Wall clock time and date at job start Fri Apr 10 2020 21:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86797 * 119.99943 * 2 1 4 4 H 1.48499 * 109.46926 * 239.99304 * 3 2 1 5 5 H 1.48502 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46917 * 119.99699 * 3 2 1 7 7 C 1.39927 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99447 * 195.58779 * 7 2 1 9 9 C 1.41284 * 120.00285 * 15.59490 * 7 2 1 10 10 C 1.40640 * 120.22871 * 29.22948 * 9 7 2 11 11 C 1.38151 * 119.70746 * 180.02562 * 10 9 7 12 12 N 1.40010 * 119.90764 * 179.97438 * 11 10 9 13 13 C 1.34784 * 120.00103 * 33.20126 * 12 11 10 14 14 O 1.21286 * 119.99565 * 5.09342 * 13 12 11 15 15 C 1.50693 * 119.99831 * 185.09397 * 13 12 11 16 16 H 1.09000 * 109.47399 * 299.99899 * 15 13 12 17 17 C 1.53004 * 109.47531 * 60.00002 * 15 13 12 18 18 C 1.52998 * 109.47356 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47028 * 300.00306 * 18 17 15 20 20 C 1.53001 * 109.47524 * 59.99951 * 19 18 17 21 21 C 1.52999 * 109.46689 * 299.99855 * 20 19 18 22 22 H 1.09009 * 109.46447 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47451 * 299.99648 * 21 20 19 24 24 C 1.39361 * 120.17912 * 0.02562 * 11 10 9 25 25 C 1.38363 * 120.47113 * 359.96020 * 24 11 10 26 26 C 1.38006 * 120.28634 * 0.03704 * 25 24 11 27 27 F 1.35104 * 120.08852 * 180.25798 * 26 25 24 28 28 H 0.97003 * 120.00148 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.14919 * 0.02562 * 10 9 7 30 30 H 0.96998 * 120.00271 * 213.19854 * 12 11 10 31 31 H 1.08998 * 109.46567 * 299.99949 * 17 15 13 32 32 H 1.09000 * 109.46863 * 59.99569 * 17 15 13 33 33 H 1.08996 * 109.46986 * 180.02562 * 18 17 15 34 34 H 1.09006 * 109.46652 * 59.99851 * 18 17 15 35 35 H 1.08997 * 109.47195 * 299.99548 * 19 18 17 36 36 H 1.09003 * 109.47444 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.46922 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.46989 * 60.00099 * 20 19 18 39 39 H 0.96702 * 113.99793 * 300.00333 * 23 21 20 40 40 H 1.08003 * 119.76283 * 179.97438 * 24 11 10 41 41 H 1.08000 * 119.85592 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0964 1.6963 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0962 1.6964 1.2126 7 6 2.0081 -1.2118 0.0005 8 1 3.0583 -1.2289 0.2519 9 6 1.3407 -2.4130 -0.3278 10 6 0.2429 -2.3956 -1.2068 11 6 -0.4022 -3.5764 -1.5201 12 7 -1.4958 -3.5638 -2.3942 13 6 -1.5400 -2.6739 -3.4055 14 8 -0.5924 -1.9466 -3.6151 15 6 -2.7668 -2.5828 -4.2759 16 1 -2.9395 -3.5429 -4.7622 17 6 -3.9784 -2.2228 -3.4136 18 6 -5.2238 -2.1297 -4.2974 19 6 -5.0152 -1.0493 -5.3604 20 6 -3.8037 -1.4093 -6.2227 21 6 -2.5583 -1.5024 -5.3389 22 1 -1.6951 -1.7584 -5.9534 23 8 -2.3318 -0.2439 -4.7009 24 6 0.0321 -4.7798 -0.9676 25 6 1.1115 -4.8056 -0.1023 26 6 1.7701 -3.6375 0.2239 27 9 2.8268 -3.6680 1.0651 28 1 -0.4850 0.8401 -0.0004 29 1 -0.0944 -1.4632 -1.6350 30 1 -2.2217 -4.1955 -2.2720 31 1 -4.1267 -2.9923 -2.6560 32 1 -3.8057 -1.2627 -2.9273 33 1 -6.0868 -1.8727 -3.6831 34 1 -5.3966 -3.0897 -4.7840 35 1 -4.8425 -0.0894 -4.8738 36 1 -5.9027 -0.9826 -5.9898 37 1 -3.6549 -0.6393 -6.9798 38 1 -3.9766 -2.3692 -6.7093 39 1 -2.1912 0.4891 -5.3158 40 1 -0.4774 -5.6990 -1.2168 41 1 1.4399 -5.7439 0.3198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181092644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:50 Heat of formation + Delta-G solvation = -152.759201 kcal Electronic energy + Delta-G solvation = -25818.844259 eV Core-core repulsion = 21996.921665 eV Total energy + Delta-G solvation = -3821.922594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.17579 -41.57554 -39.76240 -38.44737 -36.20552 -35.88888 -34.91378 -32.30484 -31.70541 -30.72586 -29.49284 -27.34314 -24.86889 -23.68600 -23.36779 -22.47361 -21.20644 -20.59588 -19.61442 -18.20282 -17.95387 -17.78797 -17.64963 -16.84410 -16.47893 -16.23561 -15.93277 -15.66615 -15.54556 -15.24951 -14.85724 -14.54849 -14.20740 -13.86596 -13.78688 -13.60433 -13.54274 -13.46474 -13.24283 -12.86845 -12.80289 -12.62817 -12.30854 -12.20713 -12.06197 -11.94943 -11.59407 -11.43128 -11.22027 -11.05682 -10.83739 -10.62072 -10.39141 -9.47773 -8.78591 -8.58867 -6.45766 0.66104 0.90206 1.29579 1.41940 1.43721 1.82613 2.15327 2.28705 2.65660 3.32493 3.50547 3.68733 3.73549 3.95421 4.04475 4.13964 4.27350 4.30304 4.31936 4.43046 4.49857 4.61868 4.64008 4.82550 4.96689 4.98515 5.05058 5.06524 5.10993 5.20955 5.23355 5.25825 5.29681 5.37248 5.58104 5.62639 5.76172 5.79221 6.03845 6.20012 6.51458 6.69184 6.78101 6.87292 6.97644 7.43514 8.25282 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.004923 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.873664 B = 5686.445658 C = 7098.797682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.254 1.254 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.064 3.936 10 C -0.161 4.161 11 C 0.140 3.860 12 N -0.659 5.659 13 C 0.501 3.499 14 O -0.552 6.552 15 C -0.089 4.089 16 H 0.142 0.858 17 C -0.104 4.104 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.119 3.881 22 H 0.045 0.955 23 O -0.574 6.574 24 C -0.222 4.222 25 C -0.104 4.104 26 C -0.072 4.072 27 F -0.170 7.170 28 H 0.287 0.713 29 H 0.115 0.885 30 H 0.420 0.580 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.383 0.617 40 H 0.150 0.850 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 -4.363 -12.336 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.186 1.186 6 H -0.178 1.178 7 C -0.529 4.529 8 H 0.089 0.911 9 C 0.060 3.940 10 C -0.182 4.182 11 C 0.046 3.954 12 N -0.306 5.306 13 C 0.290 3.710 14 O -0.428 6.428 15 C -0.110 4.110 16 H 0.159 0.841 17 C -0.142 4.142 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.177 4.177 21 C 0.059 3.941 22 H 0.063 0.937 23 O -0.381 6.381 24 C -0.243 4.243 25 C -0.123 4.123 26 C -0.092 4.092 27 F -0.150 7.150 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.258 0.742 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.231 0.769 40 H 0.167 0.833 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.808 -4.039 -11.939 18.695 hybrid contribution 0.800 0.994 0.147 1.284 sum -13.008 -3.045 -11.792 17.820 Atomic orbital electron populations 1.69831 1.08855 1.30613 1.34709 1.26718 0.95620 1.04443 0.91168 0.85273 0.78920 0.75618 0.80064 1.18869 1.18558 1.17821 1.19602 0.97391 0.92361 1.43506 0.91094 1.17861 0.93238 0.92139 0.90731 1.21048 1.00112 0.97202 0.99865 1.17779 0.90737 0.93737 0.93110 1.43381 1.21683 1.37220 1.28277 1.21522 0.89696 0.78946 0.80872 1.90743 1.39203 1.42261 1.70632 1.21521 0.91833 1.01702 0.95923 0.84072 1.21433 0.93351 1.01551 0.97887 1.21519 0.95840 1.00362 0.96985 1.21477 0.97842 0.98754 0.97409 1.22209 0.93974 1.03946 0.97611 1.21568 0.96700 0.83796 0.91992 0.93737 1.86642 1.94640 1.18453 1.38331 1.20375 1.01618 0.95974 1.06296 1.20675 0.96412 0.95886 0.99356 1.18265 0.93474 0.96215 1.01291 1.91227 1.55952 1.97438 1.70363 0.90217 0.86691 0.74229 0.90498 0.94152 0.90970 0.89408 0.93249 0.90048 0.90384 0.88872 0.76946 0.83268 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.74 11.15 21.82 0.24 -46.50 16 2 C 0.04 2.03 5.15 85.25 0.44 2.47 16 3 Si 0.98 42.81 29.59 68.60 2.03 44.84 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.50 -30.18 8.73 23.43 0.20 -29.97 16 8 H 0.07 4.24 7.80 -2.91 -0.02 4.22 16 9 C 0.06 3.80 5.53 -21.27 -0.12 3.69 16 10 C -0.16 -9.11 7.26 22.84 0.17 -8.94 16 11 C 0.14 6.48 6.28 38.08 0.24 6.72 16 12 N -0.66 -23.67 5.20 -303.60 -1.58 -25.25 16 13 C 0.50 18.89 6.74 87.65 0.59 19.48 16 14 O -0.55 -27.31 12.94 14.43 0.19 -27.13 16 15 C -0.09 -2.21 2.36 -11.54 -0.03 -2.24 16 16 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.10 -2.37 4.96 30.60 0.15 -2.22 16 18 C -0.11 -1.67 5.92 30.59 0.18 -1.49 16 19 C -0.12 -1.81 5.78 30.59 0.18 -1.64 16 20 C -0.14 -2.14 5.64 30.59 0.17 -1.96 16 21 C 0.12 2.92 2.75 30.59 0.08 3.00 16 22 H 0.04 1.19 8.10 -2.38 -0.02 1.17 16 23 O -0.57 -17.87 10.87 -131.50 -1.43 -19.30 16 24 C -0.22 -9.04 9.96 22.57 0.22 -8.81 16 25 C -0.10 -4.63 10.00 22.24 0.22 -4.41 16 26 C -0.07 -3.90 7.31 22.89 0.17 -3.74 16 27 F -0.17 -9.22 16.76 44.97 0.75 -8.46 16 28 H 0.29 15.11 8.30 -92.71 -0.77 14.34 16 29 H 0.12 7.17 4.76 -2.91 -0.01 7.16 16 30 H 0.42 10.78 8.40 -92.71 -0.78 10.00 16 31 H 0.08 1.54 7.69 -2.39 -0.02 1.52 16 32 H 0.04 1.25 7.68 -2.39 -0.02 1.23 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.38 8.80 9.08 -74.06 -0.67 8.12 16 40 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.14 5.16 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -79.44 336.63 2.71 -76.73 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.37 Total: 35.13 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 2.88 Total: -30.07 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.33 Total: -71.74 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.24 Total: -46.43 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.75 Total: -8.46 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -79.44 2.71 -76.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181092644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.028 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds