Wall clock time and date at job start Fri Apr 10 2020 21:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46970 * 2 1 4 4 C 1.34773 * 119.99939 * 272.25125 * 3 2 1 5 5 O 1.21600 * 120.00105 * 186.07419 * 4 3 2 6 6 C 1.47487 * 120.00058 * 6.07490 * 4 3 2 7 7 C 1.37810 * 126.77616 * 8.39634 * 6 4 3 8 8 O 1.33493 * 108.34593 * 179.86752 * 7 6 4 9 9 C 1.34881 * 109.88906 * 0.41221 * 8 7 6 10 10 C 1.46775 * 125.65554 * 179.74621 * 9 8 7 11 11 N 1.34774 * 119.99964 * 359.97438 * 10 9 8 12 12 O 1.21686 * 119.99891 * 179.97438 * 10 9 8 13 13 C 1.36064 * 108.68936 * 359.74614 * 9 8 7 14 14 C 1.46498 * 119.99786 * 92.26008 * 3 2 1 15 15 C 1.53505 * 114.20288 * 231.38370 * 14 3 2 16 16 N 1.47064 * 87.98350 * 220.14802 * 15 14 3 17 17 C 1.36938 * 136.05426 * 207.07803 * 16 15 14 18 18 H 1.08003 * 120.00149 * 354.58930 * 17 16 15 19 19 C 1.38812 * 120.00057 * 174.57871 * 17 16 15 20 20 N 1.31620 * 119.99954 * 183.29120 * 19 17 16 21 21 Si 1.86796 * 119.99854 * 3.29839 * 19 17 16 22 22 H 1.48498 * 109.47165 * 174.43231 * 21 19 17 23 23 H 1.48506 * 109.47315 * 294.43212 * 21 19 17 24 24 H 1.48500 * 109.47236 * 54.43027 * 21 19 17 25 25 C 1.47058 * 87.88553 * 27.34511 * 16 15 14 26 26 H 1.09001 * 109.47528 * 300.00355 * 1 2 3 27 27 H 1.09008 * 109.47124 * 60.00207 * 1 2 3 28 28 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47119 * 239.99644 * 2 1 3 30 30 H 1.09007 * 109.46627 * 119.99632 * 2 1 3 31 31 H 1.08008 * 125.82173 * 359.97438 * 7 6 4 32 32 H 0.96997 * 120.00228 * 359.97438 * 11 10 9 33 33 H 0.97000 * 119.99768 * 180.02562 * 11 10 9 34 34 H 1.08000 * 126.68538 * 180.02562 * 13 9 8 35 35 H 1.08997 * 113.28645 * 4.44817 * 14 3 2 36 36 H 1.08999 * 113.46710 * 105.36606 * 15 14 3 37 37 H 1.09005 * 113.46218 * 334.92992 * 15 14 3 38 38 H 0.96993 * 120.00026 * 5.01854 * 20 19 17 39 39 H 1.08993 * 113.47149 * 87.43946 * 25 16 15 40 40 H 1.09006 * 113.46235 * 217.87807 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1996 2.0318 -1.1663 5 8 2.7081 3.1364 -1.1736 6 6 1.7814 1.4041 -2.4337 7 6 1.0532 0.2431 -2.5785 8 8 0.8805 0.0153 -3.8824 9 6 1.4806 0.9861 -4.6013 10 6 1.5097 1.0721 -6.0662 11 7 0.9011 0.1264 -6.8090 12 8 2.0834 1.9972 -6.6101 13 6 2.0545 1.8725 -3.7432 14 6 2.3096 2.0551 1.2678 15 6 1.6401 3.4282 1.4190 16 7 2.8849 3.9093 2.0368 17 6 3.2268 4.8835 2.9364 18 1 2.4776 5.5734 3.2960 19 6 4.5361 4.9842 3.3863 20 7 4.8512 5.8784 4.2992 21 14 5.8506 3.8508 2.6960 22 1 7.1771 4.2458 3.2341 23 1 5.5536 2.4502 3.0903 24 1 5.8663 3.9553 1.2147 25 6 3.6018 2.8882 1.2582 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 0.6837 -0.3758 -1.7741 32 1 0.4441 -0.6112 -6.3754 33 1 0.9207 0.1831 -7.7771 34 1 2.6095 2.7602 -4.0083 35 1 2.1988 1.4059 2.1362 36 1 0.7902 3.4239 2.1014 37 1 1.4143 3.9082 0.4667 38 1 4.1573 6.4171 4.7104 39 1 3.8932 3.2259 0.2637 40 1 4.4233 2.4239 1.8039 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950975275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:52 Heat of formation + Delta-G solvation = 50.258072 kcal Electronic energy + Delta-G solvation = -25562.691579 eV Core-core repulsion = 21769.492436 eV Total energy + Delta-G solvation = -3793.199143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.20372 -40.38375 -39.52217 -37.39687 -36.15037 -34.26409 -33.29880 -32.34970 -31.00293 -30.05432 -27.69139 -25.28375 -24.63911 -24.06043 -23.40329 -22.16388 -21.12476 -20.18215 -19.36643 -18.11771 -17.51554 -17.44200 -17.22188 -16.83841 -16.34575 -15.75335 -15.19603 -15.03099 -14.75829 -14.73761 -13.93360 -13.76488 -13.54781 -13.42561 -13.25314 -13.06139 -12.73614 -12.45051 -12.14061 -11.77794 -11.70956 -11.26179 -11.18616 -10.86051 -10.63719 -10.31350 -10.25647 -10.21935 -9.62827 -9.26215 -9.05940 -8.98632 -8.81127 -8.33502 -7.00235 -6.23127 -3.13968 0.59795 1.37382 2.20716 2.73726 2.80899 3.16686 3.27766 3.45441 3.57749 3.74687 4.17231 4.22253 4.48103 4.51637 4.67923 4.74845 4.90518 4.99206 5.04510 5.19302 5.23892 5.32372 5.37911 5.42291 5.50764 5.61519 5.85278 5.87527 6.03617 6.14244 6.30508 6.33786 6.38654 6.39885 6.63210 6.83183 7.16947 7.23198 7.47126 7.68669 8.28742 8.30796 9.05793 9.58135 10.45395 11.29009 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.003627 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.828119 B = 7718.923362 C = 8413.275419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.083 3.917 3 N -0.596 5.596 4 C 0.578 3.422 5 O -0.503 6.503 6 C -0.229 4.229 7 C 0.011 3.989 8 O -0.157 6.157 9 C -0.098 4.098 10 C 0.612 3.388 11 N -0.845 5.845 12 O -0.518 6.518 13 C -0.058 4.058 14 C 0.099 3.901 15 C 0.118 3.882 16 N -0.621 5.621 17 C -0.296 4.296 18 H 0.082 0.918 19 C -0.025 4.025 20 N -0.937 5.937 21 Si 1.074 2.926 22 H -0.297 1.297 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.075 3.925 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.248 0.752 32 H 0.407 0.593 33 H 0.409 0.591 34 H 0.172 0.828 35 H 0.117 0.883 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.260 0.740 39 H 0.084 0.916 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -21.655 -17.774 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.040 4.040 3 N -0.329 5.329 4 C 0.366 3.634 5 O -0.378 6.378 6 C -0.234 4.234 7 C -0.060 4.060 8 O -0.051 6.051 9 C -0.150 4.150 10 C 0.397 3.603 11 N -0.408 5.408 12 O -0.395 6.395 13 C -0.079 4.079 14 C -0.004 4.004 15 C -0.010 4.010 16 N -0.349 5.349 17 C -0.422 4.422 18 H 0.099 0.901 19 C -0.223 4.223 20 N -0.580 5.580 21 Si 0.908 3.092 22 H -0.224 1.224 23 H -0.223 1.223 24 H -0.214 1.214 25 C -0.051 4.051 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.263 0.737 32 H 0.236 0.764 33 H 0.241 0.759 34 H 0.189 0.811 35 H 0.135 0.865 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.437 -20.730 -17.883 29.300 hybrid contribution -1.983 0.068 -0.079 1.986 sum -12.420 -20.662 -17.962 30.064 Atomic orbital electron populations 1.22591 0.95965 1.02883 1.04115 1.22051 0.94317 0.83630 1.04021 1.47839 1.65534 1.13392 1.06143 1.17252 0.78946 0.85203 0.81989 1.90841 1.41515 1.19417 1.86074 1.20891 1.08140 0.98979 0.95342 1.27006 0.97990 0.97740 0.83264 1.83931 1.59479 1.43827 1.17898 1.21788 1.07431 0.93361 0.92371 1.16496 0.78420 0.82222 0.83201 1.43660 1.57891 1.28246 1.11031 1.90967 1.44087 1.33455 1.70973 1.21957 0.97002 0.99242 0.89689 1.23717 0.99827 0.93183 0.83676 1.22664 0.91288 0.90397 0.96671 1.45771 1.02889 1.39690 1.46529 1.20137 0.97300 1.08389 1.16368 0.90064 1.25689 0.97130 1.01042 0.98461 1.70924 1.35119 1.24060 1.27883 0.83653 0.75739 0.74155 0.75653 1.22438 1.22292 1.21387 1.23574 0.94091 0.89472 0.97920 0.90459 0.91477 0.90686 0.89875 0.88996 0.73742 0.76443 0.75889 0.81084 0.86533 0.94043 0.93267 0.93037 0.89902 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 8.72 37.16 0.32 -0.85 16 2 C 0.08 0.66 5.62 -4.04 -0.02 0.64 16 3 N -0.60 -8.19 2.76 -166.97 -0.46 -8.65 16 4 C 0.58 9.19 7.11 -12.49 -0.09 9.10 16 5 O -0.50 -10.50 12.52 5.28 0.07 -10.43 16 6 C -0.23 -2.83 5.96 -104.95 -0.63 -3.46 16 7 C 0.01 0.09 8.64 30.58 0.26 0.36 16 8 O -0.16 -1.28 10.33 6.21 0.06 -1.22 16 9 C -0.10 -1.04 7.09 -36.91 -0.26 -1.30 16 10 C 0.61 6.27 8.06 -12.81 -0.10 6.17 16 11 N -0.84 -4.60 8.87 30.28 0.27 -4.33 16 12 O -0.52 -7.37 17.68 5.20 0.09 -7.28 16 13 C -0.06 -0.74 10.42 -39.03 -0.41 -1.15 16 14 C 0.10 1.75 4.80 -67.67 -0.32 1.43 16 15 C 0.12 2.49 8.10 -8.51 -0.07 2.42 16 16 N -0.62 -16.35 3.69 -184.64 -0.68 -17.03 16 17 C -0.30 -8.98 11.09 -15.06 -0.17 -9.15 16 18 H 0.08 2.58 8.05 -52.48 -0.42 2.15 16 19 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 20 N -0.94 -30.66 13.70 55.49 0.76 -29.90 16 21 Si 1.07 28.53 25.08 -169.99 -4.26 24.27 16 22 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 23 H -0.29 -7.21 6.39 56.52 0.36 -6.84 16 24 H -0.29 -7.47 6.65 56.52 0.38 -7.10 16 25 C 0.08 1.73 5.30 -8.39 -0.04 1.69 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.42 5.96 -51.92 -0.31 0.11 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.50 5.08 -51.93 -0.26 0.24 16 30 H 0.09 0.62 7.95 -51.93 -0.41 0.21 16 31 H 0.25 1.20 3.06 -52.48 -0.16 1.04 16 32 H 0.41 1.21 8.57 -40.82 -0.35 0.86 16 33 H 0.41 1.56 8.93 -40.82 -0.36 1.19 16 34 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.12 1.81 7.97 -51.93 -0.41 1.39 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 1.11 6.43 -51.93 -0.33 0.77 16 38 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16 39 H 0.08 2.07 5.20 -51.93 -0.27 1.80 16 40 H 0.05 1.08 3.99 -51.93 -0.21 0.87 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -39.85 323.59 -5.32 -45.17 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.42 Total: -0.50 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.62 Total: 5.02 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.11 Total: -59.91 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.22 Total: -18.93 kcal Atomic # 14 Polarization: 28.53 SS G_CDS: -4.26 Total: 24.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -39.85 -5.32 -45.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950975275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.428 kcal (2) G-P(sol) polarization free energy of solvation -39.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds