Wall clock time and date at job start Fri Apr 10 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47223 * 273.66070 * 3 2 1 5 5 H 1.48505 * 109.46897 * 33.65866 * 3 2 1 6 6 H 1.48500 * 109.47274 * 153.65610 * 3 2 1 7 7 C 1.39920 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99890 * 340.38696 * 7 2 1 9 9 C 1.41295 * 120.00295 * 160.38455 * 7 2 1 10 10 C 1.40638 * 120.22858 * 332.05124 * 9 7 2 11 11 C 1.38143 * 119.70998 * 179.97438 * 10 9 7 12 12 N 1.40014 * 119.90787 * 179.97438 * 11 10 9 13 13 C 1.34769 * 119.99831 * 144.76115 * 12 11 10 14 14 O 1.21289 * 120.00296 * 4.87625 * 13 12 11 15 15 C 1.50698 * 120.00191 * 184.88186 * 13 12 11 16 16 N 1.46907 * 109.53550 * 35.34780 * 15 13 12 17 17 C 1.53124 * 109.50302 * 275.25217 * 15 13 12 18 18 C 1.53095 * 109.15307 * 297.71125 * 17 15 13 19 19 C 1.53034 * 109.29072 * 302.33720 * 18 17 15 20 20 N 1.46851 * 109.51665 * 59.18373 * 19 18 17 21 21 C 1.46847 * 111.19907 * 298.26835 * 20 19 18 22 22 C 1.39366 * 120.17870 * 0.25683 * 11 10 9 23 23 C 1.38364 * 120.46692 * 359.48375 * 22 11 10 24 24 C 1.38005 * 120.28862 * 0.51139 * 23 22 11 25 25 F 1.35103 * 120.09166 * 179.71795 * 24 23 22 26 26 H 0.96997 * 120.00047 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.14512 * 359.95598 * 10 9 7 28 28 H 0.97003 * 119.99829 * 324.75153 * 12 11 10 29 29 H 1.00894 * 110.99925 * 60.09979 * 16 15 13 30 30 H 1.00900 * 111.00094 * 184.05496 * 16 15 13 31 31 H 1.09002 * 109.52206 * 57.61237 * 17 15 13 32 32 H 1.09005 * 109.52140 * 177.73923 * 17 15 13 33 33 H 1.08994 * 109.48711 * 182.40031 * 18 17 15 34 34 H 1.08998 * 109.50786 * 62.28391 * 18 17 15 35 35 H 1.09001 * 109.46630 * 299.17529 * 19 18 17 36 36 H 1.08998 * 109.46624 * 179.19703 * 19 18 17 37 37 H 1.00895 * 111.00584 * 174.16626 * 20 19 18 38 38 H 1.09000 * 109.46116 * 181.75537 * 21 20 19 39 39 H 1.09005 * 109.45730 * 301.73533 * 21 20 19 40 40 H 1.08001 * 119.76410 * 179.72065 * 22 11 10 41 41 H 1.08005 * 119.85246 * 180.23779 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4126 2.0911 -1.3972 5 1 1.4807 2.6291 0.7760 6 1 3.5766 1.4191 0.6213 7 6 2.0082 -1.2117 -0.0005 8 1 1.5152 -2.1200 0.3130 9 6 3.3596 -1.2470 -0.4113 10 6 3.8443 -0.3022 -1.3334 11 6 5.1677 -0.3463 -1.7272 12 7 5.6545 0.5920 -2.6454 13 6 6.9163 1.0520 -2.5339 14 8 7.6585 0.5891 -1.6936 15 6 7.4052 2.1416 -3.4530 16 7 6.3072 3.0761 -3.7345 17 6 7.8978 1.5219 -4.7637 18 6 9.0804 0.5958 -4.4682 19 6 10.1851 1.3931 -3.7712 20 7 9.6643 1.9648 -2.5228 21 6 8.5582 2.8943 -2.7852 22 6 6.0180 -1.3258 -1.2176 23 6 5.5503 -2.2558 -0.3060 24 6 4.2319 -2.2295 0.1008 25 9 3.7780 -3.1429 0.9867 26 1 -0.4850 0.8400 -0.0004 27 1 3.1847 0.4544 -1.7321 28 1 5.0835 0.9108 -3.3619 29 1 5.9670 3.5007 -2.8848 30 1 6.5919 3.7784 -4.4008 31 1 7.0915 0.9485 -5.2212 32 1 8.2140 2.3126 -5.4442 33 1 9.4626 0.1847 -5.4025 34 1 8.7533 -0.2166 -3.8193 35 1 10.5214 2.1969 -4.4261 36 1 11.0230 0.7331 -3.5466 37 1 10.3985 2.4156 -1.9975 38 1 8.2146 3.3247 -1.8446 39 1 8.9021 3.6909 -3.4451 40 1 7.0503 -1.3569 -1.5336 41 1 6.2190 -3.0082 0.0855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219518171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:54:38 Heat of formation + Delta-G solvation = -75.713190 kcal Electronic energy + Delta-G solvation = -25988.929883 eV Core-core repulsion = 22202.641006 eV Total energy + Delta-G solvation = -3786.288877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.144 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -49.27549 -41.79137 -39.78958 -38.21434 -35.96955 -35.48289 -34.69894 -32.74896 -32.45034 -30.00321 -29.13141 -27.16827 -24.97979 -24.79015 -23.77969 -22.72857 -21.74390 -20.44711 -19.38726 -18.44918 -18.06376 -17.76551 -17.39744 -16.88586 -16.61178 -16.37962 -16.05392 -15.77411 -15.51714 -15.23983 -15.08717 -14.72065 -14.63120 -14.46111 -14.06706 -13.86381 -13.82466 -13.52142 -13.42227 -13.27008 -13.09060 -12.70326 -12.42713 -12.08735 -12.00704 -11.73258 -11.71248 -11.61830 -11.04040 -10.83487 -10.50482 -9.92465 -9.68655 -9.13115 -8.99097 -8.79659 -6.59162 0.47664 0.65333 1.22006 1.35442 1.46773 1.76378 2.08376 2.21445 2.53514 3.17380 3.28299 3.39272 3.65490 3.80713 3.88268 3.89206 4.13000 4.14862 4.25521 4.49344 4.53711 4.55927 4.61977 4.68291 4.72782 4.83748 4.85619 4.94744 5.00575 5.18858 5.20234 5.33924 5.52975 5.62896 5.66129 5.77171 5.85846 6.03642 6.18082 6.25006 6.45586 6.52893 6.58139 6.66827 6.73295 7.40080 8.09390 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.004762 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.140977 B = 5878.586838 C = 6857.514318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.054 3.946 3 Si 0.967 3.033 4 H -0.238 1.238 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.477 4.477 8 H 0.055 0.945 9 C 0.066 3.934 10 C -0.251 4.251 11 C 0.181 3.819 12 N -0.660 5.660 13 C 0.515 3.485 14 O -0.517 6.517 15 C 0.114 3.886 16 N -0.833 5.833 17 C -0.100 4.100 18 C -0.124 4.124 19 C 0.063 3.937 20 N -0.688 5.688 21 C 0.052 3.948 22 C -0.205 4.205 23 C -0.094 4.094 24 C -0.054 4.054 25 F -0.167 7.167 26 H 0.299 0.701 27 H 0.119 0.881 28 H 0.419 0.581 29 H 0.350 0.650 30 H 0.366 0.634 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.348 0.652 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.098 11.874 -12.564 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.163 4.163 3 Si 0.789 3.211 4 H -0.162 1.162 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.506 4.506 8 H 0.074 0.926 9 C 0.062 3.938 10 C -0.272 4.272 11 C 0.087 3.913 12 N -0.306 5.306 13 C 0.301 3.699 14 O -0.389 6.389 15 C 0.018 3.982 16 N -0.367 5.367 17 C -0.138 4.138 18 C -0.162 4.162 19 C -0.066 4.066 20 N -0.321 5.321 21 C -0.080 4.080 22 C -0.226 4.226 23 C -0.113 4.113 24 C -0.074 4.074 25 F -0.146 7.146 26 H 0.110 0.890 27 H 0.137 0.863 28 H 0.257 0.743 29 H 0.163 0.837 30 H 0.182 0.818 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.167 0.833 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.552 10.480 -12.097 23.024 hybrid contribution 0.268 1.443 0.469 1.541 sum 16.820 11.923 -11.628 23.670 Atomic orbital electron populations 1.69713 1.09160 1.31993 1.34957 1.26820 0.95365 1.04060 0.90024 0.85496 0.78835 0.76211 0.80521 1.16225 1.19941 1.19108 1.19305 0.94554 0.96301 1.40442 0.92636 1.17602 0.92612 0.91860 0.91697 1.20650 0.95725 1.05607 1.05254 1.17559 0.92104 0.89550 0.92130 1.43594 1.15089 1.41562 1.30366 1.20992 0.80599 0.83906 0.84382 1.90747 1.54471 1.58318 1.35412 1.21018 0.90602 0.91425 0.95204 1.58828 1.34701 1.24707 1.18438 1.21578 0.98272 1.00101 0.93858 1.21644 0.95749 0.98145 1.00681 1.21910 0.96656 0.98002 0.90036 1.60040 1.12403 1.38379 1.21252 1.22485 0.92287 0.93409 0.99856 1.20549 1.00130 0.97271 1.04678 1.20789 0.92769 0.99721 0.98059 1.18088 0.93686 0.96418 0.99222 1.91264 1.90207 1.65691 1.67483 0.89017 0.86339 0.74258 0.83686 0.81807 0.90914 0.88328 0.89170 0.93932 0.93575 0.90674 0.83302 0.91920 0.92057 0.85121 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.19 13.93 21.82 0.30 -44.88 16 2 C 0.05 2.90 5.39 85.25 0.46 3.36 16 3 Si 0.97 42.17 24.53 68.60 1.68 43.85 16 4 H -0.24 -9.18 6.59 99.48 0.66 -8.52 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -12.51 6.96 99.48 0.69 -11.82 16 7 C -0.48 -27.79 9.27 23.43 0.22 -27.57 16 8 H 0.06 3.55 7.94 -2.91 -0.02 3.52 16 9 C 0.07 3.55 5.15 -21.26 -0.11 3.44 16 10 C -0.25 -11.83 7.16 22.83 0.16 -11.67 16 11 C 0.18 7.67 6.28 38.08 0.24 7.91 16 12 N -0.66 -21.95 5.20 -303.61 -1.58 -23.53 16 13 C 0.51 15.83 5.58 87.66 0.49 16.32 16 14 O -0.52 -19.48 11.89 -3.06 -0.04 -19.52 16 15 C 0.11 2.27 0.90 2.83 0.00 2.27 16 16 N -0.83 -12.77 8.19 -154.30 -1.26 -14.04 16 17 C -0.10 -1.65 5.04 30.67 0.15 -1.49 16 18 C -0.12 -2.29 5.78 30.64 0.18 -2.11 16 19 C 0.06 1.04 6.55 86.32 0.57 1.61 16 20 N -0.69 -14.10 5.23 -514.00 -2.69 -16.79 16 21 C 0.05 0.94 5.35 86.32 0.46 1.40 16 22 C -0.21 -8.89 8.70 22.57 0.20 -8.70 16 23 C -0.09 -4.24 10.00 22.24 0.22 -4.01 16 24 C -0.05 -2.79 7.31 22.89 0.17 -2.62 16 25 F -0.17 -8.88 16.75 44.97 0.75 -8.12 16 26 H 0.30 14.31 8.30 -92.71 -0.77 13.54 16 27 H 0.12 5.35 4.53 -2.91 -0.01 5.34 16 28 H 0.42 12.07 8.28 -92.71 -0.77 11.30 16 29 H 0.35 5.67 8.99 -89.70 -0.81 4.86 16 30 H 0.37 3.39 8.98 -89.69 -0.81 2.59 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 1.11 7.00 -2.39 -0.02 1.10 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.35 5.99 8.90 -89.70 -0.80 5.20 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.13 5.49 6.23 -2.91 -0.02 5.47 16 41 H 0.13 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -68.53 329.01 -1.54 -70.07 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -2.12 Total: 34.81 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 3.41 Total: -21.85 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -5.22 Total: -99.24 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.75 Total: -8.12 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.68 Total: 43.85 kcal Total: -68.53 -1.54 -70.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.647 kcal (2) G-P(sol) polarization free energy of solvation -68.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds