.6985 -1.3738 35 1 9.9406 -5.3968 -0.9485 36 1 9.2624 -5.9442 -2.5184 37 1 9.2326 -7.6301 -0.3804 38 1 7.8037 -7.5442 -1.4593 39 1 6.6486 -7.4906 2.6389 40 1 4.5511 -8.7445 2.9342 41 1 2.9184 -10.2226 0.9000 42 1 3.6726 -8.2382 -1.2175 43 1 5.7663 -6.9756 -1.5021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610412571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:22 Heat of formation + Delta-G solvation = -21.411040 kcal Electronic energy + Delta-G solvation = -22785.125766 eV Core-core repulsion = 19535.112032 eV Total energy + Delta-G solvation = -3250.013734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79279 -38.94325 -36.55719 -34.30761 -32.39171 -31.40822 -31.23708 -30.51417 -27.43860 -25.81734 -25.19106 -23.22082 -22.66102 -21.87332 -20.74559 -19.91514 -18.61384 -17.42345 -16.64393 -16.34819 -15.67563 -15.40996 -15.12774 -14.99398 -14.90029 -14.17317 -13.95400 -13.80734 -13.64445 -13.32005 -12.95187 -12.77910 -12.51442 -12.16480 -12.08275 -11.74430 -11.55913 -11.40913 -11.32677 -11.19651 -11.01619 -10.97070 -10.90775 -10.60892 -10.31788 -10.06934 -9.72564 -9.17657 -8.96062 -8.70194 -8.50286 -8.30470 -6.88596 -6.23784 -3.95403 0.98115 1.15549 3.05252 3.33124 3.34561 3.49414 3.61271 3.99087 4.03237 4.33288 4.35982 4.44175 4.54445 4.70779 4.76911 4.86837 4.93070 5.12562 5.14909 5.20315 5.23659 5.28570 5.38761 5.49780 5.56739 5.60959 5.64729 5.69622 5.74373 5.81103 5.83694 5.89609 5.98542 6.05760 6.10601 6.23486 6.30525 6.38726 6.55642 6.58565 6.72088 6.92943 7.04963 7.45146 8.00158 8.49649 9.22258 10.85874 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003668 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.431303 B = 7631.583465 C = 9237.977376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.501 4.501 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.080 4.080 11 C -0.095 4.095 12 C 0.052 3.948 13 N -0.516 5.516 14 C 0.038 3.962 15 C -0.129 4.129 16 C -0.135 4.135 17 C 0.111 3.889 18 H 0.093 0.907 19 C -0.101 4.101 20 C -0.094 4.094 21 C -0.144 4.144 22 C 0.104 3.896 23 O -0.498 6.498 24 C -0.143 4.143 25 C -0.093 4.093 26 H 0.270 0.730 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.388 0.612 42 H 0.128 0.872 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.574 -20.090 -0.772 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.649 4.649 8 H 0.105 0.895 9 S 0.012 5.988 10 C -0.229 4.229 11 C -0.134 4.134 12 C -0.077 4.077 13 N -0.239 5.239 14 C -0.090 4.090 15 C -0.167 4.167 16 C -0.174 4.174 17 C 0.003 3.997 18 H 0.111 0.889 19 C -0.103 4.103 20 C -0.113 4.113 21 C -0.162 4.162 22 C 0.059 3.941 23 O -0.308 6.308 24 C -0.161 4.161 25 C -0.112 4.112 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.243 0.757 42 H 0.146 0.854 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.096 -18.191 -0.281 25.660 hybrid contribution -1.202 -1.202 -0.692 1.835 sum 16.894 -19.393 -0.972 25.738 Atomic orbital electron populations 1.69944 1.05938 1.27634 1.48492 1.24793 0.94490 0.98973 0.93385 0.86670 0.81801 0.83223 0.79661 1.19417 1.20136 1.16124 1.22144 0.87191 0.97392 1.58150 0.89485 1.84116 1.11548 1.05583 1.97517 1.22998 0.97495 0.98936 1.03466 1.21297 0.94571 0.94436 1.03053 1.22647 0.86895 0.97058 1.01140 1.63875 1.13198 1.19893 1.26963 1.23161 0.95930 1.00155 0.89715 1.22718 0.98483 0.94852 1.00696 1.22922 0.99419 0.97877 0.97153 1.21480 0.92153 0.86597 0.99425 0.88930 1.20176 0.97543 0.98811 0.93721 1.20924 0.96402 0.97200 0.96742 1.21407 0.94283 1.01528 0.99001 1.18490 0.86165 0.96950 0.92479 1.84878 1.29537 1.23301 1.93055 1.21399 0.97227 1.00366 0.97112 1.20878 0.94046 0.97583 0.98679 0.92034 0.91810 0.91543 0.90853 0.91820 0.90462 0.93957 0.93430 0.89809 0.90546 0.90843 0.90682 0.91065 0.85441 0.85400 0.75695 0.85396 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.41 13.97 55.49 0.78 -26.64 16 2 C 0.09 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 22.05 27.74 -169.99 -4.72 17.33 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.50 -15.01 10.04 30.94 0.31 -14.70 16 8 H 0.09 2.78 8.03 -52.48 -0.42 2.36 16 9 S -0.22 -5.45 19.41 -107.50 -2.09 -7.54 16 10 C -0.08 -1.64 5.67 37.16 0.21 -1.43 16 11 C -0.09 -1.57 5.33 -26.73 -0.14 -1.71 16 12 C 0.05 0.71 3.43 -3.82 -0.01 0.70 16 13 N -0.52 -6.10 5.12 -224.72 -1.15 -7.25 16 14 C 0.04 0.39 6.07 -2.30 -0.01 0.38 16 15 C -0.13 -1.03 7.08 -24.59 -0.17 -1.20 16 16 C -0.14 -1.07 6.34 -24.91 -0.16 -1.23 16 17 C 0.11 1.09 3.63 -67.88 -0.25 0.84 16 18 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 19 C -0.10 -1.05 2.98 -104.60 -0.31 -1.36 16 20 C -0.09 -0.95 9.54 -39.61 -0.38 -1.32 16 21 C -0.14 -1.50 9.99 -39.44 -0.39 -1.89 16 22 C 0.10 1.16 6.70 -39.22 -0.26 0.90 16 23 O -0.50 -5.20 13.50 -19.44 -0.26 -5.46 16 24 C -0.14 -1.57 9.99 -39.43 -0.39 -1.97 16 25 C -0.09 -1.00 6.32 -39.61 -0.25 -1.25 16 26 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 28 H 0.07 1.40 8.14 -51.91 -0.42 0.98 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 31 H 0.08 1.15 6.47 -51.93 -0.34 0.81 16 32 H 0.04 0.58 5.36 -51.93 -0.28 0.30 16 33 H 0.05 0.51 7.53 -51.93 -0.39 0.11 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.57 6.60 -51.93 -0.34 0.22 16 39 H 0.13 1.06 7.96 -52.49 -0.42 0.64 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.39 1.94 9.06 45.56 0.41 2.36 16 42 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.12 1.23 6.76 -52.49 -0.35 0.88 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -33.58 354.11 -10.32 -43.90 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.90 Total: 2.92 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.31 Total: -22.59 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: -0.38 Total: -33.89 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.26 Total: -5.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -2.09 Total: -7.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.58 -10.32 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610412571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.486 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds