Wall clock time and date at job start Fri Apr 10 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86802 * 120.00146 * 2 1 4 4 H 1.48503 * 109.47154 * 270.00349 * 3 2 1 5 5 H 1.48503 * 109.46995 * 29.99751 * 3 2 1 6 6 H 1.48489 * 109.47570 * 150.00455 * 3 2 1 7 7 C 1.38652 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99615 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00484 * 179.97438 * 7 2 1 10 10 C 1.35756 * 117.00236 * 185.05620 * 9 7 2 11 11 C 1.38897 * 120.06477 * 354.48547 * 10 9 7 12 12 C 1.38079 * 119.92669 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.06878 * 359.74143 * 12 11 10 14 14 C 1.38281 * 120.13651 * 0.51512 * 13 12 11 15 15 C 1.50703 * 119.96392 * 179.76552 * 14 13 12 16 16 C 1.50698 * 109.46978 * 269.72159 * 15 14 13 17 17 O 1.21277 * 120.00289 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99861 * 180.02562 * 16 15 14 19 19 C 1.47026 * 125.64776 * 0.03859 * 18 16 15 20 20 C 1.54328 * 107.26887 * 178.90587 * 19 18 16 21 21 C 1.55150 * 102.94281 * 337.80634 * 20 19 18 22 22 H 1.09001 * 111.01003 * 277.42619 * 21 20 19 23 23 C 1.53002 * 111.00175 * 153.57749 * 21 20 19 24 24 F 1.39899 * 109.47333 * 66.45760 * 23 21 20 25 25 C 1.47418 * 125.64948 * 179.97438 * 18 16 15 26 26 C 1.38115 * 120.06906 * 359.48463 * 14 13 12 27 27 H 0.97006 * 120.00393 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.03863 * 359.95194 * 11 10 9 29 29 H 1.07999 * 119.96421 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.93315 * 180.27479 * 13 12 11 31 31 H 1.08994 * 109.47028 * 149.72117 * 15 14 13 32 32 H 1.09009 * 109.47007 * 29.72030 * 15 14 13 33 33 H 1.09001 * 109.88302 * 59.49218 * 19 18 16 34 34 H 1.08992 * 109.88274 * 298.32475 * 19 18 16 35 35 H 1.09004 * 110.71342 * 219.44521 * 20 19 18 36 36 H 1.08994 * 110.72092 * 96.17645 * 20 19 18 37 37 H 1.09009 * 109.46983 * 186.45588 * 23 21 20 38 38 H 1.09006 * 109.46995 * 306.44994 * 23 21 20 39 39 H 1.09001 * 110.37011 * 85.32345 * 25 18 16 40 40 H 1.09002 * 110.46039 * 323.05243 * 25 18 16 41 41 H 1.07998 * 120.03166 * 180.23454 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2232 -3.5745 -0.0956 12 6 3.8529 -4.7984 -0.2053 13 6 5.2289 -4.8609 -0.3329 14 6 5.9789 -3.6992 -0.3404 15 6 7.4782 -3.7721 -0.4744 16 6 8.1012 -3.8598 0.8950 17 8 7.3971 -3.8632 1.8824 18 7 9.4408 -3.9343 1.0223 19 6 10.4079 -3.9388 -0.0852 20 6 11.8179 -4.0092 0.5382 21 6 11.5900 -3.4698 1.9749 22 1 11.5940 -2.3799 1.9884 23 6 12.6327 -4.0317 2.9434 24 9 13.8968 -3.5356 2.6071 25 6 10.1793 -4.0235 2.2951 26 6 5.3549 -2.4719 -0.2311 27 1 -0.4851 0.8401 0.0004 28 1 2.1486 -3.5262 0.0002 29 1 3.2702 -5.7077 -0.1951 30 1 5.7187 -5.8192 -0.4230 31 1 7.8414 -2.8788 -0.9824 32 1 7.7487 -4.6550 -1.0538 33 1 10.3063 -3.0245 -0.6698 34 1 10.2397 -4.8082 -0.7206 35 1 12.5130 -3.3711 -0.0076 36 1 12.1769 -5.0380 0.5648 37 1 12.3832 -3.7305 3.9609 38 1 12.6402 -5.1198 2.8781 39 1 10.2447 -5.0606 2.6239 40 1 9.6968 -3.4138 3.0590 41 1 5.9409 -1.5648 -0.2409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881671231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:59 Heat of formation + Delta-G solvation = -111.037213 kcal Electronic energy + Delta-G solvation = -24254.367918 eV Core-core repulsion = 20434.254525 eV Total energy + Delta-G solvation = -3820.113393 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.54412 -41.33756 -40.68510 -38.88722 -38.05393 -34.49720 -33.99122 -33.12405 -31.09908 -30.52806 -28.89607 -27.26424 -26.42729 -24.17511 -23.34586 -22.46821 -21.54672 -20.38535 -19.62835 -18.82602 -18.19814 -17.71296 -16.95523 -16.84780 -16.61385 -16.49753 -16.22100 -15.84869 -15.65477 -15.58245 -15.15746 -14.89355 -14.47122 -14.42143 -14.18131 -13.96348 -13.79502 -13.70401 -13.11054 -13.01463 -12.84975 -12.54476 -12.46053 -12.41867 -12.36633 -11.99333 -11.94643 -11.63865 -11.51859 -11.32560 -11.00075 -10.90276 -9.69360 -9.67437 -9.08064 -8.51259 -6.24070 0.46274 0.68535 1.28607 1.33200 1.50010 1.61920 1.96317 2.26858 2.75845 3.03130 3.10714 3.28784 3.49782 3.63503 3.73508 3.96922 4.05391 4.14460 4.17723 4.25129 4.30658 4.35183 4.41313 4.50111 4.53298 4.58715 4.68312 4.72563 4.74615 4.87593 4.94066 4.97485 5.06684 5.22495 5.26955 5.35183 5.38076 5.63339 5.70792 5.75367 5.90203 6.23000 6.46760 6.82998 7.16221 7.57773 8.60581 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.002754 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.407232 B =10162.889429 C =10996.056077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.077 4.077 13 C -0.170 4.170 14 C -0.029 4.029 15 C -0.084 4.084 16 C 0.527 3.473 17 O -0.580 6.580 18 N -0.623 5.623 19 C 0.091 3.909 20 C -0.119 4.119 21 C -0.131 4.131 22 H 0.089 0.911 23 C 0.072 3.928 24 F -0.229 7.229 25 C 0.109 3.891 26 C -0.182 4.182 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.130 -11.175 -0.996 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.098 0.902 9 O -0.155 6.155 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.095 4.095 13 C -0.189 4.189 14 C -0.030 4.030 15 C -0.123 4.123 16 C 0.317 3.683 17 O -0.460 6.460 18 N -0.357 5.357 19 C -0.030 4.030 20 C -0.157 4.157 21 C -0.150 4.150 22 H 0.107 0.893 23 C 0.017 3.983 24 F -0.211 7.211 25 C -0.014 4.014 26 C -0.201 4.201 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 28.604 -10.825 -0.484 30.588 hybrid contribution -0.798 0.842 0.322 1.204 sum 27.806 -9.983 -0.162 29.544 Atomic orbital electron populations 1.69727 1.06837 1.29591 1.50281 1.25276 0.95910 1.02118 0.95546 0.85217 0.78595 0.77427 0.79445 1.18594 1.19036 1.19266 1.20721 0.78107 0.96167 1.52662 0.90223 1.83507 1.21275 1.27383 1.83331 1.19584 0.93053 0.85197 0.95126 1.21332 1.00232 0.93428 1.10938 1.21124 0.95463 0.96310 0.96609 1.21010 0.93250 0.98311 1.06304 1.19218 0.95040 0.91697 0.97032 1.20659 0.89791 1.07731 0.94075 1.20644 0.80688 0.75255 0.91719 1.90761 1.61871 1.51464 1.41864 1.48550 1.04777 1.73001 1.09383 1.22388 0.87592 1.03880 0.89169 1.22729 0.95582 1.03492 0.93906 1.22910 0.93294 1.01789 0.97052 0.89307 1.21996 0.76973 1.00236 0.99085 1.92751 1.43794 1.90153 1.94367 1.22145 0.90759 1.01708 0.86805 1.20256 0.90651 0.98971 1.10261 0.90540 0.87416 0.84048 0.83365 0.85903 0.84070 0.89988 0.88682 0.88434 0.88732 0.89432 0.88315 0.89969 0.92170 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.67 13.96 21.61 0.30 -56.36 16 2 C 0.01 0.58 5.49 84.83 0.47 1.04 16 3 Si 0.97 47.05 28.62 68.60 1.96 49.01 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.40 -24.65 9.95 67.92 0.68 -23.97 16 8 H 0.08 5.13 5.44 -2.91 -0.02 5.12 16 9 O -0.25 -14.22 8.59 -22.78 -0.20 -14.42 16 10 C 0.12 5.99 6.65 22.58 0.15 6.14 16 11 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 12 C -0.08 -2.85 10.04 22.25 0.22 -2.63 16 13 C -0.17 -5.44 9.70 22.30 0.22 -5.22 16 14 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 15 C -0.08 -1.79 5.02 29.10 0.15 -1.64 16 16 C 0.53 13.66 7.84 87.66 0.69 14.35 16 17 O -0.58 -21.84 16.29 -3.02 -0.05 -21.89 16 18 N -0.62 -10.96 3.33 -811.84 -2.70 -13.66 16 19 C 0.09 0.80 6.49 86.73 0.56 1.36 16 20 C -0.12 -0.77 6.34 31.78 0.20 -0.57 16 21 C -0.13 -1.27 3.39 -9.41 -0.03 -1.30 16 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 23 C 0.07 0.56 6.97 71.98 0.50 1.06 16 24 F -0.23 -3.09 17.27 44.97 0.78 -2.31 16 25 C 0.11 1.64 6.37 86.85 0.55 2.20 16 26 C -0.18 -7.58 9.65 22.39 0.22 -7.36 16 27 H 0.28 15.98 8.31 -92.70 -0.77 15.21 16 28 H 0.11 5.52 5.64 -2.91 -0.02 5.50 16 29 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 31 H 0.12 2.11 8.08 -2.39 -0.02 2.09 16 32 H 0.14 1.87 8.08 -2.38 -0.02 1.85 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.09 0.38 8.01 -2.39 -0.02 0.36 16 37 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.10 0.40 8.11 -2.38 -0.02 0.38 16 39 H 0.08 1.05 8.04 -2.39 -0.02 1.03 16 40 H 0.06 1.20 8.04 -2.39 -0.02 1.18 16 41 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -80.98 349.44 5.82 -75.16 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.03 Total: 13.16 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.69 Total: -28.69 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -2.40 Total: -70.03 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.24 Total: -36.31 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.96 Total: 49.01 kcal Total: -80.98 5.82 -75.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881671231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.876 kcal (2) G-P(sol) polarization free energy of solvation -80.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds