Wall clock time and date at job start Fri Apr 10 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86792 * 120.00162 * 2 1 4 4 H 1.48503 * 109.46878 * 274.97440 * 3 2 1 5 5 H 1.48502 * 109.47525 * 34.97429 * 3 2 1 6 6 H 1.48500 * 109.47311 * 154.97539 * 3 2 1 7 7 C 1.39925 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99862 * 163.08726 * 7 2 1 9 9 C 1.41291 * 120.00238 * 343.09693 * 7 2 1 10 10 C 1.40646 * 120.22910 * 334.48009 * 9 7 2 11 11 C 1.38145 * 119.71149 * 180.02562 * 10 9 7 12 12 N 1.40007 * 119.90918 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99958 * 144.40853 * 12 11 10 14 14 O 1.21290 * 120.00026 * 4.44210 * 13 12 11 15 15 C 1.50704 * 120.00086 * 184.44590 * 13 12 11 16 16 H 1.08997 * 109.47044 * 59.99475 * 15 13 12 17 17 C 1.52999 * 109.46875 * 299.99693 * 15 13 12 18 18 C 1.52999 * 109.47070 * 179.97438 * 17 15 13 19 19 C 1.53009 * 109.47089 * 60.00196 * 18 17 15 20 20 C 1.52999 * 109.46680 * 300.00044 * 19 18 17 21 21 C 1.52999 * 109.47395 * 60.00143 * 20 19 18 22 22 H 1.08997 * 109.47066 * 59.99887 * 21 20 19 23 23 O 1.42905 * 109.46889 * 179.97438 * 21 20 19 24 24 C 1.39360 * 120.17842 * 0.02562 * 11 10 9 25 25 C 1.38371 * 120.47012 * 359.95339 * 24 11 10 26 26 C 1.38005 * 120.28702 * 0.04477 * 25 24 11 27 27 F 1.35100 * 120.09106 * 180.25028 * 26 25 24 28 28 H 0.96999 * 119.99593 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.14099 * 0.05173 * 10 9 7 30 30 H 0.97006 * 120.00005 * 324.40734 * 12 11 10 31 31 H 1.08997 * 109.47106 * 299.99743 * 17 15 13 32 32 H 1.09003 * 109.47396 * 60.00032 * 17 15 13 33 33 H 1.08997 * 109.47521 * 300.00196 * 18 17 15 34 34 H 1.08996 * 109.47527 * 179.97438 * 18 17 15 35 35 H 1.08998 * 109.47003 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.46939 * 59.99644 * 19 18 17 37 37 H 1.09007 * 109.47251 * 299.99500 * 20 19 18 38 38 H 1.09003 * 109.47072 * 179.97438 * 20 19 18 39 39 H 0.96696 * 113.99717 * 299.99659 * 23 21 20 40 40 H 1.07999 * 119.76439 * 179.97438 * 24 11 10 41 41 H 1.08005 * 119.85427 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4966 2.6200 0.8025 6 1 3.5887 1.4120 0.5922 7 6 2.0081 -1.2118 0.0005 8 1 3.0531 -1.2322 -0.2715 9 6 1.3475 -2.4088 0.3568 10 6 0.2190 -2.3722 1.1955 11 6 -0.4184 -3.5491 1.5375 12 7 -1.5425 -3.5174 2.3716 13 6 -2.5525 -4.3876 2.1747 14 8 -2.4535 -5.2500 1.3276 15 6 -3.8050 -4.2892 3.0069 16 1 -4.2655 -3.3128 2.8563 17 6 -3.4501 -4.4632 4.4850 18 6 -4.7216 -4.3626 5.3300 19 6 -5.7022 -5.4590 4.9085 20 6 -6.0570 -5.2849 3.4304 21 6 -4.7855 -5.3855 2.5854 22 1 -4.3254 -6.3620 2.7360 23 8 -5.1171 -5.2235 1.2048 24 6 0.0543 -4.7678 1.0545 25 6 1.1637 -4.8125 0.2286 26 6 1.8152 -3.6486 -0.1253 27 9 2.8949 -3.6964 -0.9360 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1478 -1.4280 1.5701 30 1 -1.5942 -2.8690 3.0913 31 1 -2.9897 -5.4396 4.6356 32 1 -2.7519 -3.6819 4.7855 33 1 -5.1818 -3.3861 5.1794 34 1 -4.4690 -4.4870 6.3830 35 1 -6.6078 -5.3876 5.5108 36 1 -5.2420 -6.4355 5.0591 37 1 -6.5172 -4.3083 3.2797 38 1 -6.7552 -6.0662 3.1299 39 1 -5.7362 -5.8859 0.8687 40 1 -0.4489 -5.6839 1.3264 41 1 1.5213 -5.7625 -0.1404 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181092660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:59 Heat of formation + Delta-G solvation = -133.348468 kcal Electronic energy + Delta-G solvation = -25292.694859 eV Core-core repulsion = 21471.613977 eV Total energy + Delta-G solvation = -3821.080881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.16872 -40.26809 -38.40216 -36.81547 -35.59754 -34.18658 -33.29778 -31.35514 -29.77035 -29.62158 -27.87250 -25.32208 -23.76057 -22.69509 -21.61541 -21.01369 -20.11496 -19.49077 -17.52766 -17.25136 -17.12203 -16.03314 -15.77491 -15.30362 -15.04046 -14.86454 -14.46116 -14.08830 -14.03502 -13.90416 -13.67183 -13.35407 -12.97236 -12.66219 -12.57389 -12.33181 -12.02144 -11.74457 -11.64454 -11.60722 -11.40294 -11.19582 -11.03895 -10.95312 -10.81460 -10.49937 -10.42103 -10.24620 -9.87679 -9.76090 -9.38463 -9.11724 -8.79976 -7.56160 -6.94126 -6.74779 -4.43449 2.50811 2.74578 3.04197 3.07816 3.13107 3.28444 3.66631 3.89431 4.10616 4.44910 4.53063 4.54206 4.75869 4.94285 5.07842 5.12426 5.18981 5.20772 5.29288 5.45789 5.59051 5.63443 5.81134 5.83636 5.87640 5.88952 5.97435 6.01189 6.15691 6.18169 6.61618 6.77624 6.88965 6.92129 7.13158 7.51896 7.61814 7.69805 7.76093 7.92683 8.02144 8.24157 8.49091 8.72123 8.75072 8.87673 10.10877 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.003728 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.571078 B = 7509.594550 C = 8370.279435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.099 3.901 10 C -0.167 4.167 11 C 0.142 3.858 12 N -0.667 5.667 13 C 0.514 3.486 14 O -0.510 6.510 15 C -0.099 4.099 16 H 0.102 0.898 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.152 4.152 21 C 0.127 3.873 22 H 0.060 0.940 23 O -0.550 6.550 24 C -0.205 4.205 25 C -0.114 4.114 26 C -0.033 4.033 27 F -0.164 7.164 28 H 0.282 0.718 29 H 0.129 0.871 30 H 0.399 0.601 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.373 0.627 40 H 0.115 0.885 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 -5.182 11.496 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.095 3.905 10 C -0.189 4.189 11 C 0.050 3.950 12 N -0.311 5.311 13 C 0.300 3.700 14 O -0.384 6.384 15 C -0.121 4.121 16 H 0.120 0.880 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.190 4.190 21 C 0.068 3.932 22 H 0.078 0.922 23 O -0.354 6.354 24 C -0.227 4.227 25 C -0.134 4.134 26 C -0.054 4.054 27 F -0.143 7.143 28 H 0.093 0.907 29 H 0.147 0.853 30 H 0.233 0.767 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.219 0.781 40 H 0.133 0.867 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.462 -5.138 10.900 16.631 hybrid contribution -0.033 0.710 0.043 0.712 sum -11.495 -4.428 10.943 16.477 Atomic orbital electron populations 1.69837 1.07564 1.29361 1.34837 1.25901 0.94750 1.01398 0.92100 0.86239 0.80728 0.80273 0.79204 1.19447 1.19982 1.18285 1.19471 0.98101 0.90741 1.40134 0.89847 1.17333 0.91890 0.91001 0.90293 1.20885 1.00345 0.95403 1.02270 1.17609 0.87707 0.94338 0.95358 1.43428 1.17889 1.36396 1.33377 1.20350 0.83848 0.81823 0.84000 1.90694 1.80097 1.34194 1.33389 1.21362 0.94036 1.01504 0.95204 0.88040 1.21541 0.98227 1.03317 0.91821 1.21570 0.95382 0.99387 0.99406 1.21508 0.99338 0.99318 0.95468 1.22324 0.98134 1.02840 0.95739 1.21429 0.92798 0.97417 0.81600 0.92248 1.86652 1.67852 1.56540 1.24386 1.20250 0.99350 0.96151 1.06901 1.20402 0.96843 0.95802 1.00326 1.17902 0.91216 0.94881 1.01381 1.91265 1.53805 1.97330 1.71889 0.90744 0.85331 0.76676 0.91001 0.90595 0.91481 0.91328 0.91659 0.91724 0.91041 0.91533 0.78107 0.86734 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.97 55.55 0.61 -19.53 16 2 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -12.28 8.77 -37.79 -0.33 -12.61 16 8 H 0.08 2.23 7.74 -52.49 -0.41 1.82 16 9 C 0.10 2.68 5.57 -106.78 -0.59 2.08 16 10 C -0.17 -4.23 8.59 -38.71 -0.33 -4.56 16 11 C 0.14 3.30 6.28 -83.74 -0.53 2.78 16 12 N -0.67 -12.43 5.25 -9.90 -0.05 -12.48 16 13 C 0.51 9.35 6.85 -10.99 -0.08 9.27 16 14 O -0.51 -11.26 12.74 -12.69 -0.16 -11.42 16 15 C -0.10 -1.29 2.28 -91.77 -0.21 -1.50 16 16 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.11 -1.09 5.10 -26.73 -0.14 -1.23 16 18 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 19 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 20 C -0.15 -1.33 5.54 -26.73 -0.15 -1.47 16 21 C 0.13 1.55 2.44 -26.73 -0.07 1.48 16 22 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 23 O -0.55 -7.89 12.22 -53.47 -0.65 -8.55 16 24 C -0.21 -4.90 8.70 -39.11 -0.34 -5.24 16 25 C -0.11 -2.77 10.00 -39.62 -0.40 -3.16 16 26 C -0.03 -0.88 7.31 -38.62 -0.28 -1.16 16 27 F -0.16 -4.28 16.72 2.25 0.04 -4.24 16 28 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 29 H 0.13 3.24 6.20 -52.49 -0.33 2.92 16 30 H 0.40 6.06 8.12 -40.82 -0.33 5.73 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.68 7.47 -51.93 -0.39 0.30 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.37 3.61 9.08 45.56 0.41 4.02 16 40 H 0.11 2.68 6.25 -52.49 -0.33 2.35 16 41 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -32.35 337.68 -8.73 -41.08 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.73 Total: 12.18 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -3.84 Total: -15.62 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.56 Total: -32.01 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.82 Total: -19.97 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.04 Total: -4.24 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.35 -8.73 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181092660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.271 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds