Wall clock time and date at job start Fri Apr 10 2020 21:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86793 * 120.00353 * 2 1 4 4 H 1.48500 * 109.47245 * 275.25429 * 3 2 1 5 5 H 1.48501 * 109.47047 * 35.25393 * 3 2 1 6 6 H 1.48495 * 109.47229 * 155.25389 * 3 2 1 7 7 C 1.39925 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00042 * 340.73948 * 7 2 1 9 9 C 1.41291 * 120.00463 * 160.46388 * 7 2 1 10 10 C 1.40641 * 120.22473 * 334.90953 * 9 7 2 11 11 C 1.38146 * 119.70612 * 179.74216 * 10 9 7 12 12 N 1.40008 * 119.90969 * 180.27081 * 11 10 9 13 13 C 1.34780 * 119.99698 * 146.16782 * 12 11 10 14 14 O 1.21287 * 120.00146 * 355.44224 * 13 12 11 15 15 C 1.50705 * 119.99812 * 175.45209 * 13 12 11 16 16 C 1.52992 * 109.46998 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.48028 * 304.97012 * 16 15 13 18 18 C 1.53096 * 109.47851 * 184.94445 * 16 15 13 19 19 C 1.53182 * 109.16044 * 182.41029 * 18 16 15 20 20 C 1.53170 * 109.04184 * 56.97556 * 19 18 16 21 21 C 1.53099 * 109.16186 * 303.02209 * 20 19 18 22 22 O 1.42897 * 109.48559 * 64.99685 * 16 15 13 23 23 C 1.39367 * 120.18008 * 0.53377 * 11 10 9 24 24 C 1.38364 * 120.46903 * 359.73531 * 23 11 10 25 25 C 1.38010 * 120.28752 * 359.97438 * 24 23 11 26 26 F 1.35105 * 120.09322 * 179.97438 * 25 24 23 27 27 H 0.97003 * 120.00104 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.14913 * 359.97438 * 10 9 7 29 29 H 0.96998 * 120.00466 * 326.16567 * 12 11 10 30 30 H 1.09001 * 109.46702 * 299.99521 * 15 13 12 31 31 H 1.09002 * 109.47374 * 59.99284 * 15 13 12 32 32 H 1.09001 * 109.51898 * 302.30932 * 18 16 15 33 33 H 1.08994 * 109.52365 * 62.50013 * 18 16 15 34 34 H 1.09005 * 109.54106 * 297.10708 * 19 18 16 35 35 H 1.08999 * 109.54007 * 176.84531 * 19 18 16 36 36 H 1.08999 * 109.52603 * 183.11089 * 20 19 18 37 37 H 1.09004 * 109.57585 * 62.95761 * 20 19 18 38 38 H 1.08997 * 109.47966 * 297.62260 * 21 20 19 39 39 H 1.09002 * 109.48576 * 177.59743 * 21 20 19 40 40 H 1.08002 * 119.76817 * 179.71936 * 23 11 10 41 41 H 1.07998 * 119.85902 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.3791 2.1104 -1.3942 5 1 1.5000 2.6180 0.8081 6 1 3.5912 1.4105 0.5860 7 6 2.0081 -1.2118 -0.0005 8 1 1.5134 -2.1211 0.3076 9 6 3.3600 -1.2470 -0.4097 10 6 3.8609 -0.2657 -1.2840 11 6 5.1858 -0.3073 -1.6729 12 7 5.6903 0.6706 -2.5386 13 6 6.9663 1.0865 -2.4149 14 8 7.6525 0.6754 -1.5033 15 6 7.5404 2.0627 -3.4093 16 6 8.9941 2.3681 -3.0431 17 1 9.0433 2.7190 -2.0123 18 6 9.5392 3.4512 -3.9778 19 6 11.0121 3.7083 -3.6443 20 6 11.7883 2.3932 -3.7632 21 6 11.1562 1.3510 -2.8368 22 8 9.7795 1.1823 -3.1809 23 6 6.0202 -1.3232 -1.2103 24 6 5.5338 -2.2955 -0.3544 25 6 4.2150 -2.2691 0.0512 26 9 3.7440 -3.2208 0.8866 27 1 -0.4850 0.8401 0.0004 28 1 3.2135 0.5190 -1.6467 29 1 5.1215 1.0487 -3.2274 30 1 7.5004 1.6291 -4.4086 31 1 6.9596 2.9849 -3.3900 32 1 9.4529 3.1172 -5.0117 33 1 8.9692 4.3702 -3.8420 34 1 11.0942 4.0895 -2.6264 35 1 11.4219 4.4380 -4.3425 36 1 12.8266 2.5556 -3.4740 37 1 11.7484 2.0373 -4.7927 38 1 11.2338 1.6887 -1.8033 39 1 11.6781 0.4007 -2.9489 40 1 7.0538 -1.3519 -1.5222 41 1 6.1891 -3.0784 -0.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180414406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:46 Heat of formation + Delta-G solvation = -142.126872 kcal Electronic energy + Delta-G solvation = -25038.160077 eV Core-core repulsion = 21216.698536 eV Total energy + Delta-G solvation = -3821.461541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.29259 -41.44353 -40.16805 -38.94361 -36.04776 -35.19220 -34.47472 -33.83334 -32.49501 -30.52664 -28.79182 -27.18757 -25.39466 -24.03115 -23.87396 -22.44085 -21.26082 -21.12740 -19.46145 -18.69158 -18.17466 -17.65210 -17.50003 -16.89491 -16.77122 -16.51830 -16.07507 -15.76927 -15.64580 -15.33471 -15.25034 -15.00932 -14.62097 -14.09665 -13.93102 -13.85380 -13.69109 -13.51600 -13.32534 -13.14372 -12.89229 -12.73343 -12.45342 -12.14187 -12.10565 -11.93242 -11.70063 -11.62606 -11.23112 -11.06196 -11.02501 -10.70755 -10.28121 -9.73358 -9.02282 -8.85204 -6.61650 0.44004 0.62681 1.18461 1.34967 1.46119 1.72316 2.06285 2.15030 2.50123 2.88026 3.28029 3.67543 3.75631 3.86196 3.97678 4.00058 4.08586 4.15894 4.26071 4.35581 4.48417 4.51599 4.57299 4.60434 4.72480 4.78931 4.82296 4.88701 4.92967 5.00834 5.10918 5.15387 5.16609 5.21274 5.42760 5.47435 5.58269 5.61476 5.71728 5.99910 6.19680 6.38470 6.54674 6.59469 6.64123 7.27755 8.05837 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.003585 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.526262 B = 7809.314495 C = 8828.162032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.052 3.948 3 Si 0.968 3.032 4 H -0.235 1.235 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.472 4.472 8 H 0.056 0.944 9 C 0.066 3.934 10 C -0.254 4.254 11 C 0.183 3.817 12 N -0.668 5.668 13 C 0.505 3.495 14 O -0.551 6.551 15 C -0.125 4.125 16 C 0.100 3.900 17 H 0.045 0.955 18 C -0.144 4.144 19 C -0.124 4.124 20 C -0.151 4.151 21 C 0.055 3.945 22 O -0.395 6.395 23 C -0.210 4.210 24 C -0.092 4.092 25 C -0.056 4.056 26 F -0.167 7.167 27 H 0.300 0.700 28 H 0.122 0.878 29 H 0.423 0.577 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.214 12.825 -11.968 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.166 4.166 3 Si 0.791 3.209 4 H -0.160 1.160 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.062 3.938 10 C -0.275 4.275 11 C 0.088 3.912 12 N -0.315 5.315 13 C 0.294 3.706 14 O -0.428 6.428 15 C -0.164 4.164 16 C 0.042 3.958 17 H 0.063 0.937 18 C -0.181 4.181 19 C -0.162 4.162 20 C -0.189 4.189 21 C -0.021 4.021 22 O -0.315 6.315 23 C -0.231 4.231 24 C -0.111 4.111 25 C -0.076 4.076 26 F -0.146 7.146 27 H 0.111 0.889 28 H 0.139 0.861 29 H 0.261 0.739 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.142 0.858 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.348 12.440 -11.388 24.922 hybrid contribution -0.588 0.052 0.524 0.789 sum 17.760 12.493 -10.864 24.280 Atomic orbital electron populations 1.69707 1.09210 1.32172 1.34344 1.26884 0.95424 1.04245 0.89998 0.85481 0.78977 0.75953 0.80513 1.15964 1.20076 1.18871 1.19350 0.94418 0.96306 1.39935 0.92577 1.17606 0.92651 0.91784 0.91736 1.20586 0.95613 1.04651 1.06691 1.17472 0.91990 0.88953 0.92742 1.43614 1.13754 1.39532 1.34572 1.21558 0.80521 0.82237 0.86262 1.90715 1.59565 1.57713 1.34779 1.21876 0.95146 1.00175 0.99213 1.21889 0.89424 0.86088 0.98440 0.93679 1.22194 0.96984 0.98804 1.00134 1.21619 0.94832 0.97377 1.02335 1.22168 1.00348 0.95666 1.00670 1.22644 0.81726 1.00364 0.97396 1.87941 1.20612 1.34306 1.88611 1.20386 0.99899 0.96555 1.06279 1.20749 0.92748 0.99555 0.98059 1.18031 0.93618 0.94383 1.01568 1.91265 1.89609 1.63161 1.70601 0.88862 0.86098 0.73919 0.85561 0.83778 0.90054 0.88815 0.92121 0.89676 0.89659 0.90936 0.94202 0.88908 0.85781 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.19 13.93 21.82 0.30 -43.88 16 2 C 0.05 2.72 5.41 85.25 0.46 3.18 16 3 Si 0.97 41.04 24.43 68.60 1.68 42.71 16 4 H -0.24 -8.57 6.64 99.48 0.66 -7.91 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.26 -12.13 6.79 99.48 0.68 -11.46 16 7 C -0.47 -27.06 9.30 23.43 0.22 -26.84 16 8 H 0.06 3.54 7.89 -2.91 -0.02 3.52 16 9 C 0.07 3.51 5.22 -21.26 -0.11 3.40 16 10 C -0.25 -11.70 7.07 22.83 0.16 -11.54 16 11 C 0.18 7.60 6.26 38.08 0.24 7.84 16 12 N -0.67 -20.78 5.34 -303.60 -1.62 -22.40 16 13 C 0.50 15.17 7.45 87.66 0.65 15.83 16 14 O -0.55 -21.69 13.11 10.74 0.14 -21.55 16 15 C -0.12 -2.25 5.41 29.85 0.16 -2.09 16 16 C 0.10 2.01 2.19 30.62 0.07 2.08 16 17 H 0.05 1.08 7.96 -2.39 -0.02 1.06 16 18 C -0.14 -1.81 5.42 30.69 0.17 -1.64 16 19 C -0.12 -1.50 6.03 30.71 0.19 -1.31 16 20 C -0.15 -2.05 6.14 30.68 0.19 -1.86 16 21 C 0.06 1.10 6.84 72.02 0.49 1.59 16 22 O -0.40 -10.07 9.64 -135.19 -1.30 -11.37 16 23 C -0.21 -9.13 8.66 22.57 0.20 -8.94 16 24 C -0.09 -4.14 10.00 22.25 0.22 -3.92 16 25 C -0.06 -2.87 7.31 22.89 0.17 -2.70 16 26 F -0.17 -8.83 16.71 44.97 0.75 -8.08 16 27 H 0.30 14.06 8.30 -92.71 -0.77 13.29 16 28 H 0.12 5.21 4.18 -2.91 -0.01 5.20 16 29 H 0.42 9.65 8.82 -92.71 -0.82 8.83 16 30 H 0.13 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.12 5.29 6.43 -2.91 -0.02 5.27 16 41 H 0.13 5.27 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -71.36 335.46 3.58 -67.77 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.17 Total: 23.70 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 3.47 Total: -26.91 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -1.32 Total: -66.28 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.16 Total: -32.92 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.75 Total: -8.08 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.68 Total: 42.71 kcal Total: -71.36 3.58 -67.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180414406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.352 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds