Wall clock time and date at job start Fri Apr 10 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 C 1.81395 * 103.00006 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47084 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99933 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99982 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47354 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47222 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47403 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99251 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00405 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99620 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46921 * 60.00207 * 19 17 15 21 21 H 1.48494 * 109.47308 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47241 * 300.00249 * 19 17 15 23 23 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 24 24 C 1.38234 * 120.00033 * 0.49775 * 23 5 4 25 25 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 26 26 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 27 27 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 28 28 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 31 31 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 32 32 H 1.09000 * 109.47424 * 299.99435 * 8 7 6 33 33 H 1.09004 * 109.47564 * 60.00160 * 8 7 6 34 34 H 0.96991 * 120.00217 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.46873 * 300.00047 * 12 11 9 36 36 H 1.08996 * 109.47090 * 59.99489 * 12 11 9 37 37 H 1.08998 * 109.46848 * 300.00073 * 13 12 11 38 38 H 1.08998 * 109.46897 * 59.99821 * 13 12 11 39 39 H 1.08998 * 109.47172 * 299.99756 * 14 13 12 40 40 H 1.09003 * 109.47835 * 59.99819 * 14 13 12 41 41 H 0.97005 * 119.99643 * 180.02562 * 18 17 15 42 42 H 1.07999 * 119.99934 * 180.25938 * 23 5 4 43 43 H 1.08001 * 120.00294 * 179.76453 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 6 8.1915 -0.0021 1.4865 9 6 8.8559 -0.0052 2.8391 10 8 8.1805 -0.0075 3.8465 11 7 10.2007 -0.0045 2.9294 12 6 10.8466 -0.0069 4.2443 13 6 12.3661 -0.0061 4.0662 14 6 13.0406 -0.0093 5.4394 15 6 14.5374 -0.0078 5.2639 16 1 14.9647 -0.0053 4.2720 17 6 15.3612 -0.0097 6.3695 18 7 14.8408 -0.0123 7.5772 19 14 17.2165 -0.0086 6.1519 20 1 17.6261 1.2056 5.4014 21 1 17.8712 -0.0104 7.4847 22 1 17.6270 -1.2194 5.3967 23 6 3.5805 -1.1972 0.0010 24 6 2.1982 -1.1972 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1324 -0.0004 29 1 4.1205 2.1325 0.0001 30 1 6.1400 -0.8891 -0.5270 31 1 6.1401 0.8909 -0.5236 32 1 8.4929 -0.8909 0.9321 33 1 8.4922 0.8891 0.9356 34 1 10.7408 -0.0023 2.1238 35 1 10.5449 0.8817 4.7989 36 1 10.5462 -0.8983 4.7950 37 1 12.6674 -0.8949 3.5117 38 1 12.6668 0.8851 3.5153 39 1 12.7394 0.8792 5.9942 40 1 12.7399 -0.9007 5.9899 41 1 15.4203 -0.0132 8.3551 42 1 4.1205 -2.1325 0.0013 43 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349300060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:57 Heat of formation + Delta-G solvation = -59.205090 kcal Electronic energy + Delta-G solvation = -20578.769069 eV Core-core repulsion = 17327.116462 eV Total energy + Delta-G solvation = -3251.652607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70288 -40.28536 -37.00322 -35.22048 -34.79368 -33.24385 -31.83171 -31.15240 -30.19330 -28.25388 -25.90457 -24.88957 -23.64103 -22.34349 -21.90060 -21.41486 -18.61977 -18.19733 -17.66460 -17.00221 -16.82103 -16.56497 -16.48676 -16.33194 -15.98597 -15.80413 -14.96856 -14.79486 -14.39096 -14.37452 -14.22697 -14.22231 -13.78732 -13.71201 -13.57808 -13.28452 -12.87408 -12.71031 -12.64131 -12.55697 -12.41166 -12.04161 -11.84351 -11.67976 -11.61994 -11.27652 -10.98939 -10.97280 -10.54984 -10.16795 -9.83692 -9.37551 -8.68601 -8.19402 -6.31321 -0.04088 0.50202 0.83212 1.41968 1.44987 1.52256 1.52907 1.61944 2.19309 2.42851 2.89985 3.14364 3.64984 3.75905 3.83953 4.07784 4.08536 4.14295 4.15961 4.17604 4.20964 4.27687 4.52404 4.53487 4.59371 4.61039 4.84132 4.86089 4.92795 4.96294 4.96994 5.16165 5.18292 5.28120 5.38760 5.48431 5.51498 5.63279 5.69770 5.70284 5.83640 6.10241 6.21376 6.48482 6.86099 7.17695 7.38478 8.92435 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.058686 B = 0.001623 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.002536 B =17245.748594 C =17391.758195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.108 4.108 5 C -0.094 4.094 6 C -0.045 4.045 7 S -0.247 6.247 8 C -0.112 4.112 9 C 0.519 3.481 10 O -0.576 6.576 11 N -0.708 5.708 12 C 0.130 3.870 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.543 4.543 16 H 0.068 0.932 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.108 4.108 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.419 0.581 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.070 0.930 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.132 0.868 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.087 0.044 -24.046 34.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.128 4.128 5 C -0.095 4.095 6 C -0.192 4.192 7 S -0.019 6.019 8 C -0.262 4.262 9 C 0.305 3.695 10 O -0.455 6.455 11 N -0.361 5.361 12 C 0.006 3.994 13 C -0.139 4.139 14 C -0.016 4.016 15 C -0.581 4.581 16 H 0.086 0.914 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.128 4.128 24 C -0.151 4.151 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.257 0.743 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.016 0.040 -22.195 34.197 hybrid contribution 1.983 0.001 -0.684 2.098 sum -24.032 0.041 -22.879 33.182 Atomic orbital electron populations 1.20850 0.89558 1.03536 1.03159 1.20328 0.97523 0.93142 0.98238 1.21301 0.94095 0.98559 1.01181 1.21267 0.94762 0.97883 0.98861 1.19329 0.93320 0.94139 1.02717 1.22403 0.94602 1.07312 0.94908 1.88231 1.02947 1.98278 1.12424 1.23464 0.95200 1.10040 0.97515 1.20382 0.82529 0.75663 0.90929 1.90747 1.64395 1.50868 1.39504 1.45842 1.05862 1.74355 1.10035 1.21241 0.93188 1.00630 0.84332 1.21590 0.91126 1.02311 0.98829 1.18955 0.94827 0.95026 0.92774 1.21662 0.92611 1.50660 0.93160 0.91398 1.26033 1.04430 0.94730 0.94897 1.70111 1.37245 1.51563 0.98593 0.85458 0.78764 0.79283 0.77276 1.18991 1.21237 1.18980 1.21267 0.94762 0.97885 0.98863 1.21302 0.94094 0.98559 1.01182 0.90077 0.90877 0.90876 0.84415 0.84959 0.87497 0.87495 0.84088 0.84077 0.74342 0.93339 0.93346 0.91144 0.91139 0.99048 0.99044 0.92843 0.84969 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.31 16 2 C -0.09 -1.30 5.88 -19.86 -0.12 -1.41 16 3 C -0.13 -1.97 9.70 22.27 0.22 -1.75 16 4 C -0.11 -1.73 9.70 22.27 0.22 -1.52 16 5 C -0.09 -1.55 5.14 -19.87 -0.10 -1.65 16 6 C -0.05 -0.63 6.07 71.23 0.43 -0.20 16 7 S -0.25 -5.64 20.86 -56.49 -1.18 -6.82 16 8 C -0.11 -1.96 6.42 71.24 0.46 -1.50 16 9 C 0.52 14.59 7.85 87.66 0.69 15.28 16 10 O -0.58 -22.59 15.87 -3.04 -0.05 -22.64 16 11 N -0.71 -18.38 5.56 -463.05 -2.57 -20.95 16 12 C 0.13 4.56 5.67 86.38 0.49 5.05 16 13 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 14 C 0.02 1.14 4.97 29.85 0.15 1.29 16 15 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 17 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 18 N -0.94 -57.22 13.29 21.45 0.28 -56.93 16 19 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 C -0.11 -1.73 9.70 22.27 0.22 -1.52 16 24 C -0.13 -1.97 9.70 22.27 0.22 -1.75 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 27 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 28 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 29 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.11 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.11 1.12 8.09 -2.39 -0.02 1.10 16 32 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.42 7.50 8.47 -92.72 -0.79 6.71 16 35 H 0.05 1.86 8.14 -2.38 -0.02 1.85 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 42 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -75.99 379.46 3.14 -72.85 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.20 Total: 12.19 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.43 Total: -23.27 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.29 Total: -77.89 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.18 Total: -6.82 kcal Total: -75.99 3.14 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349300060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.650 kcal (2) G-P(sol) polarization free energy of solvation -75.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds