Wall clock time and date at job start Fri Apr 10 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86794 * 119.99863 * 2 1 4 4 H 1.48502 * 109.47464 * 239.99844 * 3 2 1 5 5 H 1.48498 * 109.47497 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46996 * 119.99991 * 3 2 1 7 7 C 1.38655 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99720 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99799 * 185.05605 * 9 7 2 11 11 C 1.38882 * 120.07045 * 354.46097 * 10 9 7 12 12 C 1.38099 * 119.93163 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06811 * 359.97341 * 12 11 10 14 14 C 1.50703 * 119.93162 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.46662 * 90.00026 * 14 13 12 16 16 C 1.45887 * 111.00439 * 294.42494 * 15 14 13 17 17 C 1.51412 * 108.99097 * 218.28432 * 16 15 14 18 18 C 1.53914 * 109.09783 * 265.83172 * 17 16 15 19 19 C 1.51806 * 110.75738 * 39.60362 * 18 17 16 20 20 O 1.20760 * 118.80052 * 221.38700 * 19 18 17 21 21 C 1.49267 * 122.39731 * 41.35918 * 19 18 17 22 22 H 1.09004 * 109.43555 * 31.62659 * 21 19 18 23 23 F 1.39905 * 109.40227 * 151.51822 * 21 19 18 24 24 C 1.41608 * 110.99963 * 66.05297 * 15 14 13 25 25 C 1.38309 * 120.13978 * 0.28420 * 13 12 11 26 26 C 1.38100 * 120.06530 * 359.48056 * 25 13 12 27 27 H 0.96994 * 120.00305 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.03229 * 359.95698 * 11 10 9 29 29 H 1.08002 * 119.96740 * 179.97438 * 12 11 10 30 30 H 1.09003 * 109.47028 * 330.00712 * 14 13 12 31 31 H 1.09001 * 109.47408 * 210.00260 * 14 13 12 32 32 H 1.08997 * 109.54867 * 338.14252 * 16 15 14 33 33 H 1.09001 * 109.54939 * 98.43493 * 16 15 14 34 34 H 1.09005 * 109.53545 * 145.94409 * 17 16 15 35 35 H 1.09002 * 109.59719 * 25.75686 * 17 16 15 36 36 H 1.09001 * 109.21748 * 279.27452 * 18 17 16 37 37 H 1.09001 * 109.18739 * 159.90843 * 18 17 16 38 38 H 1.09005 * 109.43801 * 287.40038 * 24 15 14 39 39 H 1.08997 * 109.44213 * 47.27964 * 24 15 14 40 40 H 1.07993 * 119.96410 * 179.72303 * 25 13 12 41 41 H 1.07995 * 120.03398 * 180.25393 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5047 0.1045 11 6 3.4572 -3.4395 0.0921 12 6 4.2024 -4.5972 0.2007 13 6 3.5686 -5.8203 0.3225 14 6 4.3848 -7.0817 0.4403 15 7 4.6571 -7.3580 1.8571 16 6 5.5099 -6.3259 2.4366 17 6 6.4883 -6.9748 3.3929 18 6 5.9089 -6.9233 4.8179 19 6 4.4158 -7.1972 4.8019 20 8 3.6953 -6.5352 5.5096 21 6 3.8059 -8.2545 3.9428 22 1 4.5117 -9.0765 3.8231 23 9 2.6374 -8.7289 4.5487 24 6 3.4625 -7.6636 2.5533 25 6 2.1872 -5.8891 0.3299 26 6 1.4365 -4.7345 0.2264 27 1 -0.4850 0.8400 0.0004 28 1 3.9527 -2.4847 -0.0028 29 1 5.2812 -4.5472 0.1907 30 1 5.3271 -6.9559 -0.0930 31 1 3.8308 -7.9148 0.0075 32 1 6.0579 -5.8177 1.6433 33 1 4.8953 -5.6057 2.9767 34 1 7.4361 -6.4371 3.3652 35 1 6.6496 -8.0129 3.1024 36 1 6.0880 -5.9355 5.2426 37 1 6.4047 -7.6738 5.4336 38 1 2.8744 -6.7548 2.6809 39 1 2.8857 -8.3910 1.9822 40 1 1.6953 -6.8461 0.4205 41 1 0.3580 -4.7884 0.2364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:31 Heat of formation + Delta-G solvation = -99.972304 kcal Electronic energy + Delta-G solvation = -25446.654651 eV Core-core repulsion = 21627.021069 eV Total energy + Delta-G solvation = -3819.633582 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.92171 -41.37911 -40.70681 -39.46719 -37.75307 -34.74593 -34.25091 -32.50535 -31.75247 -30.74966 -27.95937 -27.26478 -25.99091 -24.79587 -23.58849 -22.50959 -21.40030 -20.41062 -19.89627 -18.86724 -18.03067 -17.78574 -17.24991 -16.66031 -16.55003 -16.29360 -16.18845 -15.74095 -15.60555 -15.44711 -15.30700 -15.04686 -14.61687 -14.52198 -14.39246 -14.03873 -13.80817 -13.61997 -13.51728 -13.02824 -12.78883 -12.51374 -12.48433 -12.35155 -12.18748 -12.12072 -12.02399 -11.72757 -11.70614 -11.20534 -10.83059 -10.62046 -9.83346 -9.39570 -8.94482 -8.51809 -6.20873 0.53572 0.61203 0.66832 1.30818 1.41963 1.47831 2.13873 2.54324 2.72803 2.90593 3.14712 3.39354 3.47228 3.72287 3.85477 3.87632 4.01489 4.02682 4.12056 4.15228 4.19891 4.40693 4.48630 4.54952 4.59487 4.66359 4.72488 4.76007 4.83152 4.97088 4.97673 5.08791 5.10790 5.18911 5.24635 5.42861 5.51837 5.66651 5.70344 5.97498 6.01159 6.18845 6.22657 6.29465 6.92330 7.73149 8.71389 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.003521 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.134186 B = 7950.382591 C = 8120.308397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.246 4.246 12 C -0.055 4.055 13 C -0.199 4.199 14 C 0.121 3.879 15 N -0.536 5.536 16 C 0.048 3.952 17 C -0.103 4.103 18 C -0.158 4.158 19 C 0.330 3.670 20 O -0.498 6.498 21 C 0.045 3.955 22 H 0.162 0.838 23 F -0.212 7.212 24 C 0.064 3.936 25 C -0.059 4.059 26 C -0.213 4.213 27 H 0.273 0.727 28 H 0.117 0.883 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.008 0.992 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.010 0.990 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.212 -18.743 3.889 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.177 1.177 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.265 4.265 12 C -0.073 4.073 13 C -0.201 4.201 14 C -0.005 4.005 15 N -0.258 5.258 16 C -0.079 4.079 17 C -0.140 4.140 18 C -0.196 4.196 19 C 0.207 3.793 20 O -0.374 6.374 21 C 0.008 3.992 22 H 0.179 0.821 23 F -0.193 7.193 24 C -0.066 4.066 25 C -0.077 4.077 26 C -0.232 4.232 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.165 0.835 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.026 0.974 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.028 0.972 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.641 -18.621 4.310 26.010 hybrid contribution -1.358 2.118 0.175 2.522 sum 16.283 -16.504 4.484 23.614 Atomic orbital electron populations 1.70184 1.08127 1.28946 1.48709 1.26647 0.96871 1.02881 0.95736 0.84640 0.77422 0.74099 0.80001 1.17739 1.19551 1.18313 1.21795 0.92510 0.81429 1.53486 0.88072 1.83942 1.36158 1.12714 1.81364 1.19996 0.91920 0.87872 0.94126 1.21300 0.92904 1.00422 1.11908 1.21058 0.99897 0.90771 0.95590 1.20632 0.93927 0.97106 1.08429 1.21169 0.99835 0.92241 0.87268 1.58680 1.18687 1.45296 1.03108 1.21931 0.95036 0.91880 0.99093 1.21595 0.98109 1.04688 0.89652 1.22615 0.89774 1.05270 1.01893 1.26100 0.93950 0.81199 0.78021 1.90468 1.64994 1.44817 1.37081 1.22469 0.84936 0.99270 0.92518 0.82108 1.92831 1.52013 1.89447 1.85017 1.21703 0.92555 1.00130 0.92243 1.20954 0.93939 0.96499 0.96321 1.20485 0.99767 0.91116 1.11882 0.91792 0.86517 0.83550 0.87251 0.88079 0.88533 0.97380 0.87896 0.87174 0.89888 0.84783 0.97231 0.86468 0.83884 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.91 13.67 21.61 0.30 -57.62 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 43.48 29.55 68.60 2.03 45.50 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.42 -24.78 9.49 67.92 0.64 -24.14 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 9 O -0.24 -14.61 9.76 -22.75 -0.22 -14.83 16 10 C 0.11 5.68 6.65 22.58 0.15 5.83 16 11 C -0.25 -10.60 9.17 22.39 0.21 -10.40 16 12 C -0.05 -1.72 8.74 22.25 0.19 -1.53 16 13 C -0.20 -5.47 4.41 -19.83 -0.09 -5.56 16 14 C 0.12 2.02 5.27 85.56 0.45 2.47 16 15 N -0.54 -8.59 3.92 -916.19 -3.59 -12.18 16 16 C 0.05 0.79 4.25 85.98 0.37 1.16 16 17 C -0.10 -0.96 5.87 30.38 0.18 -0.78 16 18 C -0.16 -2.11 6.06 30.51 0.18 -1.93 16 19 C 0.33 7.63 5.08 29.01 0.15 7.77 16 20 O -0.50 -17.25 17.40 -1.45 -0.03 -17.27 16 21 C 0.05 0.88 3.74 30.03 0.11 0.99 16 22 H 0.16 1.68 8.14 -2.38 -0.02 1.66 16 23 F -0.21 -5.63 16.77 44.97 0.75 -4.88 16 24 C 0.06 1.30 4.23 87.90 0.37 1.67 16 25 C -0.06 -1.91 8.32 22.25 0.19 -1.73 16 26 C -0.21 -9.37 9.99 22.39 0.22 -9.14 16 27 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 29 H 0.15 3.42 7.13 -2.91 -0.02 3.40 16 30 H 0.11 1.36 7.87 -2.39 -0.02 1.35 16 31 H 0.10 1.36 7.86 -2.39 -0.02 1.34 16 32 H 0.10 1.38 6.21 -2.39 -0.01 1.36 16 33 H 0.01 0.20 6.91 -2.39 -0.02 0.18 16 34 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.11 0.60 7.96 -2.39 -0.02 0.58 16 36 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 37 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.01 0.28 6.91 -2.38 -0.02 0.27 16 39 H 0.12 1.95 7.84 -2.39 -0.02 1.93 16 40 H 0.14 3.68 8.05 -2.91 -0.02 3.66 16 41 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -82.25 335.68 4.08 -78.17 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.05 Total: 19.34 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 3.79 Total: -36.24 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -3.30 Total: -69.80 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.25 Total: -32.10 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.75 Total: -4.88 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -82.25 4.08 -78.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.800 kcal (2) G-P(sol) polarization free energy of solvation -82.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds