Wall clock time and date at job start Fri Apr 10 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86792 * 120.00162 * 2 1 4 4 H 1.48503 * 109.46878 * 274.97440 * 3 2 1 5 5 H 1.48502 * 109.47525 * 34.97429 * 3 2 1 6 6 H 1.48500 * 109.47311 * 154.97539 * 3 2 1 7 7 C 1.39925 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99862 * 163.08726 * 7 2 1 9 9 C 1.41291 * 120.00238 * 343.09693 * 7 2 1 10 10 C 1.40646 * 120.22910 * 334.48009 * 9 7 2 11 11 C 1.38145 * 119.71149 * 180.02562 * 10 9 7 12 12 N 1.40007 * 119.90918 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99958 * 144.40853 * 12 11 10 14 14 O 1.21290 * 120.00026 * 4.44210 * 13 12 11 15 15 C 1.50704 * 120.00086 * 184.44590 * 13 12 11 16 16 H 1.08997 * 109.47044 * 59.99475 * 15 13 12 17 17 C 1.52999 * 109.46875 * 299.99693 * 15 13 12 18 18 C 1.52999 * 109.47070 * 179.97438 * 17 15 13 19 19 C 1.53009 * 109.47089 * 60.00196 * 18 17 15 20 20 C 1.52999 * 109.46680 * 300.00044 * 19 18 17 21 21 C 1.52999 * 109.47395 * 60.00143 * 20 19 18 22 22 H 1.08997 * 109.47066 * 59.99887 * 21 20 19 23 23 O 1.42905 * 109.46889 * 179.97438 * 21 20 19 24 24 C 1.39360 * 120.17842 * 0.02562 * 11 10 9 25 25 C 1.38371 * 120.47012 * 359.95339 * 24 11 10 26 26 C 1.38005 * 120.28702 * 0.04477 * 25 24 11 27 27 F 1.35100 * 120.09106 * 180.25028 * 26 25 24 28 28 H 0.96999 * 119.99593 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.14099 * 0.05173 * 10 9 7 30 30 H 0.97006 * 120.00005 * 324.40734 * 12 11 10 31 31 H 1.08997 * 109.47106 * 299.99743 * 17 15 13 32 32 H 1.09003 * 109.47396 * 60.00032 * 17 15 13 33 33 H 1.08997 * 109.47521 * 300.00196 * 18 17 15 34 34 H 1.08996 * 109.47527 * 179.97438 * 18 17 15 35 35 H 1.08998 * 109.47003 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.46939 * 59.99644 * 19 18 17 37 37 H 1.09007 * 109.47251 * 299.99500 * 20 19 18 38 38 H 1.09003 * 109.47072 * 179.97438 * 20 19 18 39 39 H 0.96696 * 113.99717 * 299.99659 * 23 21 20 40 40 H 1.07999 * 119.76439 * 179.97438 * 24 11 10 41 41 H 1.08005 * 119.85427 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4966 2.6200 0.8025 6 1 3.5887 1.4120 0.5922 7 6 2.0081 -1.2118 0.0005 8 1 3.0531 -1.2322 -0.2715 9 6 1.3475 -2.4088 0.3568 10 6 0.2190 -2.3722 1.1955 11 6 -0.4184 -3.5491 1.5375 12 7 -1.5425 -3.5174 2.3716 13 6 -2.5525 -4.3876 2.1747 14 8 -2.4535 -5.2500 1.3276 15 6 -3.8050 -4.2892 3.0069 16 1 -4.2655 -3.3128 2.8563 17 6 -3.4501 -4.4632 4.4850 18 6 -4.7216 -4.3626 5.3300 19 6 -5.7022 -5.4590 4.9085 20 6 -6.0570 -5.2849 3.4304 21 6 -4.7855 -5.3855 2.5854 22 1 -4.3254 -6.3620 2.7360 23 8 -5.1171 -5.2235 1.2048 24 6 0.0543 -4.7678 1.0545 25 6 1.1637 -4.8125 0.2286 26 6 1.8152 -3.6486 -0.1253 27 9 2.8949 -3.6964 -0.9360 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1478 -1.4280 1.5701 30 1 -1.5942 -2.8690 3.0913 31 1 -2.9897 -5.4396 4.6356 32 1 -2.7519 -3.6819 4.7855 33 1 -5.1818 -3.3861 5.1794 34 1 -4.4690 -4.4870 6.3830 35 1 -6.6078 -5.3876 5.5108 36 1 -5.2420 -6.4355 5.0591 37 1 -6.5172 -4.3083 3.2797 38 1 -6.7552 -6.0662 3.1299 39 1 -5.7362 -5.8859 0.8687 40 1 -0.4489 -5.6839 1.3264 41 1 1.5213 -5.7625 -0.1404 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181092660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:59 Heat of formation + Delta-G solvation = -153.858320 kcal Electronic energy + Delta-G solvation = -25293.584232 eV Core-core repulsion = 21471.613977 eV Total energy + Delta-G solvation = -3821.970255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.20827 -41.60733 -39.72059 -38.46812 -36.54752 -35.97378 -35.06591 -32.35871 -31.69791 -30.46858 -29.60884 -27.28448 -24.85468 -23.62278 -23.47196 -22.46302 -21.34280 -20.72525 -19.37200 -18.59818 -18.20875 -17.99379 -17.48854 -16.93143 -16.48529 -16.16043 -15.96880 -15.71340 -15.24019 -15.17014 -14.84198 -14.58777 -14.45661 -14.10095 -13.95571 -13.65609 -13.52834 -13.50950 -13.18399 -12.88736 -12.75775 -12.58514 -12.32618 -12.21731 -12.05930 -11.77308 -11.66268 -11.51468 -11.23503 -11.19668 -10.87235 -10.74253 -10.42085 -9.54515 -8.82814 -8.63694 -6.46552 0.63226 0.84770 1.38346 1.45020 1.54185 1.74381 2.18902 2.22284 2.63976 3.22074 3.46030 3.55608 3.67359 4.01141 4.03234 4.14721 4.23848 4.27499 4.31766 4.34171 4.43268 4.51129 4.67977 4.84514 4.91476 4.92921 5.01232 5.01567 5.09102 5.16316 5.18940 5.21868 5.28565 5.30958 5.51070 5.61696 5.74776 5.76409 5.94526 6.12496 6.45492 6.67281 6.74175 6.81214 6.94758 7.32403 8.24131 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.003728 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.571078 B = 7509.594550 C = 8370.279435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.041 3.959 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.256 1.256 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.180 4.180 11 C 0.151 3.849 12 N -0.660 5.660 13 C 0.508 3.492 14 O -0.551 6.551 15 C -0.091 4.091 16 H 0.109 0.891 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.142 4.142 21 C 0.123 3.877 22 H 0.048 0.952 23 O -0.582 6.582 24 C -0.213 4.213 25 C -0.110 4.110 26 C -0.069 4.069 27 F -0.169 7.169 28 H 0.294 0.706 29 H 0.127 0.873 30 H 0.416 0.584 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.389 0.611 40 H 0.120 0.880 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 -4.295 13.379 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.175 4.175 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.183 1.183 7 C -0.520 4.520 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.202 4.202 11 C 0.057 3.943 12 N -0.306 5.306 13 C 0.297 3.703 14 O -0.428 6.428 15 C -0.113 4.113 16 H 0.127 0.873 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.064 3.936 22 H 0.066 0.934 23 O -0.389 6.389 24 C -0.234 4.234 25 C -0.130 4.130 26 C -0.089 4.089 27 F -0.148 7.148 28 H 0.104 0.896 29 H 0.144 0.856 30 H 0.253 0.747 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.238 0.762 40 H 0.138 0.862 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.143 -4.264 12.816 18.846 hybrid contribution 0.407 0.355 -0.570 0.785 sum -12.737 -3.910 12.246 18.096 Atomic orbital electron populations 1.69855 1.08883 1.31092 1.34201 1.26745 0.95557 1.04394 0.90810 0.85121 0.79209 0.75516 0.79462 1.19027 1.17981 1.18317 1.19673 0.98035 0.92154 1.42147 0.90837 1.17724 0.92814 0.91591 0.90892 1.20851 1.00601 0.95926 1.02853 1.17682 0.88314 0.93492 0.94811 1.43445 1.16841 1.37125 1.33176 1.21390 0.84760 0.80434 0.83716 1.90666 1.81020 1.35812 1.35306 1.21457 0.91185 1.02332 0.96288 0.87341 1.21588 0.99860 1.03426 0.89723 1.21574 0.94055 0.99879 0.99786 1.21541 1.00159 0.99286 0.94564 1.22232 0.96291 1.03471 0.95968 1.21571 0.94289 0.96380 0.81410 0.93386 1.86596 1.68731 1.57678 1.25904 1.20423 0.99287 0.96638 1.07029 1.20660 0.96454 0.96172 0.99681 1.18151 0.92183 0.95651 1.02917 1.91229 1.54079 1.97381 1.72152 0.89556 0.85581 0.74650 0.91451 0.89727 0.90793 0.89558 0.89703 0.91650 0.90972 0.90014 0.76237 0.86203 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.54 10.97 21.82 0.24 -41.30 16 2 C 0.04 2.06 5.15 85.25 0.44 2.50 16 3 Si 0.99 37.62 29.59 68.60 2.03 39.65 16 4 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.49 -27.26 8.77 23.43 0.21 -27.05 16 8 H 0.07 4.08 7.74 -2.91 -0.02 4.05 16 9 C 0.07 4.12 5.57 -21.26 -0.12 4.01 16 10 C -0.18 -9.33 8.59 22.84 0.20 -9.13 16 11 C 0.15 7.09 6.28 38.08 0.24 7.33 16 12 N -0.66 -24.41 5.25 -303.62 -1.59 -26.01 16 13 C 0.51 18.33 6.85 87.66 0.60 18.93 16 14 O -0.55 -24.60 12.74 14.38 0.18 -24.42 16 15 C -0.09 -2.25 2.28 -11.54 -0.03 -2.28 16 16 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 17 C -0.11 -1.88 5.10 30.59 0.16 -1.72 16 18 C -0.12 -1.37 5.92 30.60 0.18 -1.19 16 19 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 20 C -0.14 -2.10 5.54 30.59 0.17 -1.93 16 21 C 0.12 2.85 2.44 30.59 0.07 2.92 16 22 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 23 O -0.58 -16.44 12.22 -131.54 -1.61 -18.05 16 24 C -0.21 -10.28 8.70 22.57 0.20 -10.08 16 25 C -0.11 -5.44 10.00 22.25 0.22 -5.22 16 26 C -0.07 -3.75 7.31 22.89 0.17 -3.58 16 27 F -0.17 -9.15 16.72 44.97 0.75 -8.40 16 28 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 29 H 0.13 6.47 6.20 -2.91 -0.02 6.45 16 30 H 0.42 12.27 8.12 -92.70 -0.75 11.51 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.32 7.47 -2.39 -0.02 1.30 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.39 7.37 9.08 -74.06 -0.67 6.70 16 40 H 0.12 5.65 6.25 -2.91 -0.02 5.64 16 41 H 0.13 5.48 8.06 -2.91 -0.02 5.46 16 Total: -1.00 -71.66 337.68 2.54 -69.13 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.35 Total: 37.07 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 2.88 Total: -27.67 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.36 Total: -67.31 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.42 Total: -42.46 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 0.75 Total: -8.40 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -71.66 2.54 -69.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181092660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.733 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds