Wall clock time and date at job start Fri Apr 10 2020 21:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48501 * 109.46866 * 239.99274 * 3 2 1 5 5 H 1.48504 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47189 * 119.99412 * 3 2 1 7 7 C 1.39915 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00789 * 169.01892 * 7 2 1 9 9 C 1.41303 * 119.99905 * 349.02424 * 7 2 1 10 10 C 1.40632 * 120.22617 * 331.71982 * 9 7 2 11 11 C 1.38147 * 119.70864 * 179.97438 * 10 9 7 12 12 N 1.40004 * 119.91419 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00268 * 146.40342 * 12 11 10 14 14 O 1.21283 * 119.99709 * 354.86817 * 13 12 11 15 15 C 1.50699 * 120.00169 * 174.87345 * 13 12 11 16 16 H 1.09006 * 109.47441 * 59.99864 * 15 13 12 17 17 C 1.52999 * 109.47252 * 299.99922 * 15 13 12 18 18 C 1.52999 * 109.47490 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47191 * 59.99229 * 18 17 15 20 20 C 1.52991 * 109.47648 * 300.00500 * 19 18 17 21 21 C 1.52998 * 109.47210 * 179.97438 * 15 13 12 22 22 H 1.09002 * 109.46690 * 299.99626 * 21 15 13 23 23 O 1.42900 * 109.47179 * 59.99814 * 21 15 13 24 24 C 1.39366 * 120.17956 * 0.26139 * 11 10 9 25 25 C 1.38375 * 120.46729 * 359.48046 * 24 11 10 26 26 C 1.38010 * 120.28624 * 0.51372 * 25 24 11 27 27 F 1.35094 * 120.09568 * 179.76423 * 26 25 24 28 28 H 0.96999 * 120.00168 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.15389 * 0.02562 * 10 9 7 30 30 H 0.97007 * 119.99950 * 326.40632 * 12 11 10 31 31 H 1.09006 * 109.46850 * 300.00304 * 17 15 13 32 32 H 1.09002 * 109.47186 * 59.99585 * 17 15 13 33 33 H 1.09002 * 109.47182 * 180.02562 * 18 17 15 34 34 H 1.09006 * 109.46315 * 299.99558 * 18 17 15 35 35 H 1.08996 * 109.47098 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46702 * 60.00928 * 19 18 17 37 37 H 1.09004 * 109.47418 * 299.99989 * 20 19 18 38 38 H 1.09001 * 109.47713 * 179.97438 * 20 19 18 39 39 H 0.96696 * 113.99774 * 180.02562 * 23 21 15 40 40 H 1.08000 * 119.76965 * 179.74208 * 24 11 10 41 41 H 1.07999 * 119.85756 * 180.28192 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0964 1.6963 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0961 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0733 -1.2204 -0.1776 9 6 1.3211 -2.4241 0.2341 10 6 0.1535 -2.4366 1.0179 11 6 -0.5101 -3.6279 1.2389 12 7 -1.6726 -3.6453 2.0189 13 6 -2.6630 -4.5136 1.7331 14 8 -2.5886 -5.2148 0.7464 15 6 -3.8628 -4.6131 2.6396 16 1 -4.3649 -3.6466 2.6852 17 6 -3.4092 -5.0188 4.0433 18 6 -4.6273 -5.1204 4.9635 19 6 -5.5939 -6.1723 4.4158 20 6 -6.0475 -5.7666 3.0121 21 6 -4.8300 -5.6643 2.0919 22 1 -5.1532 -5.3747 1.0919 23 8 -4.1722 -6.9315 2.0316 24 6 -0.0222 -4.8135 0.6924 25 6 1.1230 -4.8089 -0.0843 26 6 1.8011 -3.6297 -0.3176 27 9 2.9215 -3.6305 -1.0725 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2234 -1.5188 1.4445 30 1 -1.7652 -3.0324 2.7651 31 1 -2.9071 -5.9853 3.9977 32 1 -2.7202 -4.2696 4.4333 33 1 -4.3041 -5.4091 5.9637 34 1 -5.1297 -4.1541 5.0091 35 1 -6.4619 -6.2444 5.0711 36 1 -5.0915 -7.1386 4.3702 37 1 -6.5499 -4.8003 3.0577 38 1 -6.7358 -6.5162 2.6217 39 1 -4.7272 -7.6470 1.6924 40 1 -0.5439 -5.7417 0.8729 41 1 1.4899 -5.7327 -0.5067 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181092658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:56 Heat of formation + Delta-G solvation = -132.190261 kcal Electronic energy + Delta-G solvation = -25367.453741 eV Core-core repulsion = 21546.423084 eV Total energy + Delta-G solvation = -3821.030658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.18277 -40.29097 -38.47893 -36.84846 -35.11792 -34.16722 -33.26758 -31.30139 -29.91247 -29.71890 -27.88554 -25.32291 -23.72708 -22.71105 -21.62233 -21.04899 -19.98376 -19.42810 -17.51839 -17.14023 -16.85760 -16.02621 -15.77323 -15.42896 -15.00538 -14.82624 -14.58877 -14.34165 -14.01781 -13.93694 -13.44570 -13.04758 -12.81581 -12.64671 -12.55162 -12.46445 -11.97283 -11.82042 -11.63432 -11.57285 -11.28034 -11.22205 -11.10428 -10.95172 -10.73221 -10.49556 -10.28566 -10.21914 -9.77872 -9.75164 -9.41366 -9.16976 -8.82281 -7.53308 -6.90594 -6.71352 -4.45509 2.48120 2.75793 3.04111 3.08210 3.11298 3.32334 3.66644 3.90413 4.20264 4.52164 4.56670 4.60604 4.76552 4.98775 5.06255 5.19662 5.24090 5.26904 5.42363 5.46195 5.63004 5.63773 5.77540 5.91733 5.99112 5.99680 6.00211 6.09133 6.16030 6.30959 6.59788 6.77297 6.89016 6.90684 7.15029 7.52012 7.60931 7.68645 7.74989 7.93736 8.01269 8.24224 8.48988 8.73249 8.75190 8.87338 10.14800 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.003655 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.607360 B = 7658.284367 C = 8591.250038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.163 4.163 11 C 0.142 3.858 12 N -0.667 5.667 13 C 0.513 3.487 14 O -0.509 6.509 15 C -0.099 4.099 16 H 0.103 0.897 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.153 4.153 21 C 0.127 3.873 22 H 0.060 0.940 23 O -0.546 6.546 24 C -0.201 4.201 25 C -0.116 4.116 26 C -0.030 4.030 27 F -0.163 7.163 28 H 0.281 0.719 29 H 0.132 0.868 30 H 0.399 0.601 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.371 0.629 40 H 0.113 0.887 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 -5.785 9.897 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.094 3.906 10 C -0.184 4.184 11 C 0.049 3.951 12 N -0.311 5.311 13 C 0.299 3.701 14 O -0.383 6.383 15 C -0.120 4.120 16 H 0.121 0.879 17 C -0.145 4.145 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.190 4.190 21 C 0.067 3.933 22 H 0.077 0.923 23 O -0.350 6.350 24 C -0.222 4.222 25 C -0.135 4.135 26 C -0.051 4.051 27 F -0.142 7.142 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.217 0.783 40 H 0.130 0.870 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.019 -5.791 9.402 16.321 hybrid contribution -0.125 0.877 -0.109 0.893 sum -12.144 -4.914 9.293 16.062 Atomic orbital electron populations 1.69786 1.07428 1.29265 1.36091 1.25872 0.94855 1.01295 0.92192 0.86247 0.79957 0.79754 0.80092 1.18900 1.20304 1.18772 1.19432 0.96281 0.90141 1.42702 0.90001 1.17348 0.92155 0.91150 0.89964 1.20950 0.99358 0.95038 1.03088 1.17613 0.86773 0.94316 0.96358 1.43456 1.16660 1.38205 1.32773 1.20374 0.83651 0.80145 0.85959 1.90709 1.78432 1.42138 1.27041 1.21396 0.95016 0.99701 0.95933 0.87910 1.21451 0.97910 1.03032 0.92130 1.21527 0.96025 0.99245 0.98644 1.21454 0.98776 0.99703 0.95439 1.22284 0.97847 1.02285 0.96626 1.21379 0.90304 0.84534 0.97060 0.92253 1.86609 1.42446 1.17874 1.88068 1.20188 0.98543 0.96484 1.06985 1.20392 0.96472 0.95746 1.00910 1.17949 0.89068 0.95452 1.02585 1.91266 1.50575 1.97422 1.74974 0.90798 0.85006 0.76635 0.90371 0.91454 0.91659 0.91979 0.92301 0.91201 0.91083 0.91559 0.78314 0.86951 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.25 10.82 55.55 0.60 -19.65 16 2 C 0.07 1.86 5.25 -17.34 -0.09 1.77 16 3 Si 0.92 18.63 29.57 -169.99 -5.03 13.60 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.27 8.76 -37.79 -0.33 -12.60 16 8 H 0.08 2.17 7.76 -52.49 -0.41 1.77 16 9 C 0.10 2.64 5.56 -106.78 -0.59 2.05 16 10 C -0.16 -4.08 8.56 -38.71 -0.33 -4.42 16 11 C 0.14 3.28 6.26 -83.74 -0.52 2.75 16 12 N -0.67 -12.34 5.19 -9.90 -0.05 -12.39 16 13 C 0.51 9.19 6.74 -10.99 -0.07 9.12 16 14 O -0.51 -11.17 12.99 -12.71 -0.17 -11.33 16 15 C -0.10 -1.25 2.36 -91.77 -0.22 -1.47 16 16 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.11 -1.18 4.96 -26.73 -0.13 -1.32 16 18 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 19 C -0.12 -0.95 5.78 -26.74 -0.15 -1.11 16 20 C -0.15 -1.28 5.63 -26.76 -0.15 -1.43 16 21 C 0.13 1.49 2.75 -26.75 -0.07 1.41 16 22 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 23 O -0.55 -7.07 10.87 -53.50 -0.58 -7.65 16 24 C -0.20 -4.80 8.66 -39.11 -0.34 -5.13 16 25 C -0.12 -2.80 10.00 -39.61 -0.40 -3.20 16 26 C -0.03 -0.79 7.31 -38.62 -0.28 -1.07 16 27 F -0.16 -4.25 16.75 2.25 0.04 -4.22 16 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 29 H 0.13 3.30 6.19 -52.49 -0.32 2.98 16 30 H 0.40 6.05 8.40 -40.82 -0.34 5.71 16 31 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 32 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.63 7.68 -51.93 -0.40 0.24 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.37 3.27 9.08 45.56 0.41 3.68 16 40 H 0.11 2.67 6.43 -52.49 -0.34 2.33 16 41 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -31.72 336.22 -8.68 -40.40 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -4.71 Total: 11.97 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -3.85 Total: -15.80 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.55 Total: -32.04 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.75 Total: -18.98 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.22 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.72 -8.68 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181092658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.794 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds