Wall clock time and date at job start Fri Apr 10 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 C 1.81395 * 103.00006 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47084 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99933 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99982 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47354 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47222 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47403 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99251 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00405 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99620 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46921 * 60.00207 * 19 17 15 21 21 H 1.48494 * 109.47308 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47241 * 300.00249 * 19 17 15 23 23 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 24 24 C 1.38234 * 120.00033 * 0.49775 * 23 5 4 25 25 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 26 26 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 27 27 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 28 28 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 31 31 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 32 32 H 1.09000 * 109.47424 * 299.99435 * 8 7 6 33 33 H 1.09004 * 109.47564 * 60.00160 * 8 7 6 34 34 H 0.96991 * 120.00217 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.46873 * 300.00047 * 12 11 9 36 36 H 1.08996 * 109.47090 * 59.99489 * 12 11 9 37 37 H 1.08998 * 109.46848 * 300.00073 * 13 12 11 38 38 H 1.08998 * 109.46897 * 59.99821 * 13 12 11 39 39 H 1.08998 * 109.47172 * 299.99756 * 14 13 12 40 40 H 1.09003 * 109.47835 * 59.99819 * 14 13 12 41 41 H 0.97005 * 119.99643 * 180.02562 * 18 17 15 42 42 H 1.07999 * 119.99934 * 180.25938 * 23 5 4 43 43 H 1.08001 * 120.00294 * 179.76453 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 6 8.1915 -0.0021 1.4865 9 6 8.8559 -0.0052 2.8391 10 8 8.1805 -0.0075 3.8465 11 7 10.2007 -0.0045 2.9294 12 6 10.8466 -0.0069 4.2443 13 6 12.3661 -0.0061 4.0662 14 6 13.0406 -0.0093 5.4394 15 6 14.5374 -0.0078 5.2639 16 1 14.9647 -0.0053 4.2720 17 6 15.3612 -0.0097 6.3695 18 7 14.8408 -0.0123 7.5772 19 14 17.2165 -0.0086 6.1519 20 1 17.6261 1.2056 5.4014 21 1 17.8712 -0.0104 7.4847 22 1 17.6270 -1.2194 5.3967 23 6 3.5805 -1.1972 0.0010 24 6 2.1982 -1.1972 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1324 -0.0004 29 1 4.1205 2.1325 0.0001 30 1 6.1400 -0.8891 -0.5270 31 1 6.1401 0.8909 -0.5236 32 1 8.4929 -0.8909 0.9321 33 1 8.4922 0.8891 0.9356 34 1 10.7408 -0.0023 2.1238 35 1 10.5449 0.8817 4.7989 36 1 10.5462 -0.8983 4.7950 37 1 12.6674 -0.8949 3.5117 38 1 12.6668 0.8851 3.5153 39 1 12.7394 0.8792 5.9942 40 1 12.7399 -0.9007 5.9899 41 1 15.4203 -0.0132 8.3551 42 1 4.1205 -2.1325 0.0013 43 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349300060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:57 Heat of formation + Delta-G solvation = -39.728850 kcal Electronic energy + Delta-G solvation = -20577.924516 eV Core-core repulsion = 17327.116462 eV Total energy + Delta-G solvation = -3250.808054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.74874 -39.45048 -35.46793 -34.25534 -33.36543 -31.57658 -31.26451 -30.06207 -29.57149 -26.49771 -25.33608 -23.08850 -23.06914 -21.24510 -20.81430 -20.08414 -17.29288 -16.69636 -16.44358 -16.04984 -16.02516 -15.70158 -15.45960 -15.26738 -14.49240 -14.45344 -14.24987 -13.83521 -13.78229 -13.60460 -13.46426 -12.97872 -12.77854 -12.41597 -12.30064 -12.08650 -11.84063 -11.69011 -11.47956 -11.30516 -10.90014 -10.76495 -10.64343 -10.22950 -10.00865 -9.89503 -9.42621 -9.24902 -9.15260 -8.86532 -8.78798 -8.38463 -7.81837 -6.03024 -4.06504 0.63358 1.08914 1.54194 2.32479 2.64851 3.30961 3.31623 3.36042 3.38174 3.48805 4.26865 4.37305 4.42911 4.57269 4.67381 4.68301 4.71325 4.78337 4.99328 5.05867 5.07373 5.16230 5.20288 5.32633 5.37815 5.42526 5.67045 5.73172 5.73915 5.74083 6.05707 6.12306 6.22827 6.25552 6.40859 6.55986 6.65523 6.77609 6.96621 7.58238 7.61327 7.73803 7.95161 8.26743 8.36393 8.99802 9.57721 11.08157 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.058686 B = 0.001623 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.002536 B =17245.748594 C =17391.758195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.096 4.096 5 C -0.076 4.076 6 C -0.069 4.069 7 S -0.167 6.167 8 C -0.134 4.134 9 C 0.523 3.477 10 O -0.523 6.523 11 N -0.722 5.722 12 C 0.117 3.883 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.096 4.096 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.125 0.875 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.547 0.035 -21.064 33.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.078 4.078 6 C -0.216 4.216 7 S 0.061 5.939 8 C -0.285 4.285 9 C 0.307 3.693 10 O -0.399 6.399 11 N -0.373 5.373 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.116 4.116 24 C -0.139 4.139 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.233 0.767 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.491 0.031 -19.155 32.691 hybrid contribution 2.229 0.004 -1.609 2.749 sum -24.262 0.035 -20.764 31.934 Atomic orbital electron populations 1.20810 0.91157 1.02947 1.02313 1.19983 0.96172 0.93255 0.99020 1.21019 0.94000 0.97666 1.01261 1.21042 0.94236 0.97510 0.98826 1.19142 0.92725 0.93879 1.02035 1.22435 0.95334 1.05663 0.98219 1.87902 1.00353 1.97992 1.07625 1.23571 0.97547 1.06976 1.00398 1.19608 0.82842 0.77246 0.89621 1.90760 1.63283 1.48661 1.37167 1.46116 1.05654 1.74798 1.10772 1.21693 0.94055 1.02198 0.82608 1.21891 0.90698 1.00894 1.02371 1.19029 0.94820 0.97718 0.89837 1.21160 0.91378 1.51239 0.92512 0.92705 1.25026 0.98866 0.95224 0.95286 1.69955 1.35280 1.50333 0.97610 0.86635 0.85422 0.78570 0.77222 1.20254 1.21241 1.20250 1.21043 0.94235 0.97513 0.98820 1.21021 0.94000 0.97666 1.01259 0.91146 0.91450 0.91450 0.85889 0.85727 0.89212 0.89212 0.87314 0.87305 0.76726 0.91594 0.91600 0.92692 0.92688 0.96231 0.96231 0.92845 0.85724 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.08 -0.63 5.88 -104.62 -0.62 -1.25 16 3 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 4 C -0.10 -0.81 9.70 -39.58 -0.38 -1.20 16 5 C -0.08 -0.67 5.14 -104.63 -0.54 -1.21 16 6 C -0.07 -0.55 6.07 36.00 0.22 -0.33 16 7 S -0.17 -1.98 20.86 -107.50 -2.24 -4.23 16 8 C -0.13 -1.35 6.42 36.01 0.23 -1.12 16 9 C 0.52 7.65 7.85 -10.98 -0.09 7.56 16 10 O -0.52 -10.07 15.87 5.56 0.09 -9.98 16 11 N -0.72 -9.97 5.56 -60.29 -0.33 -10.31 16 12 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 13 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.10 -0.81 9.70 -39.58 -0.38 -1.20 16 24 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.09 0.59 8.09 -51.92 -0.42 0.17 16 31 H 0.09 0.59 8.09 -51.92 -0.42 0.17 16 32 H 0.11 0.84 8.14 -51.92 -0.42 0.41 16 33 H 0.11 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -33.86 379.46 -10.80 -44.66 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.06 Total: -1.23 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.68 Total: -14.99 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.40 Total: -36.32 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.24 Total: -4.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.86 -10.80 -44.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349300060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.926 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds