Wall clock time and date at job start Fri Apr 10 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38006 * 119.93173 * 2 1 4 4 C 1.39420 * 119.86429 * 179.97438 * 3 2 1 5 5 C 1.48200 * 120.12731 * 179.97438 * 4 3 2 6 6 C 1.39154 * 120.28515 * 56.68350 * 5 4 3 7 7 C 1.38322 * 120.10923 * 180.02562 * 6 5 4 8 8 C 1.38042 * 120.77414 * 359.97438 * 7 6 5 9 9 C 1.39117 * 120.23173 * 359.97438 * 8 7 6 10 10 N 1.38185 * 132.74213 * 180.02562 * 9 8 7 11 11 H 0.97003 * 124.70123 * 359.95804 * 10 9 8 12 12 C 1.35599 * 110.59821 * 179.30760 * 10 9 8 13 13 C 1.38990 * 109.24486 * 0.60896 * 12 10 9 14 14 C 1.40958 * 126.93298 * 179.50429 * 13 12 10 15 15 H 1.08002 * 120.00324 * 202.30903 * 14 13 12 16 16 C 1.39689 * 119.99635 * 22.30079 * 14 13 12 17 17 N 1.31071 * 120.00400 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99846 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47389 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47347 * 120.00098 * 18 16 14 21 21 H 1.48498 * 109.47244 * 240.00031 * 18 16 14 22 22 C 1.40198 * 120.27835 * 236.40359 * 5 4 3 23 23 C 1.39450 * 119.74190 * 0.02562 * 4 3 2 24 24 C 1.37972 * 119.86802 * 359.97438 * 23 4 3 25 25 C 1.38317 * 119.93440 * 180.26907 * 2 1 3 26 26 C 1.50704 * 119.87135 * 0.02562 * 25 2 1 27 27 O 1.42898 * 109.47243 * 180.27490 * 26 25 2 28 28 H 1.08999 * 109.46629 * 90.00126 * 1 2 3 29 29 H 1.08996 * 109.46876 * 209.99961 * 1 2 3 30 30 H 1.08997 * 109.47156 * 330.00355 * 1 2 3 31 31 H 1.07993 * 120.07198 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.94581 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.61631 * 179.97438 * 7 6 5 34 34 H 1.07994 * 119.88465 * 179.97438 * 8 7 6 35 35 H 1.07996 * 125.38034 * 180.09457 * 12 10 9 36 36 H 0.96998 * 120.00494 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.06716 * 180.02562 * 23 4 3 38 38 H 1.08001 * 119.93552 * 180.02562 * 24 23 4 39 39 H 1.09001 * 109.46787 * 300.27922 * 26 25 2 40 40 H 1.08999 * 109.46612 * 60.27153 * 26 25 2 41 41 H 0.96704 * 113.99710 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.1960 0.0000 4 6 3.5899 1.1943 0.0005 5 6 4.3352 2.4753 0.0000 6 6 4.1173 3.4144 1.0034 7 6 4.8146 4.6090 0.9990 8 6 5.7325 4.8874 0.0063 9 6 5.9693 3.9647 -1.0075 10 7 6.8096 3.9716 -2.1045 11 1 7.4083 4.6986 -2.3369 12 6 6.6917 2.8154 -2.8030 13 6 5.7465 2.0029 -2.1880 14 6 5.3272 0.7242 -2.6076 15 1 4.3683 0.3399 -2.2925 16 6 6.1520 -0.0459 -3.4309 17 7 7.3159 0.4202 -3.8130 18 14 5.5961 -1.7402 -3.9875 19 1 4.2534 -2.0309 -3.4234 20 1 5.5278 -1.7765 -5.4705 21 1 6.5648 -2.7602 -3.5116 22 6 5.2702 2.7486 -1.0083 23 6 4.2802 -0.0173 0.0005 24 6 3.5809 -1.2066 0.0005 25 6 2.1973 -1.1986 -0.0056 26 6 1.4393 -2.5012 -0.0123 27 8 2.3642 -3.5905 -0.0109 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6558 2.1313 0.0004 32 1 3.4025 3.2103 1.7869 33 1 4.6389 5.3325 1.7815 34 1 6.2686 5.8249 0.0166 35 1 7.2392 2.5685 -3.7006 36 1 7.8887 -0.1147 -4.3845 37 1 5.3602 -0.0247 0.0014 38 1 4.1144 -2.1456 0.0010 39 1 0.8084 -2.5589 0.8746 40 1 0.8165 -2.5545 -0.9053 41 1 1.9453 -4.4621 -0.0153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243190839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:46 Heat of formation + Delta-G solvation = 16.780641 kcal Electronic energy + Delta-G solvation = -24744.092407 eV Core-core repulsion = 21360.290837 eV Total energy + Delta-G solvation = -3383.801570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.88523 -38.94499 -36.59902 -35.66464 -33.64918 -32.68489 -31.41382 -29.92988 -28.41844 -27.74385 -26.67970 -25.47354 -24.37581 -21.94003 -21.42860 -20.41760 -19.90654 -19.23383 -17.27551 -16.93668 -15.86625 -15.50543 -15.29674 -14.94730 -14.61390 -14.43633 -14.27751 -13.79533 -13.31684 -13.22488 -13.07646 -12.96007 -12.48235 -12.46854 -12.07602 -12.00461 -11.60525 -11.31550 -11.20435 -11.08529 -10.86005 -10.69524 -10.62224 -10.29529 -10.18430 -10.14860 -9.73193 -9.62479 -9.16083 -8.45854 -8.03480 -7.72291 -7.06572 -6.42856 -6.41730 -3.93093 1.65855 2.07163 2.33250 2.63487 3.14157 3.24998 3.34993 4.16356 4.25898 4.32670 4.34509 4.53191 4.81714 5.13861 5.25551 5.37020 5.42961 5.54180 5.55724 5.61161 5.69200 5.73686 5.82265 5.96528 6.02353 6.12476 6.17246 6.34186 6.46972 6.56863 6.64634 6.74105 6.82135 7.02692 7.14237 7.18090 7.20701 7.30523 7.39740 7.54178 7.63499 7.70522 7.74936 7.78178 8.07548 8.37499 8.71802 9.04339 9.18760 9.24443 10.59826 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.010567 B = 0.007080 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.104152 B = 3953.904704 C = 6171.016608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.110 4.110 4 C -0.019 4.019 5 C 0.003 3.997 6 C -0.171 4.171 7 C -0.117 4.117 8 C -0.149 4.149 9 C 0.084 3.916 10 N -0.592 5.592 11 H 0.394 0.606 12 C -0.077 4.077 13 C 0.025 3.975 14 C -0.419 4.419 15 H 0.079 0.921 16 C 0.062 3.938 17 N -0.838 5.838 18 Si 0.899 3.101 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.278 1.278 22 C -0.110 4.110 23 C -0.069 4.069 24 C -0.099 4.099 25 C -0.106 4.106 26 C 0.124 3.876 27 O -0.566 6.566 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.174 0.826 36 H 0.270 0.730 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 -1.252 6.447 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.019 4.019 5 C 0.002 3.998 6 C -0.192 4.192 7 C -0.137 4.137 8 C -0.171 4.171 9 C -0.026 4.026 10 N -0.193 5.193 11 H 0.227 0.773 12 C -0.201 4.201 13 C 0.020 3.980 14 C -0.452 4.452 15 H 0.097 0.903 16 C -0.148 4.148 17 N -0.469 5.469 18 Si 0.725 3.275 19 H -0.183 1.183 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.117 4.117 23 C -0.087 4.087 24 C -0.117 4.117 25 C -0.106 4.106 26 C 0.047 3.953 27 O -0.371 6.371 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.191 0.809 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.290 -0.839 6.184 10.377 hybrid contribution -0.103 -0.851 -0.571 1.030 sum -8.394 -1.690 5.613 10.238 Atomic orbital electron populations 1.20737 0.91961 1.02062 1.01887 1.19301 0.95150 0.92303 1.03031 1.20899 0.93194 0.96773 1.01953 1.18776 0.92350 0.92785 0.97978 1.18074 0.95187 0.92281 0.94234 1.20568 1.03755 0.94833 1.00010 1.20307 0.98045 0.97044 0.98262 1.19837 1.02914 0.98399 0.95934 1.18141 0.96191 0.96919 0.91397 1.41451 1.36689 1.17975 1.23190 0.77277 1.22670 1.10277 0.85376 1.01735 1.18008 0.95791 0.93577 0.90594 1.18844 1.03097 0.98370 1.24888 0.90321 1.25572 0.94300 0.99385 0.95537 1.69704 1.08999 1.37622 1.30557 0.86358 0.80098 0.82577 0.78486 1.18277 1.20625 1.20384 1.19456 0.99118 0.95685 0.97467 1.21263 1.00489 0.90962 0.95984 1.20797 0.93224 0.98210 0.99498 1.19392 0.94293 0.92570 1.04320 1.20844 0.90225 0.84959 0.99302 1.86529 1.36266 1.16616 1.97712 0.91566 0.92216 0.91788 0.86451 0.87528 0.87421 0.88138 0.80893 0.91985 0.85434 0.85701 0.92942 0.92885 0.77787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.59 36.01 0.35 -0.98 16 2 C -0.10 -1.60 5.87 -104.67 -0.61 -2.21 16 3 C -0.11 -2.01 9.28 -39.23 -0.36 -2.37 16 4 C -0.02 -0.39 4.62 -104.91 -0.48 -0.88 16 5 C 0.00 0.06 5.41 -104.73 -0.57 -0.51 16 6 C -0.17 -3.27 9.63 -39.21 -0.38 -3.65 16 7 C -0.12 -2.10 10.00 -39.62 -0.40 -2.50 16 8 C -0.15 -2.85 10.06 -39.33 -0.40 -3.24 16 9 C 0.08 1.88 7.23 -83.91 -0.61 1.27 16 10 N -0.59 -12.80 5.99 -9.81 -0.06 -12.86 16 11 H 0.39 6.96 8.96 -40.82 -0.37 6.60 16 12 C -0.08 -1.93 10.77 -15.61 -0.17 -2.10 16 13 C 0.03 0.68 5.96 -104.83 -0.62 0.05 16 14 C -0.42 -11.26 7.52 -38.01 -0.29 -11.55 16 15 H 0.08 2.13 5.59 -52.49 -0.29 1.83 16 16 C 0.06 1.62 5.47 -17.33 -0.09 1.53 16 17 N -0.84 -22.23 10.83 55.54 0.60 -21.63 16 18 Si 0.90 20.42 29.56 -169.99 -5.02 15.39 16 19 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 C -0.11 -2.69 6.07 -104.64 -0.64 -3.32 16 23 C -0.07 -1.46 6.69 -39.23 -0.26 -1.73 16 24 C -0.10 -1.94 9.36 -39.63 -0.37 -2.31 16 25 C -0.11 -1.82 5.88 -104.54 -0.62 -2.43 16 26 C 0.12 1.65 6.16 36.01 0.22 1.87 16 27 O -0.57 -7.69 12.12 -35.23 -0.43 -8.12 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.61 6.62 -51.93 -0.34 0.26 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.17 4.48 6.40 -52.49 -0.34 4.14 16 36 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.13 2.90 7.80 -52.49 -0.41 2.49 16 38 H 0.13 2.41 6.99 -52.49 -0.37 2.04 16 39 H 0.05 0.58 7.47 -51.93 -0.39 0.19 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.38 2.99 9.12 45.56 0.42 3.40 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -30.77 339.23 -10.27 -41.04 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -4.18 Total: 16.10 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -6.30 Total: -35.04 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.54 Total: -34.49 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.43 Total: -8.12 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.77 -10.27 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243190839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.821 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds