Wall clock time and date at job start Fri Apr 10 2020 21:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00567 * 3 2 1 5 5 H 1.48505 * 109.47421 * 30.00435 * 3 2 1 6 6 H 1.48494 * 109.47411 * 150.00643 * 3 2 1 7 7 C 1.37880 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50007 * 59.99960 * 9 7 2 11 11 C 1.53039 * 109.49530 * 299.93494 * 9 7 2 12 12 C 1.53049 * 109.53353 * 178.65349 * 11 9 7 13 13 C 1.53187 * 109.31497 * 61.36666 * 12 11 9 14 14 N 1.46931 * 108.77274 * 305.36469 * 13 12 11 15 15 C 1.34780 * 120.62702 * 233.58083 * 14 13 12 16 16 O 1.21281 * 119.99932 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99912 * 0.02562 * 15 14 13 18 18 C 1.53001 * 109.46939 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47205 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.47330 * 179.97438 * 19 18 17 21 21 C 1.38424 * 122.53998 * 269.73807 * 20 19 18 22 22 C 1.33385 * 114.92140 * 179.75843 * 21 20 19 23 23 S 1.75880 * 109.59520 * 0.47712 * 22 21 20 24 24 C 1.33388 * 122.54254 * 90.02063 * 20 19 18 25 25 C 1.46925 * 118.74018 * 53.60848 * 14 13 12 26 26 H 0.96999 * 119.99883 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46238 * 298.67203 * 11 9 7 28 28 H 1.08995 * 109.46216 * 58.65053 * 11 9 7 29 29 H 1.09006 * 109.49335 * 181.31393 * 12 11 9 30 30 H 1.08993 * 109.49810 * 301.41219 * 12 11 9 31 31 H 1.09002 * 109.58909 * 65.14881 * 13 12 11 32 32 H 1.08993 * 109.58933 * 185.43112 * 13 12 11 33 33 H 1.08997 * 109.46970 * 299.98784 * 17 15 14 34 34 H 1.08998 * 109.47438 * 59.99401 * 17 15 14 35 35 H 1.09001 * 109.46981 * 299.99901 * 18 17 15 36 36 H 1.09005 * 109.47301 * 59.99425 * 18 17 15 37 37 H 1.09001 * 109.47222 * 299.99939 * 19 18 17 38 38 H 1.08998 * 109.47153 * 59.99934 * 19 18 17 39 39 H 1.08004 * 122.53827 * 359.97438 * 21 20 19 40 40 H 1.08001 * 125.20467 * 180.20969 * 22 21 20 41 41 H 1.08007 * 125.19666 * 0.02562 * 24 20 19 42 42 H 1.09005 * 109.58300 * 186.60199 * 25 14 13 43 43 H 1.08998 * 109.58651 * 66.18140 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6238 -2.5572 -0.8901 11 6 0.3727 -2.5818 1.2500 12 6 -0.4183 -3.8919 1.2341 13 6 0.5571 -5.0730 1.2495 14 7 1.4989 -4.9231 0.1317 15 6 1.6749 -5.9215 -0.7564 16 8 2.4549 -5.7853 -1.6751 17 6 0.9017 -7.2065 -0.6086 18 6 1.2844 -8.1648 -1.7382 19 6 0.4999 -9.4697 -1.5878 20 6 0.8764 -10.4134 -2.7008 21 6 0.2032 -10.4450 -3.9099 22 6 0.6669 -11.3352 -4.7883 23 16 2.0194 -12.2106 -4.0828 24 6 1.8801 -11.2854 -2.5935 25 6 2.2455 -3.6644 0.0009 26 1 -0.4850 0.8400 0.0004 27 1 1.0025 -2.5487 2.1390 28 1 -0.3196 -1.7401 1.2638 29 1 -1.0611 -3.9395 2.1132 30 1 -1.0297 -3.9368 0.3329 31 1 1.1061 -5.0813 2.1912 32 1 0.0035 -6.0056 1.1412 33 1 1.1379 -7.6641 0.3521 34 1 -0.1666 -6.9955 -0.6578 35 1 1.0480 -7.7070 -2.6988 36 1 2.3527 -8.3758 -1.6894 37 1 0.7367 -9.9273 -0.6273 38 1 -0.5684 -9.2590 -1.6364 39 1 -0.6320 -9.7954 -4.1269 40 1 0.2695 -11.4971 -5.7794 41 1 2.5105 -11.4051 -1.7247 42 1 2.8061 -3.6676 -0.9340 43 1 2.9321 -3.5579 0.8407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855257226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:43 Heat of formation + Delta-G solvation = -26.711506 kcal Electronic energy + Delta-G solvation = -22450.412347 eV Core-core repulsion = 19200.168767 eV Total energy + Delta-G solvation = -3250.243579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68298 -38.59028 -36.81699 -34.16676 -33.45174 -31.34704 -30.58860 -29.83264 -27.60074 -25.11271 -24.67435 -23.34290 -21.84204 -21.54793 -19.69762 -18.92253 -18.22702 -17.74239 -16.78013 -16.13012 -15.80794 -15.38858 -15.04173 -14.56973 -14.05242 -13.69661 -13.52525 -13.37140 -13.18609 -12.93848 -12.78009 -12.69537 -12.41012 -12.14029 -12.02325 -11.74891 -11.63834 -11.42065 -10.99071 -10.90183 -10.82064 -10.71269 -10.68265 -10.30124 -9.96055 -9.79969 -9.47024 -9.24250 -8.98593 -8.82267 -8.54432 -8.39084 -7.87622 -6.02552 -4.09494 0.82444 1.48138 1.79921 2.51976 3.09766 3.29663 3.36198 3.39255 3.58834 4.42167 4.64458 4.75741 4.81351 4.97571 5.09376 5.25594 5.30129 5.31918 5.34082 5.44192 5.55340 5.63581 5.64283 5.67432 5.79472 5.84445 6.05035 6.12433 6.23762 6.32933 6.35528 6.37000 6.41099 6.48545 6.66746 6.81464 6.98809 7.16924 7.33309 7.68618 7.91903 8.04376 8.07324 8.37432 8.69264 8.94345 9.55374 11.03020 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.002354 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.255799 B =11891.694901 C =12255.540817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.506 3.494 16 O -0.553 6.553 17 C -0.139 4.139 18 C -0.096 4.096 19 C -0.062 4.062 20 C -0.095 4.095 21 C -0.128 4.128 22 C -0.212 4.212 23 S 0.080 5.920 24 C -0.211 4.211 25 C 0.117 3.883 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.078 0.922 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -22.498 -1.437 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.337 5.337 15 C 0.294 3.706 16 O -0.431 6.431 17 C -0.179 4.179 18 C -0.135 4.135 19 C -0.102 4.102 20 C -0.107 4.107 21 C -0.159 4.159 22 C -0.347 4.347 23 S 0.343 5.657 24 C -0.347 4.347 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.159 0.841 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.096 0.904 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.886 -23.470 -2.437 23.613 hybrid contribution -0.584 2.107 0.562 2.258 sum -1.471 -21.363 -1.875 21.495 Atomic orbital electron populations 1.69872 1.05897 1.26466 1.50594 1.24940 0.94864 0.99093 0.94959 0.86577 0.79845 0.83320 0.78164 1.20659 1.21251 1.19886 1.21085 0.92995 0.90308 1.50826 0.92499 1.18969 0.92978 0.91209 0.94769 0.95317 1.21631 0.99454 0.95409 0.98577 1.22005 0.97665 0.96739 1.00933 1.21730 0.91388 0.99033 0.89233 1.48333 1.42136 1.16143 1.27117 1.20571 0.82993 0.85149 0.81870 1.90661 1.38091 1.81764 1.32626 1.21696 1.01218 0.94162 1.00842 1.21299 1.00563 0.92960 0.98638 1.20390 1.00576 0.93716 0.95480 1.18978 0.96553 0.98427 0.96754 1.20163 1.02202 1.00336 0.93171 1.25583 1.01931 1.02994 1.04236 1.84237 1.32856 1.39882 1.08710 1.25464 1.04372 1.02734 1.02084 1.21974 0.95064 0.82024 1.01377 0.92984 0.94603 0.88656 0.92493 0.92393 0.92039 0.91060 0.89349 0.89103 0.90988 0.91180 0.90944 0.90731 0.84126 0.81961 0.81940 0.90374 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.95 8.56 -34.44 -0.29 -14.25 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C -0.14 -2.35 6.08 -26.61 -0.16 -2.51 16 13 C 0.11 1.64 6.34 -3.71 -0.02 1.61 16 14 N -0.61 -11.08 2.97 -172.77 -0.51 -11.59 16 15 C 0.51 8.95 7.70 -10.98 -0.08 8.87 16 16 O -0.55 -11.92 15.39 5.56 0.09 -11.83 16 17 C -0.14 -1.68 4.05 -27.88 -0.11 -1.79 16 18 C -0.10 -1.13 4.49 -26.73 -0.12 -1.25 16 19 C -0.06 -0.55 5.47 -27.88 -0.15 -0.71 16 20 C -0.09 -0.94 5.06 -106.25 -0.54 -1.47 16 21 C -0.13 -1.22 9.98 -41.21 -0.41 -1.63 16 22 C -0.21 -1.87 11.23 29.04 0.33 -1.55 16 23 S 0.08 0.70 23.34 -107.50 -2.51 -1.81 16 24 C -0.21 -1.99 10.98 29.04 0.32 -1.67 16 25 C 0.12 2.54 5.66 -3.71 -0.02 2.52 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.82 5.95 -51.93 -0.31 0.51 16 33 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 34 H 0.09 0.97 7.70 -51.93 -0.40 0.57 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 38 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 39 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -30.80 358.13 -10.47 -41.27 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.83 Total: 0.86 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.71 Total: -14.08 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.11 Total: -35.93 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.80 -10.47 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.558 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds