Wall clock time and date at job start Fri Apr 10 2020 21:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46970 * 2 1 4 4 C 1.34773 * 119.99939 * 272.25125 * 3 2 1 5 5 O 1.21600 * 120.00105 * 186.07419 * 4 3 2 6 6 C 1.47487 * 120.00058 * 6.07490 * 4 3 2 7 7 C 1.37810 * 126.77616 * 8.39634 * 6 4 3 8 8 O 1.33493 * 108.34593 * 179.86752 * 7 6 4 9 9 C 1.34881 * 109.88906 * 0.41221 * 8 7 6 10 10 C 1.46775 * 125.65554 * 179.74621 * 9 8 7 11 11 N 1.34774 * 119.99964 * 359.97438 * 10 9 8 12 12 O 1.21686 * 119.99891 * 179.97438 * 10 9 8 13 13 C 1.36064 * 108.68936 * 359.74614 * 9 8 7 14 14 C 1.46498 * 119.99786 * 92.26008 * 3 2 1 15 15 C 1.53505 * 114.20288 * 231.38370 * 14 3 2 16 16 N 1.47064 * 87.98350 * 220.14802 * 15 14 3 17 17 C 1.36938 * 136.05426 * 207.07803 * 16 15 14 18 18 H 1.08003 * 120.00149 * 354.58930 * 17 16 15 19 19 C 1.38812 * 120.00057 * 174.57871 * 17 16 15 20 20 N 1.31620 * 119.99954 * 183.29120 * 19 17 16 21 21 Si 1.86796 * 119.99854 * 3.29839 * 19 17 16 22 22 H 1.48498 * 109.47165 * 174.43231 * 21 19 17 23 23 H 1.48506 * 109.47315 * 294.43212 * 21 19 17 24 24 H 1.48500 * 109.47236 * 54.43027 * 21 19 17 25 25 C 1.47058 * 87.88553 * 27.34511 * 16 15 14 26 26 H 1.09001 * 109.47528 * 300.00355 * 1 2 3 27 27 H 1.09008 * 109.47124 * 60.00207 * 1 2 3 28 28 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47119 * 239.99644 * 2 1 3 30 30 H 1.09007 * 109.46627 * 119.99632 * 2 1 3 31 31 H 1.08008 * 125.82173 * 359.97438 * 7 6 4 32 32 H 0.96997 * 120.00228 * 359.97438 * 11 10 9 33 33 H 0.97000 * 119.99768 * 180.02562 * 11 10 9 34 34 H 1.08000 * 126.68538 * 180.02562 * 13 9 8 35 35 H 1.08997 * 113.28645 * 4.44817 * 14 3 2 36 36 H 1.08999 * 113.46710 * 105.36606 * 15 14 3 37 37 H 1.09005 * 113.46218 * 334.92992 * 15 14 3 38 38 H 0.96993 * 120.00026 * 5.01854 * 20 19 17 39 39 H 1.08993 * 113.47149 * 87.43946 * 25 16 15 40 40 H 1.09006 * 113.46235 * 217.87807 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1996 2.0318 -1.1663 5 8 2.7081 3.1364 -1.1736 6 6 1.7814 1.4041 -2.4337 7 6 1.0532 0.2431 -2.5785 8 8 0.8805 0.0153 -3.8824 9 6 1.4806 0.9861 -4.6013 10 6 1.5097 1.0721 -6.0662 11 7 0.9011 0.1264 -6.8090 12 8 2.0834 1.9972 -6.6101 13 6 2.0545 1.8725 -3.7432 14 6 2.3096 2.0551 1.2678 15 6 1.6401 3.4282 1.4190 16 7 2.8849 3.9093 2.0368 17 6 3.2268 4.8835 2.9364 18 1 2.4776 5.5734 3.2960 19 6 4.5361 4.9842 3.3863 20 7 4.8512 5.8784 4.2992 21 14 5.8506 3.8508 2.6960 22 1 7.1771 4.2458 3.2341 23 1 5.5536 2.4502 3.0903 24 1 5.8663 3.9553 1.2147 25 6 3.6018 2.8882 1.2582 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 0.6837 -0.3758 -1.7741 32 1 0.4441 -0.6112 -6.3754 33 1 0.9207 0.1831 -7.7771 34 1 2.6095 2.7602 -4.0083 35 1 2.1988 1.4059 2.1362 36 1 0.7902 3.4239 2.1014 37 1 1.4143 3.9082 0.4667 38 1 4.1573 6.4171 4.7104 39 1 3.8932 3.2259 0.2637 40 1 4.4233 2.4239 1.8039 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950975275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:53:51 Heat of formation + Delta-G solvation = 15.642677 kcal Electronic energy + Delta-G solvation = -25564.192615 eV Core-core repulsion = 21769.492436 eV Total energy + Delta-G solvation = -3794.700179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.03272 -41.70644 -40.36124 -38.99577 -37.18872 -35.02975 -34.66421 -34.06349 -32.10731 -30.85164 -29.55688 -27.06734 -25.92420 -24.84379 -24.42997 -23.40561 -21.98157 -21.81525 -20.39776 -19.64613 -19.04773 -18.17656 -18.14975 -17.63934 -17.48685 -17.34763 -16.58259 -16.35239 -15.65260 -15.65087 -15.45039 -15.16712 -15.07474 -14.54811 -14.44594 -14.30190 -13.89645 -13.54229 -13.23320 -13.18091 -13.09001 -12.61958 -12.54799 -12.25972 -12.02341 -11.74729 -11.44872 -11.26262 -11.14578 -11.06017 -10.90034 -10.77578 -9.87907 -9.64487 -9.16452 -8.68370 -5.50828 -0.18976 0.39162 1.31079 1.39275 1.46165 1.65248 1.75185 1.88673 2.18578 2.46438 2.48830 3.03373 3.19384 3.29106 3.50961 3.54285 3.71310 3.94543 4.10490 4.22677 4.25848 4.28029 4.41526 4.51157 4.57904 4.63330 4.69296 4.78084 4.86255 4.89970 4.94498 5.09727 5.15218 5.41390 5.45208 5.70265 5.72550 5.90480 6.25072 6.36338 6.66479 7.07915 7.11830 7.27966 8.23970 8.86535 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.003627 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.828119 B = 7718.923362 C = 8413.275419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.070 3.930 3 N -0.590 5.590 4 C 0.574 3.426 5 O -0.568 6.568 6 C -0.260 4.260 7 C 0.064 3.936 8 O -0.133 6.133 9 C -0.089 4.089 10 C 0.610 3.390 11 N -0.814 5.814 12 O -0.568 6.568 13 C -0.088 4.088 14 C 0.140 3.860 15 C 0.114 3.886 16 N -0.652 5.652 17 C -0.288 4.288 18 H 0.051 0.949 19 C -0.082 4.082 20 N -0.969 5.969 21 Si 1.114 2.886 22 H -0.300 1.300 23 H -0.255 1.255 24 H -0.289 1.289 25 C 0.063 3.937 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.288 0.712 32 H 0.423 0.577 33 H 0.421 0.579 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.247 0.753 39 H 0.063 0.937 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.641 -27.144 -18.853 36.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.050 4.050 3 N -0.322 5.322 4 C 0.364 3.636 5 O -0.449 6.449 6 C -0.265 4.265 7 C -0.008 4.008 8 O -0.026 6.026 9 C -0.140 4.140 10 C 0.394 3.606 11 N -0.379 5.379 12 O -0.448 6.448 13 C -0.110 4.110 14 C 0.036 3.964 15 C -0.013 4.013 16 N -0.380 5.380 17 C -0.416 4.416 18 H 0.068 0.932 19 C -0.273 4.273 20 N -0.615 5.615 21 Si 0.942 3.058 22 H -0.228 1.228 23 H -0.181 1.181 24 H -0.216 1.216 25 C -0.062 4.062 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.303 0.697 32 H 0.255 0.745 33 H 0.254 0.746 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.510 -26.359 -19.006 34.822 hybrid contribution -1.545 1.745 0.155 2.336 sum -14.055 -24.615 -18.851 34.041 Atomic orbital electron populations 1.22610 0.93993 1.05477 1.03412 1.22582 0.95878 0.80014 1.06549 1.47834 1.64902 1.15464 1.03959 1.17778 0.77808 0.84496 0.83475 1.90812 1.44557 1.22402 1.87091 1.20552 1.11294 1.01269 0.93357 1.27608 0.94128 0.95438 0.83655 1.83987 1.58387 1.42484 1.17749 1.21610 1.06838 0.93078 0.92489 1.16522 0.78451 0.82409 0.83188 1.43446 1.55811 1.27085 1.11511 1.90951 1.46531 1.35666 1.71672 1.21869 0.98409 0.99592 0.91102 1.23112 0.94533 0.92263 0.86532 1.22770 0.90379 0.92565 0.95567 1.45927 1.06074 1.39467 1.46559 1.20038 0.96664 1.08515 1.16390 0.93156 1.26970 0.99571 1.02129 0.98679 1.71010 1.34848 1.25720 1.29908 0.83169 0.73171 0.74689 0.74814 1.22829 1.18104 1.21591 1.23681 0.96636 0.89743 0.96139 0.91685 0.91827 0.86319 0.87348 0.86595 0.69743 0.74486 0.74553 0.83823 0.82915 0.92547 0.95023 0.94374 0.91980 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 8.72 71.98 0.63 -0.52 16 2 C 0.07 0.70 5.62 86.38 0.49 1.19 16 3 N -0.59 -14.48 2.76 -800.42 -2.21 -16.69 16 4 C 0.57 17.86 7.11 86.68 0.62 18.48 16 5 O -0.57 -24.83 12.52 -4.03 -0.05 -24.88 16 6 C -0.26 -6.01 5.96 -20.08 -0.12 -6.13 16 7 C 0.06 0.74 8.64 67.72 0.59 1.33 16 8 O -0.13 -1.59 10.33 -0.70 -0.01 -1.60 16 9 C -0.09 -1.71 7.09 24.00 0.17 -1.54 16 10 C 0.61 11.70 8.06 86.48 0.70 12.40 16 11 N -0.81 -6.49 8.87 -176.32 -1.56 -8.06 16 12 O -0.57 -16.39 17.68 -4.31 -0.08 -16.47 16 13 C -0.09 -2.30 10.42 22.63 0.24 -2.06 16 14 C 0.14 4.60 4.80 45.55 0.22 4.82 16 15 C 0.11 4.81 8.10 83.18 0.67 5.48 16 16 N -0.65 -34.77 3.69 -738.08 -2.72 -37.49 16 17 C -0.29 -18.13 11.09 84.03 0.93 -17.20 16 18 H 0.05 3.38 8.05 -2.91 -0.02 3.35 16 19 C -0.08 -5.22 5.50 84.86 0.47 -4.76 16 20 N -0.97 -65.72 13.70 21.65 0.30 -65.43 16 21 Si 1.11 58.41 25.08 68.60 1.72 60.13 16 22 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16 23 H -0.25 -11.64 6.39 99.48 0.64 -11.00 16 24 H -0.29 -15.07 6.65 99.48 0.66 -14.41 16 25 C 0.06 2.89 5.30 83.26 0.44 3.33 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.44 5.96 -2.38 -0.01 0.43 16 28 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.11 0.58 5.08 -2.39 -0.01 0.57 16 30 H 0.12 0.76 7.95 -2.38 -0.02 0.74 16 31 H 0.29 0.80 3.06 -2.91 -0.01 0.79 16 32 H 0.42 0.75 8.57 -92.71 -0.79 -0.04 16 33 H 0.42 2.05 8.93 -92.71 -0.83 1.22 16 34 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.15 4.00 7.97 -2.39 -0.02 3.98 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.03 1.47 6.43 -2.38 -0.02 1.46 16 38 H 0.25 16.73 8.73 -92.71 -0.81 15.92 16 39 H 0.06 3.19 5.20 -2.39 -0.01 3.17 16 40 H 0.05 2.07 3.99 -2.38 -0.01 2.06 16 Total: -1.00 -96.28 323.59 0.77 -95.51 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -0.64 Total: 0.16 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.03 Total: 14.81 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -6.20 Total: -127.67 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.13 Total: -42.94 kcal Atomic # 14 Polarization: 58.41 SS G_CDS: 1.72 Total: 60.13 kcal Total: -96.28 0.77 -95.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950975275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.150 kcal (2) G-P(sol) polarization free energy of solvation -96.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds