Wall clock time and date at job start Fri Apr 10 2020 21:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47164 * 119.99823 * 2 1 3 5 5 C 1.53001 * 109.47309 * 186.01707 * 4 2 1 6 6 C 1.50697 * 109.47165 * 176.29749 * 5 4 2 7 7 H 1.07999 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00034 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00340 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00296 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47008 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47268 * 119.99890 * 10 8 6 13 13 H 1.48502 * 109.47402 * 240.00283 * 10 8 6 14 14 N 1.46892 * 109.47622 * 239.99910 * 2 1 3 15 15 C 1.47448 * 111.00106 * 68.20126 * 14 2 1 16 16 C 1.54315 * 107.23728 * 236.74773 * 15 14 2 17 17 C 1.55139 * 103.01708 * 337.71484 * 16 15 14 18 18 C 1.47850 * 110.99925 * 307.36446 * 14 2 1 19 19 H 1.09001 * 110.37086 * 27.52965 * 18 14 2 20 20 C 1.50699 * 110.37367 * 265.19042 * 18 14 2 21 21 C 1.38243 * 119.98639 * 319.72739 * 20 18 14 22 22 C 1.38215 * 120.01645 * 179.72518 * 21 20 18 23 23 C 1.38356 * 119.98061 * 0.54424 * 22 21 20 24 24 Cl 1.73596 * 120.01246 * 179.74633 * 23 22 21 25 25 C 1.38353 * 119.97528 * 359.72891 * 23 22 21 26 26 C 1.38209 * 119.98747 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.47600 * 308.22229 * 1 2 3 28 28 H 1.09002 * 109.47042 * 68.22164 * 1 2 3 29 29 H 1.08998 * 109.47304 * 188.22047 * 1 2 3 30 30 H 1.09003 * 109.46893 * 306.01547 * 4 2 1 31 31 H 1.09001 * 109.46893 * 66.01288 * 4 2 1 32 32 H 1.09007 * 109.46895 * 296.29858 * 5 4 2 33 33 H 1.08998 * 109.47063 * 56.29606 * 5 4 2 34 34 H 0.97000 * 120.00316 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.88685 * 356.15807 * 15 14 2 36 36 H 1.08999 * 109.88561 * 117.33918 * 15 14 2 37 37 H 1.08997 * 110.70636 * 96.09566 * 16 15 14 38 38 H 1.09000 * 110.70403 * 219.33467 * 16 15 14 39 39 H 1.09007 * 110.99339 * 277.55842 * 17 16 15 40 40 H 1.09006 * 110.99413 * 153.74547 * 17 16 15 41 41 H 1.07997 * 119.99408 * 359.97438 * 21 20 18 42 42 H 1.07997 * 120.01269 * 180.27279 * 22 21 20 43 43 H 1.08007 * 120.00784 * 180.02562 * 25 23 22 44 44 H 1.08006 * 119.99798 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5625 -0.5916 1.3272 6 6 4.0557 -1.2230 2.6036 7 1 3.3536 -1.6722 3.2903 8 6 5.4035 -1.2281 2.8941 9 7 6.2586 -0.6816 2.0577 10 14 6.0149 -2.0101 4.4766 11 1 4.8611 -2.5503 5.2397 12 1 6.9539 -3.1140 4.1527 13 1 6.7156 -0.9883 5.2952 14 7 2.0197 -0.6925 -1.1993 15 6 1.7140 0.0801 -2.4174 16 6 0.8932 -0.8381 -3.3473 17 6 1.2647 -2.2602 -2.8508 18 6 1.4066 -2.0319 -1.3252 19 1 0.4275 -2.0476 -0.8464 20 6 2.3051 -3.0792 -0.7194 21 6 3.6730 -3.0080 -0.9061 22 6 4.4980 -3.9650 -0.3460 23 6 3.9536 -5.0007 0.3923 24 17 4.9886 -6.2068 1.0906 25 6 2.5841 -5.0746 0.5741 26 6 1.7606 -4.1142 0.0177 27 1 -0.3634 0.6358 0.8073 28 1 -0.3633 0.3813 -0.9543 29 1 -0.3634 -1.0171 0.1469 30 1 1.5914 -0.2733 2.1360 31 1 1.7672 -1.7753 1.1971 32 1 4.0143 -1.0970 0.4736 33 1 3.8386 0.4627 1.3131 34 1 7.2068 -0.6849 2.2623 35 1 1.1304 0.9637 -2.1593 36 1 2.6397 0.3757 -2.9111 37 1 -0.1743 -0.6542 -3.2261 38 1 1.1934 -0.7020 -4.3862 39 1 2.2078 -2.5916 -3.2855 40 1 0.4662 -2.9702 -3.0667 41 1 4.0974 -2.2021 -1.4865 42 1 5.5670 -3.9068 -0.4882 43 1 2.1586 -5.8827 1.1507 44 1 0.6914 -4.1715 0.1599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:51 Heat of formation + Delta-G solvation = 12.431233 kcal Electronic energy + Delta-G solvation = -24444.356062 eV Core-core repulsion = 21193.766132 eV Total energy + Delta-G solvation = -3250.589929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07604 -38.09841 -35.93971 -34.64114 -32.62168 -31.44880 -30.53434 -29.76083 -28.47332 -27.33478 -25.03971 -22.85041 -22.30254 -21.53118 -20.95742 -20.27165 -18.71652 -16.76271 -16.20838 -15.93506 -15.51070 -14.83608 -14.71442 -14.32512 -13.82954 -13.51866 -13.13795 -13.02737 -12.86324 -12.74238 -12.69783 -12.33156 -11.97559 -11.78916 -11.68593 -11.30268 -11.17319 -11.06598 -10.99447 -10.90325 -10.69387 -10.53419 -10.45756 -10.37337 -10.29220 -10.07904 -9.60453 -9.13781 -8.81761 -8.40897 -8.12537 -7.94675 -7.83893 -5.82715 -3.81701 1.68677 1.89454 2.63705 3.40282 3.48303 3.51918 4.06257 4.33570 4.60129 4.72343 4.87796 5.03643 5.19017 5.31204 5.37978 5.40574 5.49474 5.51340 5.54288 5.64708 5.67151 5.79366 5.85877 5.89394 5.94155 6.01321 6.10940 6.15008 6.22992 6.24434 6.36965 6.42761 6.49305 6.68142 6.72497 6.85849 6.91654 7.07864 7.33849 7.37514 7.45770 7.58340 7.91289 8.13524 8.28542 8.64480 9.25669 9.80551 11.28156 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.006660 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.063046 B = 4203.417448 C = 5789.695087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.077 3.923 3 H 0.077 0.923 4 C -0.105 4.105 5 C 0.030 3.970 6 C -0.508 4.508 7 H 0.047 0.953 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.875 3.125 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.287 1.287 14 N -0.504 5.504 15 C 0.041 3.959 16 C -0.140 4.140 17 C -0.120 4.120 18 C 0.107 3.893 19 H 0.069 0.931 20 C -0.057 4.057 21 C -0.052 4.052 22 C -0.095 4.095 23 C -0.029 4.029 24 Cl -0.090 7.090 25 C -0.116 4.116 26 C -0.111 4.111 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.004 0.996 34 H 0.255 0.745 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.007 -4.514 -10.794 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 H 0.095 0.905 4 C -0.143 4.143 5 C -0.006 4.006 6 C -0.546 4.546 7 H 0.065 0.935 8 C -0.137 4.137 9 N -0.533 5.533 10 Si 0.703 3.297 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.213 1.213 14 N -0.227 5.227 15 C -0.087 4.087 16 C -0.179 4.179 17 C -0.158 4.158 18 C -0.001 4.001 19 H 0.087 0.913 20 C -0.057 4.057 21 C -0.071 4.071 22 C -0.114 4.114 23 C -0.055 4.055 24 Cl -0.062 7.062 25 C -0.135 4.135 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.188 -4.613 -10.689 15.470 hybrid contribution -0.277 -0.306 1.234 1.301 sum -10.465 -4.918 -9.455 14.936 Atomic orbital electron populations 1.22534 0.98942 1.01642 1.01201 1.22047 0.90994 0.98536 0.91585 0.90479 1.21747 1.01049 0.98675 0.92817 1.19050 0.88015 0.96413 0.97170 1.21284 0.91827 1.36198 1.05333 0.93515 1.24870 0.97088 0.95636 0.96152 1.69970 1.01957 1.45516 1.35878 0.86802 0.78980 0.79269 0.84631 1.19956 1.20993 1.21333 1.63593 1.56489 1.01111 1.01549 1.22808 0.99012 0.95967 0.90914 1.22790 0.99754 0.95512 0.99829 1.22757 1.02051 0.96557 0.94435 1.21496 0.95263 0.88641 0.94707 0.91284 1.19575 0.94319 0.94509 0.97338 1.20793 0.92324 0.96102 0.97863 1.20984 1.00451 0.93042 0.96880 1.20797 0.90987 0.93266 1.00448 1.98330 1.68106 1.55949 1.83771 1.20750 0.91417 1.00172 1.01179 1.20734 0.99033 0.94756 0.98448 0.92361 0.93328 0.92545 0.93735 0.92848 0.94185 0.97796 0.93496 0.92845 0.90652 0.91885 0.91058 0.90426 0.91176 0.84836 0.85580 0.85963 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.40 37.16 0.31 -2.15 16 2 C 0.08 1.26 2.11 -67.72 -0.14 1.12 16 3 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 4 C -0.11 -2.15 4.27 -26.73 -0.11 -2.27 16 5 C 0.03 0.77 4.83 -27.88 -0.13 0.64 16 6 C -0.51 -14.46 9.11 -34.44 -0.31 -14.77 16 7 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 8 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 10 Si 0.87 22.47 29.54 -169.99 -5.02 17.45 16 11 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 N -0.50 -7.71 3.70 -216.84 -0.80 -8.52 16 15 C 0.04 0.51 6.23 -2.83 -0.02 0.49 16 16 C -0.14 -1.43 6.94 -24.91 -0.17 -1.60 16 17 C -0.12 -1.35 6.47 -24.59 -0.16 -1.51 16 18 C 0.11 1.48 1.94 -67.34 -0.13 1.35 16 19 H 0.07 0.94 5.14 -51.93 -0.27 0.67 16 20 C -0.06 -0.90 3.22 -104.62 -0.34 -1.24 16 21 C -0.05 -0.93 7.01 -39.59 -0.28 -1.21 16 22 C -0.09 -1.76 9.83 -39.55 -0.39 -2.15 16 23 C -0.03 -0.51 6.32 -39.50 -0.25 -0.76 16 24 Cl -0.09 -1.54 28.96 -51.86 -1.50 -3.04 16 25 C -0.12 -1.88 9.83 -39.55 -0.39 -2.26 16 26 C -0.11 -1.69 9.10 -39.59 -0.36 -2.05 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.57 6.70 -51.93 -0.35 0.23 16 29 H 0.06 0.74 6.19 -51.93 -0.32 0.42 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.09 5.49 -51.93 -0.29 0.81 16 32 H 0.04 1.05 5.48 -51.93 -0.28 0.76 16 33 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.05 0.64 6.61 -51.93 -0.34 0.29 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 2.43 7.69 -52.49 -0.40 2.03 16 42 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 43 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 44 H 0.12 1.51 8.04 -52.48 -0.42 1.08 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -30.24 354.36 -11.07 -41.31 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.85 Total: 0.22 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -2.97 Total: -26.65 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.07 Total: -34.63 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.50 Total: -3.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.24 -11.07 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.743 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds