Wall clock time and date at job start Fri Apr 10 2020 21:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47225 * 2 1 4 4 C 1.53002 * 109.47297 * 239.99524 * 2 1 3 5 5 C 1.52990 * 109.47085 * 174.81267 * 4 2 1 6 6 C 1.50707 * 109.47142 * 175.24328 * 5 4 2 7 7 H 1.07995 * 119.99649 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00006 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46998 * 89.99973 * 10 8 6 12 12 H 1.48497 * 109.47075 * 210.00127 * 10 8 6 13 13 H 1.48500 * 109.46738 * 330.00257 * 10 8 6 14 14 N 1.46902 * 109.47141 * 119.99480 * 2 1 3 15 15 C 1.48569 * 110.99887 * 62.23889 * 14 2 1 16 16 C 1.54383 * 104.59310 * 200.96183 * 15 14 2 17 17 C 1.54257 * 105.05948 * 23.85142 * 16 15 14 18 18 H 1.09007 * 110.31851 * 241.10099 * 17 16 15 19 19 C 1.50702 * 110.32437 * 119.00402 * 17 16 15 20 20 C 1.38263 * 119.98900 * 302.54671 * 19 17 16 21 21 C 1.38219 * 120.02795 * 179.76688 * 20 19 17 22 22 C 1.38239 * 120.00999 * 0.51440 * 21 20 19 23 23 C 1.38331 * 119.98607 * 359.73372 * 22 21 20 24 24 Cl 1.73604 * 120.01313 * 179.97438 * 23 22 21 25 25 C 1.38188 * 119.99677 * 122.82380 * 19 17 16 26 26 C 1.48553 * 111.00254 * 306.82152 * 14 2 1 27 27 H 1.09000 * 109.46840 * 66.52442 * 1 2 3 28 28 H 1.09000 * 109.47196 * 186.52180 * 1 2 3 29 29 H 1.08997 * 109.47201 * 306.51925 * 1 2 3 30 30 H 1.08997 * 109.47152 * 294.81443 * 4 2 1 31 31 H 1.09003 * 109.46959 * 54.80865 * 4 2 1 32 32 H 1.09002 * 109.47274 * 295.23734 * 5 4 2 33 33 H 1.08999 * 109.47515 * 55.24728 * 5 4 2 34 34 H 0.97006 * 119.99984 * 180.02562 * 9 8 6 35 35 H 1.09000 * 110.41406 * 82.17776 * 15 14 2 36 36 H 1.09008 * 110.50743 * 319.78977 * 15 14 2 37 37 H 1.08997 * 110.32087 * 264.94812 * 16 15 14 38 38 H 1.08998 * 110.40902 * 142.79090 * 16 15 14 39 39 H 1.08003 * 119.98932 * 359.97438 * 20 19 17 40 40 H 1.07999 * 119.99603 * 180.23035 * 21 20 19 41 41 H 1.07998 * 120.00546 * 179.72816 * 22 21 20 42 42 H 1.08001 * 120.00869 * 359.97438 * 25 19 17 43 43 H 1.09002 * 110.41525 * 40.25333 * 26 14 2 44 44 H 1.09006 * 110.41007 * 277.81740 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5644 -0.6094 -1.3161 6 6 4.0769 -1.4172 -2.4806 7 1 3.3845 -1.9568 -3.1097 8 6 5.4295 -1.4673 -2.7428 9 7 6.2727 -0.8106 -1.9763 10 14 6.0647 -2.4692 -4.1858 11 1 6.1136 -1.6139 -5.3988 12 1 7.4283 -2.9704 -3.8782 13 1 5.1572 -3.6195 -4.4273 14 7 2.0197 -0.6924 1.1995 15 6 1.5881 -2.1140 1.2072 16 6 1.6829 -2.5413 2.6876 17 6 1.5680 -1.2298 3.4915 18 1 2.4705 -1.0668 4.0808 19 6 0.3582 -1.2702 4.3891 20 6 -0.8973 -1.4767 3.8479 21 6 -2.0069 -1.5188 4.6710 22 6 -1.8633 -1.3438 6.0347 23 6 -0.6080 -1.1321 6.5761 24 17 -0.4269 -0.9116 8.2886 25 6 0.5030 -1.0953 5.7522 26 6 1.4135 -0.1204 2.4292 27 1 -0.3633 0.4094 -0.9426 28 1 -0.3633 -1.0210 0.1167 29 1 -0.3633 0.6115 0.8259 30 1 1.7546 -1.7723 -1.2039 31 1 1.6028 -0.2641 -2.1368 32 1 3.8466 0.4354 -1.4465 33 1 3.9977 -0.9901 -0.3912 34 1 7.2243 -0.8455 -2.1610 35 1 2.2568 -2.7177 0.5936 36 1 0.5618 -2.2034 0.8506 37 1 2.6415 -3.0220 2.8822 38 1 0.8641 -3.2143 2.9422 39 1 -1.0106 -1.6085 2.7820 40 1 -2.9869 -1.6838 4.2481 41 1 -2.7309 -1.3723 6.6772 42 1 1.4833 -0.9300 6.1744 43 1 0.3597 0.1042 2.2646 44 1 1.9509 0.7771 2.7359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:44 Heat of formation + Delta-G solvation = -6.564372 kcal Electronic energy + Delta-G solvation = -22860.605549 eV Core-core repulsion = 19609.191909 eV Total energy + Delta-G solvation = -3251.413641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22759 -39.69418 -37.48887 -36.33400 -34.84776 -32.65250 -31.71382 -31.37051 -29.61657 -28.78027 -27.04205 -24.35916 -23.62874 -23.40334 -22.72368 -20.92843 -20.13381 -18.40451 -18.05416 -17.02480 -16.98591 -16.51006 -16.29853 -15.99166 -15.17990 -14.98110 -14.75288 -14.54513 -14.48156 -14.33250 -14.25862 -13.60961 -13.25427 -13.12883 -12.92444 -12.81610 -12.72883 -12.63577 -12.44134 -12.37831 -12.16989 -12.10558 -11.99354 -11.82708 -11.73001 -11.44924 -11.24903 -11.23146 -10.88576 -10.48774 -9.84577 -9.61114 -9.09276 -8.13559 -6.24203 0.18453 0.31141 1.15678 1.39753 1.41281 1.52048 2.43469 2.63787 3.12391 3.18956 3.68326 3.72247 3.83135 3.95570 4.10463 4.14891 4.19502 4.29018 4.32065 4.39521 4.46012 4.47983 4.59488 4.70040 4.75669 4.80231 4.91311 4.93272 4.96628 4.98362 5.11483 5.16484 5.18780 5.23762 5.27418 5.36444 5.39711 5.46672 5.59518 5.61266 5.85389 5.88383 6.01506 6.11438 6.30345 6.34113 6.95755 7.44025 8.97793 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.028642 B = 0.002622 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.355679 B =10675.011747 C =11106.601473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.074 3.926 3 H 0.063 0.937 4 C -0.092 4.092 5 C 0.037 3.963 6 C -0.540 4.540 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.263 1.263 14 N -0.518 5.518 15 C 0.031 3.969 16 C -0.108 4.108 17 C -0.048 4.048 18 H 0.084 0.916 19 C -0.059 4.059 20 C -0.114 4.114 21 C -0.101 4.101 22 C -0.119 4.119 23 C -0.043 4.043 24 Cl -0.076 7.076 25 C -0.117 4.117 26 C 0.036 3.964 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.051 0.949 32 H -0.024 1.024 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.529 -1.527 17.309 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.034 4.034 3 H 0.082 0.918 4 C -0.129 4.129 5 C 0.000 4.000 6 C -0.578 4.578 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.188 1.188 14 N -0.242 5.242 15 C -0.096 4.096 16 C -0.146 4.146 17 C -0.067 4.067 18 H 0.102 0.898 19 C -0.060 4.060 20 C -0.132 4.132 21 C -0.119 4.119 22 C -0.138 4.138 23 C -0.069 4.069 24 Cl -0.048 7.048 25 C -0.136 4.136 26 C -0.091 4.091 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.069 0.931 32 H -0.006 1.006 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.174 0.826 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.741 -1.411 17.467 25.658 hybrid contribution 0.291 -0.229 -0.642 0.741 sum -18.450 -1.640 16.825 25.024 Atomic orbital electron populations 1.22407 0.95614 1.02594 1.02877 1.21770 0.93680 0.97657 0.90337 0.91826 1.21537 0.96689 0.99174 0.95531 1.18837 0.92022 0.93862 0.95243 1.21774 0.92461 1.29943 1.13653 0.92627 1.25954 0.97514 0.96984 0.99445 1.70130 1.02783 1.44045 1.40381 0.85525 0.77591 0.79110 0.79276 1.19880 1.20887 1.18758 1.65554 1.54341 1.02595 1.01720 1.23111 0.99330 0.90081 0.97095 1.22358 1.02733 0.96398 0.93112 1.20808 0.95653 0.95324 0.94884 0.89788 1.19749 0.94900 0.98603 0.92759 1.21288 0.91822 0.99180 1.00929 1.21395 0.99944 0.98218 0.92352 1.21308 0.95924 1.00312 0.96250 1.21047 0.95676 1.05440 0.84782 1.98369 1.98036 1.95638 1.12724 1.21067 0.98472 1.01244 0.92812 1.23317 0.99128 0.97284 0.89417 0.91539 0.91543 0.91129 0.92986 0.93070 1.00559 0.97714 0.93041 0.92474 0.92057 0.91581 0.89579 0.84876 0.82554 0.83418 0.84816 0.91367 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 8.35 71.98 0.60 -3.66 16 2 C 0.07 2.47 2.55 44.92 0.11 2.58 16 3 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.09 -3.77 4.43 30.59 0.14 -3.63 16 5 C 0.04 2.03 4.92 29.85 0.15 2.18 16 6 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 7 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 9 N -0.93 -58.58 13.29 21.45 0.28 -58.29 16 10 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 14 N -0.52 -16.84 4.84 -856.31 -4.14 -20.98 16 15 C 0.03 0.91 5.10 86.45 0.44 1.35 16 16 C -0.11 -2.55 6.40 31.49 0.20 -2.35 16 17 C -0.05 -1.06 3.28 -10.65 -0.03 -1.09 16 18 H 0.08 1.93 7.93 -2.38 -0.02 1.91 16 19 C -0.06 -1.13 4.75 -19.87 -0.09 -1.22 16 20 C -0.11 -1.85 8.08 22.27 0.18 -1.67 16 21 C -0.10 -1.35 10.05 22.27 0.22 -1.12 16 22 C -0.12 -1.73 9.83 22.29 0.22 -1.52 16 23 C -0.04 -0.76 6.32 22.32 0.14 -0.62 16 24 Cl -0.08 -1.31 28.96 -2.72 -0.08 -1.39 16 25 C -0.12 -2.21 9.46 22.29 0.21 -1.99 16 26 C 0.04 0.91 5.75 86.45 0.50 1.40 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.48 5.88 -2.39 -0.01 1.46 16 29 H 0.07 1.46 6.31 -2.39 -0.02 1.44 16 30 H 0.05 2.09 6.62 -2.39 -0.02 2.08 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 33 H 0.00 0.26 7.63 -2.39 -0.02 0.25 16 34 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 35 H 0.06 2.02 7.55 -2.39 -0.02 2.00 16 36 H 0.06 1.53 5.70 -2.38 -0.01 1.52 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.70 7.28 -2.39 -0.02 1.68 16 39 H 0.13 1.99 7.79 -2.91 -0.02 1.97 16 40 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.13 2.39 7.97 -2.91 -0.02 2.37 16 43 H 0.07 1.49 4.32 -2.39 -0.01 1.48 16 44 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -67.10 357.77 2.74 -64.35 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.98 Total: 11.27 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 3.68 Total: -42.28 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -3.86 Total: -79.27 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -67.10 2.74 -64.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.789 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds