Wall clock time and date at job start Fri Apr 10 2020 21:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37758 * 120.04720 * 2 1 4 4 C 1.50697 * 119.95085 * 0.02562 * 3 2 1 5 5 C 1.38942 * 120.09425 * 179.97438 * 3 2 1 6 6 O 1.35756 * 119.90364 * 179.97438 * 5 3 2 7 7 C 1.42899 * 116.99639 * 174.78989 * 6 5 3 8 8 H 1.08994 * 109.47486 * 324.60347 * 7 6 5 9 9 C 1.50704 * 109.47262 * 84.60910 * 7 6 5 10 10 H 1.08001 * 119.99689 * 29.55488 * 9 7 6 11 11 C 1.37880 * 119.99800 * 209.55209 * 9 7 6 12 12 N 1.31511 * 119.99873 * 1.81700 * 11 9 7 13 13 Si 1.86803 * 119.99544 * 181.81653 * 11 9 7 14 14 H 1.48499 * 109.46920 * 179.97438 * 13 11 9 15 15 H 1.48491 * 109.47324 * 300.00187 * 13 11 9 16 16 H 1.48501 * 109.46995 * 60.00101 * 13 11 9 17 17 C 1.50708 * 109.46777 * 204.60436 * 7 6 5 18 18 C 1.38232 * 119.99970 * 321.00091 * 17 7 6 19 19 C 1.38243 * 119.99580 * 179.80864 * 18 17 7 20 20 C 1.38233 * 119.99871 * 0.39528 * 19 18 17 21 21 C 1.38240 * 120.00235 * 359.86101 * 20 19 18 22 22 C 1.38233 * 119.99493 * 141.27534 * 17 7 6 23 23 C 1.38983 * 120.19178 * 0.27557 * 5 3 2 24 24 C 1.37720 * 120.09107 * 359.44867 * 23 5 3 25 25 C 1.39730 * 120.04883 * 179.97438 * 2 1 3 26 26 C 1.43204 * 120.09592 * 359.97438 * 25 2 1 27 27 N 3.48501 * 80.44139 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47578 * 89.99625 * 1 2 3 29 29 H 1.09001 * 109.47200 * 210.00215 * 1 2 3 30 30 H 1.08998 * 109.47212 * 329.99596 * 1 2 3 31 31 H 1.09003 * 109.47566 * 269.97654 * 4 3 2 32 32 H 1.09003 * 109.47606 * 29.97893 * 4 3 2 33 33 H 1.09001 * 109.47080 * 149.98027 * 4 3 2 34 34 H 0.96999 * 120.00207 * 355.75698 * 12 11 9 35 35 H 1.07998 * 120.00436 * 359.97438 * 18 17 7 36 36 H 1.07999 * 119.99988 * 180.23417 * 19 18 17 37 37 H 1.08008 * 119.99770 * 179.83126 * 20 19 18 38 38 H 1.08000 * 119.99792 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.00505 * 359.97438 * 22 17 7 40 40 H 1.07997 * 119.95585 * 179.72644 * 23 5 3 41 41 H 1.08000 * 120.04659 * 180.25210 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1925 0.0000 4 6 1.4432 2.4975 0.0006 5 6 3.5862 1.1936 0.0005 6 8 4.2620 2.3710 0.0000 7 6 5.6846 2.3024 0.1162 8 1 5.9561 1.4764 0.7736 9 6 6.2898 2.0802 -1.2459 10 1 5.7901 2.4559 -2.1266 11 6 7.4814 1.3973 -1.3678 12 7 8.0716 0.9088 -0.2989 13 14 8.2573 1.1659 -3.0513 14 1 9.5246 0.4046 -2.9118 15 1 7.3227 0.4160 -3.9283 16 1 8.5417 2.4939 -3.6519 17 6 6.2044 3.5944 0.6921 18 6 5.6442 4.7979 0.3064 19 6 6.1184 5.9828 0.8377 20 6 7.1582 5.9646 1.7484 21 6 7.7219 4.7615 2.1301 22 6 7.2451 3.5764 1.6017 23 6 4.2861 -0.0071 -0.0047 24 6 3.6044 -1.2038 0.0010 25 6 2.2067 -1.2095 0.0005 26 6 1.4938 -2.4515 0.0017 27 7 0.9283 -3.4366 0.0015 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.2615 2.8127 -1.0269 32 1 0.4908 2.3670 0.5144 33 1 2.0323 3.2570 0.5147 34 1 7.7016 1.0814 0.5810 35 1 4.8344 4.8123 -0.4079 36 1 5.6783 6.9228 0.5392 37 1 7.5305 6.8906 2.1614 38 1 8.5345 4.7474 2.8413 39 1 7.6855 2.6364 1.9000 40 1 5.3660 -0.0018 -0.0087 41 1 4.1491 -2.1364 0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225513357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:31 Heat of formation + Delta-G solvation = 27.092215 kcal Electronic energy + Delta-G solvation = -24385.700586 eV Core-core repulsion = 21002.346160 eV Total energy + Delta-G solvation = -3383.354426 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.131 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.08811 -38.73093 -37.43173 -35.94279 -33.73679 -33.17634 -31.45037 -30.42693 -30.25211 -27.57549 -26.83960 -26.00694 -23.71197 -22.67594 -21.80158 -21.30155 -20.03488 -17.96832 -17.60594 -16.82466 -16.63335 -15.80882 -14.87950 -14.60904 -14.37061 -13.99568 -13.88711 -13.78335 -13.55129 -13.22820 -13.21063 -12.88066 -12.82222 -12.73027 -12.61792 -12.26587 -12.17863 -12.13879 -11.76092 -11.64544 -11.33527 -11.10729 -10.98597 -10.70429 -10.54674 -10.50866 -10.29047 -9.87505 -9.20706 -8.76882 -8.41210 -8.31473 -7.98643 -7.58318 -6.72924 -4.52753 1.21855 1.61295 1.99764 2.02243 2.90067 3.25756 3.28799 3.30348 3.48186 3.88907 4.14980 4.21950 4.25424 4.49280 4.95343 4.98335 5.06414 5.20158 5.42412 5.44937 5.48010 5.56281 5.59080 5.62876 5.83387 5.85557 5.92418 5.94115 6.00055 6.10989 6.14512 6.20353 6.30439 6.39760 6.58463 6.63172 6.66135 6.73130 6.78716 7.04982 7.06922 7.11860 7.34295 7.49148 7.64037 7.73293 7.88001 8.27932 8.41728 9.17477 10.60178 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.005000 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.267697 B = 5599.096744 C = 7021.197297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.006 4.006 3 C -0.143 4.143 4 C -0.101 4.101 5 C 0.202 3.798 6 O -0.307 6.307 7 C 0.222 3.778 8 H 0.050 0.950 9 C -0.607 4.607 10 H 0.066 0.934 11 C 0.035 3.965 12 N -0.890 5.890 13 Si 1.067 2.933 14 H -0.279 1.279 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.040 4.040 18 C -0.103 4.103 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.198 4.198 24 C -0.031 4.031 25 C -0.100 4.100 26 C 0.276 3.724 27 N -0.452 5.452 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.270 0.730 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.154 0.846 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 4.942 2.743 9.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.009 4.009 3 C -0.144 4.144 4 C -0.157 4.157 5 C 0.152 3.848 6 O -0.219 6.219 7 C 0.168 3.832 8 H 0.068 0.932 9 C -0.644 4.644 10 H 0.084 0.916 11 C -0.172 4.172 12 N -0.525 5.525 13 Si 0.893 3.107 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.040 4.040 18 C -0.122 4.122 19 C -0.147 4.147 20 C -0.162 4.162 21 C -0.141 4.141 22 C -0.133 4.133 23 C -0.217 4.217 24 C -0.052 4.052 25 C -0.104 4.104 26 C -0.038 4.038 27 N -0.128 5.128 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.172 0.828 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.830 2.922 1.956 7.681 hybrid contribution -0.531 0.991 0.636 1.292 sum -7.361 3.913 2.591 8.730 Atomic orbital electron populations 1.20916 0.90944 1.03008 1.02810 1.19321 0.95320 0.90392 0.95855 1.18866 0.90633 0.95299 1.09565 1.20599 0.99027 0.93947 1.02147 1.19033 0.90629 0.85969 0.89152 1.85931 1.23845 1.27293 1.84791 1.19355 0.74312 0.91835 0.97682 0.93223 1.22191 1.09991 1.40768 0.91464 0.91623 1.25898 0.94068 0.91973 1.05255 1.70911 1.41393 1.41047 0.99178 0.83547 0.76599 0.76920 0.73593 1.20388 1.20910 1.21006 1.20168 0.95435 0.95700 0.92718 1.20885 1.00023 0.91688 0.99556 1.21025 0.97685 0.97658 0.98302 1.20914 0.98177 0.97321 0.99837 1.20964 0.99920 0.92664 1.00545 1.20927 0.97238 0.98176 0.97003 1.21542 1.02389 0.91048 1.06674 1.20899 0.91370 0.98447 0.94480 1.15681 0.92137 0.86126 1.16465 1.25707 0.92802 0.92674 0.92585 1.81179 1.09287 1.11142 1.11239 0.90558 0.91871 0.90317 0.91591 0.91811 0.91075 0.91796 0.86364 0.87049 0.87175 0.86908 0.86373 0.82842 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.20 36.00 0.33 -1.02 16 2 C -0.01 -0.09 5.91 -104.24 -0.62 -0.71 16 3 C -0.14 -2.23 5.89 -104.54 -0.62 -2.85 16 4 C -0.10 -1.31 9.37 36.00 0.34 -0.97 16 5 C 0.20 3.75 6.57 -39.04 -0.26 3.49 16 6 O -0.31 -6.26 8.10 -18.98 -0.15 -6.41 16 7 C 0.22 4.89 1.67 -29.03 -0.05 4.84 16 8 H 0.05 1.14 4.58 -51.93 -0.24 0.90 16 9 C -0.61 -14.82 7.68 -34.44 -0.26 -15.09 16 10 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.03 0.87 5.43 -17.82 -0.10 0.77 16 12 N -0.89 -22.97 13.62 55.43 0.75 -22.21 16 13 Si 1.07 22.89 29.90 -169.99 -5.08 17.81 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 C -0.04 -0.83 4.96 -104.62 -0.52 -1.35 16 18 C -0.10 -1.98 9.36 -39.58 -0.37 -2.35 16 19 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 20 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 21 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 22 C -0.12 -2.28 9.45 -39.58 -0.37 -2.65 16 23 C -0.20 -3.69 8.68 -39.49 -0.34 -4.03 16 24 C -0.03 -0.51 9.75 -39.20 -0.38 -0.89 16 25 C -0.10 -1.53 5.74 -106.84 -0.61 -2.14 16 26 C 0.28 4.28 13.79 -22.47 -0.31 3.97 16 27 N -0.45 -7.58 18.54 41.83 0.78 -6.80 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.71 7.08 -51.93 -0.37 0.35 16 30 H 0.08 0.74 5.94 -51.93 -0.31 0.44 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.67 5.93 -51.93 -0.31 0.36 16 33 H 0.07 0.99 7.52 -51.93 -0.39 0.60 16 34 H 0.27 6.77 5.10 -40.82 -0.21 6.56 16 35 H 0.12 2.21 7.75 -52.49 -0.41 1.81 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.12 2.37 6.81 -52.49 -0.36 2.01 16 40 H 0.15 3.24 5.63 -52.49 -0.30 2.94 16 41 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -26.60 347.74 -8.42 -35.03 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.62 Total: 6.03 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -5.33 Total: -28.68 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 1.53 Total: -29.02 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.15 Total: -6.41 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.08 Total: 17.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.60 -8.42 -35.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225513357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.117 kcal (2) G-P(sol) polarization free energy of solvation -26.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds