Wall clock time and date at job start Fri Apr 10 2020 21:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47223 * 273.66070 * 3 2 1 5 5 H 1.48505 * 109.46897 * 33.65866 * 3 2 1 6 6 H 1.48500 * 109.47274 * 153.65610 * 3 2 1 7 7 C 1.39920 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99890 * 340.38696 * 7 2 1 9 9 C 1.41295 * 120.00295 * 160.38455 * 7 2 1 10 10 C 1.40638 * 120.22858 * 332.05124 * 9 7 2 11 11 C 1.38143 * 119.70998 * 179.97438 * 10 9 7 12 12 N 1.40014 * 119.90787 * 179.97438 * 11 10 9 13 13 C 1.34769 * 119.99831 * 144.76115 * 12 11 10 14 14 O 1.21289 * 120.00296 * 4.87625 * 13 12 11 15 15 C 1.50698 * 120.00191 * 184.88186 * 13 12 11 16 16 N 1.46907 * 109.53550 * 35.34780 * 15 13 12 17 17 C 1.53124 * 109.50302 * 275.25217 * 15 13 12 18 18 C 1.53095 * 109.15307 * 297.71125 * 17 15 13 19 19 C 1.53034 * 109.29072 * 302.33720 * 18 17 15 20 20 N 1.46851 * 109.51665 * 59.18373 * 19 18 17 21 21 C 1.46847 * 111.19907 * 298.26835 * 20 19 18 22 22 C 1.39366 * 120.17870 * 0.25683 * 11 10 9 23 23 C 1.38364 * 120.46692 * 359.48375 * 22 11 10 24 24 C 1.38005 * 120.28862 * 0.51139 * 23 22 11 25 25 F 1.35103 * 120.09166 * 179.71795 * 24 23 22 26 26 H 0.96997 * 120.00047 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.14512 * 359.95598 * 10 9 7 28 28 H 0.97003 * 119.99829 * 324.75153 * 12 11 10 29 29 H 1.00894 * 110.99925 * 60.09979 * 16 15 13 30 30 H 1.00900 * 111.00094 * 184.05496 * 16 15 13 31 31 H 1.09002 * 109.52206 * 57.61237 * 17 15 13 32 32 H 1.09005 * 109.52140 * 177.73923 * 17 15 13 33 33 H 1.08994 * 109.48711 * 182.40031 * 18 17 15 34 34 H 1.08998 * 109.50786 * 62.28391 * 18 17 15 35 35 H 1.09001 * 109.46630 * 299.17529 * 19 18 17 36 36 H 1.08998 * 109.46624 * 179.19703 * 19 18 17 37 37 H 1.00895 * 111.00584 * 174.16626 * 20 19 18 38 38 H 1.09000 * 109.46116 * 181.75537 * 21 20 19 39 39 H 1.09005 * 109.45730 * 301.73533 * 21 20 19 40 40 H 1.08001 * 119.76410 * 179.72065 * 22 11 10 41 41 H 1.08005 * 119.85246 * 180.23779 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4126 2.0911 -1.3972 5 1 1.4807 2.6291 0.7760 6 1 3.5766 1.4191 0.6213 7 6 2.0082 -1.2117 -0.0005 8 1 1.5152 -2.1200 0.3130 9 6 3.3596 -1.2470 -0.4113 10 6 3.8443 -0.3022 -1.3334 11 6 5.1677 -0.3463 -1.7272 12 7 5.6545 0.5920 -2.6454 13 6 6.9163 1.0520 -2.5339 14 8 7.6585 0.5891 -1.6936 15 6 7.4052 2.1416 -3.4530 16 7 6.3072 3.0761 -3.7345 17 6 7.8978 1.5219 -4.7637 18 6 9.0804 0.5958 -4.4682 19 6 10.1851 1.3931 -3.7712 20 7 9.6643 1.9648 -2.5228 21 6 8.5582 2.8943 -2.7852 22 6 6.0180 -1.3258 -1.2176 23 6 5.5503 -2.2558 -0.3060 24 6 4.2319 -2.2295 0.1008 25 9 3.7780 -3.1429 0.9867 26 1 -0.4850 0.8400 -0.0004 27 1 3.1847 0.4544 -1.7321 28 1 5.0835 0.9108 -3.3619 29 1 5.9670 3.5007 -2.8848 30 1 6.5919 3.7784 -4.4008 31 1 7.0915 0.9485 -5.2212 32 1 8.2140 2.3126 -5.4442 33 1 9.4626 0.1847 -5.4025 34 1 8.7533 -0.2166 -3.8193 35 1 10.5214 2.1969 -4.4261 36 1 11.0230 0.7331 -3.5466 37 1 10.3985 2.4156 -1.9975 38 1 8.2146 3.3247 -1.8446 39 1 8.9021 3.6909 -3.4451 40 1 7.0503 -1.3569 -1.5336 41 1 6.2190 -3.0082 0.0855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219518171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:40 Heat of formation + Delta-G solvation = -51.754840 kcal Electronic energy + Delta-G solvation = -25987.890971 eV Core-core repulsion = 22202.641006 eV Total energy + Delta-G solvation = -3785.249965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.28663 -40.59367 -38.34827 -36.76419 -34.59272 -34.02474 -33.16943 -31.95517 -30.51334 -28.51304 -28.09910 -25.20224 -24.06167 -23.71109 -21.91028 -21.65038 -20.22215 -19.10516 -17.54377 -17.06516 -16.85754 -16.32748 -15.86321 -15.61581 -15.13232 -14.89048 -14.54905 -14.40224 -14.22213 -14.06680 -13.81075 -13.48586 -13.25427 -12.93343 -12.75396 -12.67752 -12.36642 -12.10575 -11.86353 -11.69545 -11.31666 -11.18094 -10.97995 -10.83863 -10.81537 -10.56181 -10.18057 -9.81289 -9.33680 -9.19069 -9.14578 -8.95313 -8.34501 -7.76709 -7.03179 -6.99746 -4.52615 2.28536 2.55038 3.01478 3.08761 3.21039 3.30393 3.56416 3.93616 3.95102 4.20662 4.42415 4.54119 4.64317 4.81738 4.92410 5.03636 5.25689 5.28548 5.32967 5.45295 5.48275 5.61729 5.74413 5.80074 5.94530 5.96420 6.16574 6.40531 6.49266 6.59203 6.65044 6.72507 6.92937 7.03895 7.07702 7.24621 7.36602 7.47005 7.58671 7.59953 7.95832 8.16320 8.30569 8.53186 8.70105 8.77839 9.99810 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.004762 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.140977 B = 5878.586838 C = 6857.514318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.438 4.438 8 H 0.096 0.904 9 C 0.081 3.919 10 C -0.249 4.249 11 C 0.172 3.828 12 N -0.663 5.663 13 C 0.518 3.482 14 O -0.485 6.485 15 C 0.103 3.897 16 N -0.834 5.834 17 C -0.103 4.103 18 C -0.123 4.123 19 C 0.062 3.938 20 N -0.662 5.662 21 C 0.050 3.950 22 C -0.212 4.212 23 C -0.101 4.101 24 C -0.021 4.021 25 F -0.158 7.158 26 H 0.287 0.713 27 H 0.112 0.888 28 H 0.408 0.592 29 H 0.349 0.651 30 H 0.346 0.654 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.075 0.925 37 H 0.341 0.659 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.122 0.878 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.759 9.079 -10.247 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.466 4.466 8 H 0.114 0.886 9 C 0.076 3.924 10 C -0.271 4.271 11 C 0.079 3.921 12 N -0.309 5.309 13 C 0.302 3.698 14 O -0.356 6.356 15 C 0.007 3.993 16 N -0.366 5.366 17 C -0.141 4.141 18 C -0.161 4.161 19 C -0.068 4.068 20 N -0.293 5.293 21 C -0.082 4.082 22 C -0.233 4.233 23 C -0.121 4.121 24 C -0.041 4.041 25 F -0.137 7.137 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.244 0.756 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.139 0.861 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.214 7.659 -9.733 18.852 hybrid contribution 0.839 2.391 -0.210 2.543 sum 15.053 10.050 -9.943 20.651 Atomic orbital electron populations 1.69707 1.08117 1.30442 1.33996 1.26152 0.94715 1.01705 0.90788 0.86307 0.81231 0.79596 0.78967 1.19347 1.21805 1.16813 1.19383 0.93248 0.96693 1.37247 0.88605 1.17424 0.93018 0.90756 0.91157 1.20587 0.94719 1.06012 1.05744 1.17495 0.92915 0.89352 0.92339 1.43530 1.14154 1.42305 1.30882 1.20018 0.81817 0.83537 0.84386 1.90768 1.53872 1.57100 1.33866 1.21139 0.90021 0.92559 0.95625 1.58888 1.35550 1.24201 1.17976 1.21544 0.98692 0.99442 0.94441 1.21636 0.95089 0.98954 1.00434 1.21899 0.97082 0.97498 0.90303 1.60070 1.11648 1.37560 1.19996 1.22492 0.92838 0.93050 0.99838 1.20304 0.99733 0.97812 1.05462 1.20511 0.93556 0.99342 0.98697 1.17775 0.92550 0.95765 0.98017 1.91301 1.89953 1.65391 1.67076 0.90267 0.87083 0.75605 0.83688 0.83994 0.90417 0.91414 0.91185 0.90149 0.95910 0.90661 0.84121 0.90686 0.95095 0.86062 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.17 13.93 55.55 0.77 -20.39 16 2 C 0.09 2.27 5.39 -17.34 -0.09 2.17 16 3 Si 0.91 20.71 24.53 -169.99 -4.17 16.54 16 4 H -0.27 -5.69 6.59 56.52 0.37 -5.32 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.24 -5.88 6.96 56.52 0.39 -5.48 16 7 C -0.44 -12.13 9.27 -37.79 -0.35 -12.48 16 8 H 0.10 2.83 7.94 -52.49 -0.42 2.41 16 9 C 0.08 2.11 5.15 -106.78 -0.55 1.56 16 10 C -0.25 -5.94 7.16 -38.71 -0.28 -6.22 16 11 C 0.17 3.75 6.28 -83.73 -0.53 3.23 16 12 N -0.66 -11.77 5.20 -9.90 -0.05 -11.82 16 13 C 0.52 8.55 5.58 -10.99 -0.06 8.49 16 14 O -0.49 -9.52 11.89 5.55 0.07 -9.45 16 15 C 0.10 1.20 0.90 -132.67 -0.12 1.08 16 16 N -0.83 -8.05 8.19 -0.12 0.00 -8.05 16 17 C -0.10 -1.05 5.04 -26.62 -0.13 -1.18 16 18 C -0.12 -1.31 5.78 -26.66 -0.15 -1.46 16 19 C 0.06 0.61 6.55 -3.83 -0.03 0.58 16 20 N -0.66 -7.63 5.23 -113.82 -0.59 -8.23 16 21 C 0.05 0.54 5.35 -3.84 -0.02 0.52 16 22 C -0.21 -4.71 8.70 -39.12 -0.34 -5.05 16 23 C -0.10 -2.31 10.00 -39.62 -0.40 -2.70 16 24 C -0.02 -0.52 7.31 -38.62 -0.28 -0.80 16 25 F -0.16 -4.02 16.75 2.25 0.04 -3.99 16 26 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 27 H 0.11 2.59 4.53 -52.49 -0.24 2.35 16 28 H 0.41 6.44 8.28 -40.82 -0.34 6.10 16 29 H 0.35 3.47 8.99 -39.29 -0.35 3.12 16 30 H 0.35 2.44 8.98 -39.29 -0.35 2.09 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.11 7.00 -51.93 -0.36 0.75 16 35 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.34 3.32 8.90 -39.29 -0.35 2.97 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.12 2.64 6.23 -52.49 -0.33 2.31 16 41 H 0.11 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -30.41 329.01 -7.60 -38.01 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -5.29 Total: 14.68 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.33 Total: -12.26 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.13 Total: -48.49 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.45 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.17 Total: 16.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.41 -7.60 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.746 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds