Wall clock time and date at job start Fri Apr 10 2020 21:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00567 * 3 2 1 5 5 H 1.48505 * 109.47421 * 30.00435 * 3 2 1 6 6 H 1.48494 * 109.47411 * 150.00643 * 3 2 1 7 7 C 1.37880 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50007 * 59.99960 * 9 7 2 11 11 C 1.53039 * 109.49530 * 299.93494 * 9 7 2 12 12 C 1.53049 * 109.53353 * 178.65349 * 11 9 7 13 13 C 1.53187 * 109.31497 * 61.36666 * 12 11 9 14 14 N 1.46931 * 108.77274 * 305.36469 * 13 12 11 15 15 C 1.34780 * 120.62702 * 233.58083 * 14 13 12 16 16 O 1.21281 * 119.99932 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99912 * 0.02562 * 15 14 13 18 18 C 1.53001 * 109.46939 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47205 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.47330 * 179.97438 * 19 18 17 21 21 C 1.38424 * 122.53998 * 269.73807 * 20 19 18 22 22 C 1.33385 * 114.92140 * 179.75843 * 21 20 19 23 23 S 1.75880 * 109.59520 * 0.47712 * 22 21 20 24 24 C 1.33388 * 122.54254 * 90.02063 * 20 19 18 25 25 C 1.46925 * 118.74018 * 53.60848 * 14 13 12 26 26 H 0.96999 * 119.99883 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46238 * 298.67203 * 11 9 7 28 28 H 1.08995 * 109.46216 * 58.65053 * 11 9 7 29 29 H 1.09006 * 109.49335 * 181.31393 * 12 11 9 30 30 H 1.08993 * 109.49810 * 301.41219 * 12 11 9 31 31 H 1.09002 * 109.58909 * 65.14881 * 13 12 11 32 32 H 1.08993 * 109.58933 * 185.43112 * 13 12 11 33 33 H 1.08997 * 109.46970 * 299.98784 * 17 15 14 34 34 H 1.08998 * 109.47438 * 59.99401 * 17 15 14 35 35 H 1.09001 * 109.46981 * 299.99901 * 18 17 15 36 36 H 1.09005 * 109.47301 * 59.99425 * 18 17 15 37 37 H 1.09001 * 109.47222 * 299.99939 * 19 18 17 38 38 H 1.08998 * 109.47153 * 59.99934 * 19 18 17 39 39 H 1.08004 * 122.53827 * 359.97438 * 21 20 19 40 40 H 1.08001 * 125.20467 * 180.20969 * 22 21 20 41 41 H 1.08007 * 125.19666 * 0.02562 * 24 20 19 42 42 H 1.09005 * 109.58300 * 186.60199 * 25 14 13 43 43 H 1.08998 * 109.58651 * 66.18140 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6238 -2.5572 -0.8901 11 6 0.3727 -2.5818 1.2500 12 6 -0.4183 -3.8919 1.2341 13 6 0.5571 -5.0730 1.2495 14 7 1.4989 -4.9231 0.1317 15 6 1.6749 -5.9215 -0.7564 16 8 2.4549 -5.7853 -1.6751 17 6 0.9017 -7.2065 -0.6086 18 6 1.2844 -8.1648 -1.7382 19 6 0.4999 -9.4697 -1.5878 20 6 0.8764 -10.4134 -2.7008 21 6 0.2032 -10.4450 -3.9099 22 6 0.6669 -11.3352 -4.7883 23 16 2.0194 -12.2106 -4.0828 24 6 1.8801 -11.2854 -2.5935 25 6 2.2455 -3.6644 0.0009 26 1 -0.4850 0.8400 0.0004 27 1 1.0025 -2.5487 2.1390 28 1 -0.3196 -1.7401 1.2638 29 1 -1.0611 -3.9395 2.1132 30 1 -1.0297 -3.9368 0.3329 31 1 1.1061 -5.0813 2.1912 32 1 0.0035 -6.0056 1.1412 33 1 1.1379 -7.6641 0.3521 34 1 -0.1666 -6.9955 -0.6578 35 1 1.0480 -7.7070 -2.6988 36 1 2.3527 -8.3758 -1.6894 37 1 0.7367 -9.9273 -0.6273 38 1 -0.5684 -9.2590 -1.6364 39 1 -0.6320 -9.7954 -4.1269 40 1 0.2695 -11.4971 -5.7794 41 1 2.5105 -11.4051 -1.7247 42 1 2.8061 -3.6676 -0.9340 43 1 2.9321 -3.5579 0.8407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:42 Heat of formation + Delta-G solvation = -42.969152 kcal Electronic energy + Delta-G solvation = -22451.117331 eV Core-core repulsion = 19200.168767 eV Total energy + Delta-G solvation = -3250.948564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09261 -39.33144 -38.37875 -35.40394 -35.02084 -33.03125 -32.07587 -30.84362 -28.54864 -26.97604 -26.03013 -24.30729 -23.32113 -22.60305 -21.27501 -19.78355 -19.49372 -18.61426 -18.37483 -17.75837 -16.90112 -16.63621 -16.55881 -15.98906 -15.23868 -15.05923 -14.90244 -14.60688 -14.38541 -14.20289 -13.86930 -13.81069 -13.58069 -13.47001 -13.27843 -12.89970 -12.71554 -12.68607 -12.53722 -12.48182 -12.28444 -11.88379 -11.83609 -11.62320 -11.57077 -11.48442 -11.25217 -10.85575 -10.63142 -10.42829 -9.67066 -9.44650 -9.23987 -8.11764 -6.26915 0.14075 0.81783 1.12391 1.39547 1.40754 1.50713 1.73828 1.80943 2.20662 2.43553 3.14537 3.65744 3.90082 4.03922 4.14933 4.20771 4.29654 4.34360 4.37412 4.53361 4.57510 4.59865 4.62729 4.73742 4.76353 4.79776 4.88770 4.89880 4.97097 5.01866 5.10899 5.14662 5.24328 5.31518 5.42987 5.50068 5.59054 5.60472 5.61850 5.66711 5.93518 6.14308 6.34534 6.64305 6.82845 7.30463 7.41139 8.91838 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.002354 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.255799 B =11891.694901 C =12255.540817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.041 3.959 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.109 3.891 14 N -0.611 5.611 15 C 0.496 3.504 16 O -0.602 6.602 17 C -0.127 4.127 18 C -0.090 4.090 19 C -0.052 4.052 20 C -0.110 4.110 21 C -0.145 4.145 22 C -0.218 4.218 23 S 0.079 5.921 24 C -0.222 4.222 25 C 0.129 3.871 26 H 0.262 0.738 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.181 0.819 41 H 0.176 0.824 42 H 0.048 0.952 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 -24.312 0.203 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.003 0.997 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.012 4.012 14 N -0.342 5.342 15 C 0.287 3.713 16 O -0.484 6.484 17 C -0.166 4.166 18 C -0.128 4.128 19 C -0.091 4.091 20 C -0.122 4.122 21 C -0.175 4.175 22 C -0.353 4.353 23 S 0.342 5.658 24 C -0.357 4.357 25 C 0.006 3.994 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.167 0.833 40 H 0.198 0.802 41 H 0.193 0.807 42 H 0.066 0.934 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.742 -25.306 -0.776 25.378 hybrid contribution -0.305 2.679 -0.017 2.696 sum -2.047 -22.628 -0.793 22.734 Atomic orbital electron populations 1.70006 1.07052 1.27215 1.50924 1.25691 0.95726 1.02265 0.94594 0.85610 0.78873 0.79407 0.78095 1.20611 1.20401 1.19205 1.21455 0.93020 0.92048 1.51208 0.93143 1.18873 0.93176 0.91616 0.94155 0.99720 1.21431 0.98760 0.97354 0.96985 1.21919 0.97875 0.94922 1.01911 1.22009 0.90617 0.99906 0.88682 1.48436 1.42452 1.14850 1.28470 1.21694 0.82549 0.86526 0.80520 1.90640 1.40386 1.82849 1.34567 1.21759 1.01431 0.90738 1.02678 1.21202 0.99987 0.94280 0.97380 1.20336 1.00857 0.91824 0.96133 1.19196 0.96884 0.98874 0.97272 1.20402 1.02833 1.00852 0.93446 1.25892 1.01708 1.02661 1.05019 1.84220 1.32958 1.39858 1.08733 1.25739 1.04497 1.02750 1.02698 1.21492 0.94528 0.83319 1.00016 0.92908 0.94495 0.92050 0.89126 0.93655 0.90141 0.86106 0.85560 0.86550 0.93632 0.93000 0.88863 0.89224 0.83257 0.80213 0.80655 0.93372 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.58 11.32 21.45 0.24 -52.33 16 2 C 0.02 0.91 5.30 84.66 0.45 1.36 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -30.31 8.56 25.60 0.22 -30.09 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.09 2.25 -11.46 -0.03 2.07 16 10 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 11 C -0.11 -4.79 4.96 30.62 0.15 -4.64 16 12 C -0.13 -4.17 6.08 30.67 0.19 -3.98 16 13 C 0.11 2.86 6.34 86.36 0.55 3.40 16 14 N -0.61 -21.63 2.97 -818.91 -2.43 -24.06 16 15 C 0.50 17.03 7.70 87.66 0.67 17.71 16 16 O -0.60 -26.66 15.39 -3.03 -0.05 -26.71 16 17 C -0.13 -2.61 4.05 29.85 0.12 -2.49 16 18 C -0.09 -1.95 4.49 30.59 0.14 -1.82 16 19 C -0.05 -0.77 5.47 29.85 0.16 -0.61 16 20 C -0.11 -1.98 5.06 -20.92 -0.11 -2.09 16 21 C -0.15 -2.58 9.98 21.22 0.21 -2.37 16 22 C -0.22 -3.59 11.23 66.72 0.75 -2.84 16 23 S 0.08 1.31 23.34 -56.49 -1.32 -0.01 16 24 C -0.22 -3.85 10.98 66.72 0.73 -3.12 16 25 C 0.13 5.79 5.66 86.36 0.49 6.27 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 3.17 6.04 -2.39 -0.01 3.15 16 29 H 0.09 2.37 8.14 -2.38 -0.02 2.36 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.12 2.03 5.95 -2.39 -0.01 2.02 16 33 H 0.13 1.74 7.94 -2.39 -0.02 1.73 16 34 H 0.12 1.90 7.70 -2.39 -0.02 1.88 16 35 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.05 1.30 8.10 -2.38 -0.02 1.29 16 37 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.09 1.09 8.13 -2.39 -0.02 1.07 16 39 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.05 2.40 7.01 -2.38 -0.02 2.38 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -71.78 358.13 4.15 -67.63 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.98 Total: 12.65 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 4.70 Total: -23.24 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.19 Total: -76.39 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: -0.01 kcal Total: -71.78 4.15 -67.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.665 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds