Wall clock time and date at job start Fri Apr 10 2020 21:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47164 * 119.99823 * 2 1 3 5 5 C 1.53001 * 109.47309 * 186.01707 * 4 2 1 6 6 C 1.50697 * 109.47165 * 176.29749 * 5 4 2 7 7 H 1.07999 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00034 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00340 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00296 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47008 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47268 * 119.99890 * 10 8 6 13 13 H 1.48502 * 109.47402 * 240.00283 * 10 8 6 14 14 N 1.46892 * 109.47622 * 239.99910 * 2 1 3 15 15 C 1.47448 * 111.00106 * 68.20126 * 14 2 1 16 16 C 1.54315 * 107.23728 * 236.74773 * 15 14 2 17 17 C 1.55139 * 103.01708 * 337.71484 * 16 15 14 18 18 C 1.47850 * 110.99925 * 307.36446 * 14 2 1 19 19 H 1.09001 * 110.37086 * 27.52965 * 18 14 2 20 20 C 1.50699 * 110.37367 * 265.19042 * 18 14 2 21 21 C 1.38243 * 119.98639 * 319.72739 * 20 18 14 22 22 C 1.38215 * 120.01645 * 179.72518 * 21 20 18 23 23 C 1.38356 * 119.98061 * 0.54424 * 22 21 20 24 24 Cl 1.73596 * 120.01246 * 179.74633 * 23 22 21 25 25 C 1.38353 * 119.97528 * 359.72891 * 23 22 21 26 26 C 1.38209 * 119.98747 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.47600 * 308.22229 * 1 2 3 28 28 H 1.09002 * 109.47042 * 68.22164 * 1 2 3 29 29 H 1.08998 * 109.47304 * 188.22047 * 1 2 3 30 30 H 1.09003 * 109.46893 * 306.01547 * 4 2 1 31 31 H 1.09001 * 109.46893 * 66.01288 * 4 2 1 32 32 H 1.09007 * 109.46895 * 296.29858 * 5 4 2 33 33 H 1.08998 * 109.47063 * 56.29606 * 5 4 2 34 34 H 0.97000 * 120.00316 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.88685 * 356.15807 * 15 14 2 36 36 H 1.08999 * 109.88561 * 117.33918 * 15 14 2 37 37 H 1.08997 * 110.70636 * 96.09566 * 16 15 14 38 38 H 1.09000 * 110.70403 * 219.33467 * 16 15 14 39 39 H 1.09007 * 110.99339 * 277.55842 * 17 16 15 40 40 H 1.09006 * 110.99413 * 153.74547 * 17 16 15 41 41 H 1.07997 * 119.99408 * 359.97438 * 21 20 18 42 42 H 1.07997 * 120.01269 * 180.27279 * 22 21 20 43 43 H 1.08007 * 120.00784 * 180.02562 * 25 23 22 44 44 H 1.08006 * 119.99798 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5625 -0.5916 1.3272 6 6 4.0557 -1.2230 2.6036 7 1 3.3536 -1.6722 3.2903 8 6 5.4035 -1.2281 2.8941 9 7 6.2586 -0.6816 2.0577 10 14 6.0149 -2.0101 4.4766 11 1 4.8611 -2.5503 5.2397 12 1 6.9539 -3.1140 4.1527 13 1 6.7156 -0.9883 5.2952 14 7 2.0197 -0.6925 -1.1993 15 6 1.7140 0.0801 -2.4174 16 6 0.8932 -0.8381 -3.3473 17 6 1.2647 -2.2602 -2.8508 18 6 1.4066 -2.0319 -1.3252 19 1 0.4275 -2.0476 -0.8464 20 6 2.3051 -3.0792 -0.7194 21 6 3.6730 -3.0080 -0.9061 22 6 4.4980 -3.9650 -0.3460 23 6 3.9536 -5.0007 0.3923 24 17 4.9886 -6.2068 1.0906 25 6 2.5841 -5.0746 0.5741 26 6 1.7606 -4.1142 0.0177 27 1 -0.3634 0.6358 0.8073 28 1 -0.3633 0.3813 -0.9543 29 1 -0.3634 -1.0171 0.1469 30 1 1.5914 -0.2733 2.1360 31 1 1.7672 -1.7753 1.1971 32 1 4.0143 -1.0970 0.4736 33 1 3.8386 0.4627 1.3131 34 1 7.2068 -0.6849 2.2623 35 1 1.1304 0.9637 -2.1593 36 1 2.6397 0.3757 -2.9111 37 1 -0.1743 -0.6542 -3.2261 38 1 1.1934 -0.7020 -4.3862 39 1 2.2078 -2.5916 -3.2855 40 1 0.4662 -2.9702 -3.0667 41 1 4.0974 -2.2021 -1.4865 42 1 5.5670 -3.9068 -0.4882 43 1 2.1586 -5.8827 1.1507 44 1 0.6914 -4.1715 0.1599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172503970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:50 Heat of formation + Delta-G solvation = -2.354195 kcal Electronic energy + Delta-G solvation = -24444.997206 eV Core-core repulsion = 21193.766132 eV Total energy + Delta-G solvation = -3251.231074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24568 -39.34570 -37.28021 -36.15981 -34.53405 -32.67699 -31.86408 -31.41848 -29.63114 -28.44345 -26.93904 -24.08431 -23.66444 -23.09618 -21.96969 -21.75595 -19.97501 -18.30768 -17.98603 -17.26669 -16.65925 -16.51423 -16.02239 -15.90356 -15.06467 -14.65108 -14.56882 -14.42992 -14.26299 -14.12020 -14.03086 -13.73473 -13.42125 -13.05798 -13.02960 -12.88153 -12.74362 -12.42981 -12.39939 -12.32397 -12.07251 -11.94776 -11.73150 -11.67160 -11.61669 -11.47063 -11.26973 -11.12290 -10.80969 -10.42248 -9.70146 -9.25686 -8.96673 -8.08056 -6.13458 0.37343 0.57579 1.28507 1.34174 1.37407 1.46533 2.44372 2.80533 3.18105 3.26268 3.74952 3.90969 3.98872 4.12213 4.13385 4.17343 4.24007 4.37291 4.44659 4.51590 4.57633 4.70552 4.75944 4.80779 4.88437 4.93685 5.02380 5.03729 5.06369 5.09447 5.18107 5.21578 5.22363 5.37371 5.42924 5.46133 5.51870 5.56660 5.66763 5.77077 6.00185 6.06799 6.16966 6.33592 6.42124 6.44279 7.04722 7.52514 9.02671 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.006660 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.063046 B = 4203.417448 C = 5789.695087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.083 3.917 3 H 0.060 0.940 4 C -0.094 4.094 5 C 0.041 3.959 6 C -0.521 4.521 7 H 0.042 0.958 8 C 0.016 3.984 9 N -0.924 5.924 10 Si 0.931 3.069 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.280 1.280 14 N -0.530 5.530 15 C 0.038 3.962 16 C -0.128 4.128 17 C -0.115 4.115 18 C 0.106 3.894 19 H 0.083 0.917 20 C -0.056 4.056 21 C -0.065 4.065 22 C -0.119 4.119 23 C -0.046 4.046 24 Cl -0.090 7.090 25 C -0.118 4.118 26 C -0.109 4.109 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.029 0.971 33 H -0.033 1.033 34 H 0.257 0.743 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.145 0.855 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 -5.137 -11.124 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.026 4.026 3 H 0.079 0.921 4 C -0.132 4.132 5 C 0.004 3.996 6 C -0.559 4.559 7 H 0.060 0.940 8 C -0.182 4.182 9 N -0.565 5.565 10 Si 0.757 3.243 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.206 1.206 14 N -0.254 5.254 15 C -0.089 4.089 16 C -0.166 4.166 17 C -0.153 4.153 18 C -0.001 4.001 19 H 0.101 0.899 20 C -0.057 4.057 21 C -0.084 4.084 22 C -0.138 4.138 23 C -0.073 4.073 24 Cl -0.061 7.061 25 C -0.136 4.136 26 C -0.128 4.128 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.048 0.952 33 H -0.015 1.015 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.163 0.837 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.079 -5.233 -11.022 17.886 hybrid contribution 0.669 -0.090 1.324 1.487 sum -12.410 -5.323 -9.697 16.625 Atomic orbital electron populations 1.22398 0.95753 1.02421 1.02621 1.21791 0.93390 0.97000 0.90369 0.92128 1.21546 0.97261 0.99370 0.94989 1.18877 0.91701 0.93418 0.95623 1.21636 0.92010 1.36008 1.06279 0.93960 1.25574 0.97430 0.96170 0.99030 1.70081 1.02187 1.46653 1.37551 0.85912 0.78588 0.78520 0.81269 1.19144 1.20864 1.20594 1.63432 1.57734 1.02133 1.02095 1.22835 0.99273 0.96570 0.90226 1.22742 1.00273 0.93671 0.99895 1.22742 1.02426 0.97891 0.92206 1.21591 0.94832 0.87139 0.96576 0.89918 1.19891 0.93715 0.95276 0.96802 1.20722 0.93523 0.95716 0.98447 1.21004 1.00026 0.94367 0.98431 1.20953 0.91960 0.93344 1.01002 1.98318 1.68344 1.55753 1.83733 1.21101 0.90671 1.00939 1.00928 1.21143 1.00686 0.93766 0.97170 0.92021 0.91142 0.91724 0.94378 0.92594 0.95228 1.01463 0.93449 0.92030 0.91750 0.90035 0.89538 0.91569 0.88835 0.86443 0.87144 0.83686 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.40 71.98 0.60 -3.46 16 2 C 0.08 2.65 2.11 44.92 0.09 2.75 16 3 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 4 C -0.09 -3.82 4.27 30.60 0.13 -3.69 16 5 C 0.04 2.14 4.83 29.85 0.14 2.28 16 6 C -0.52 -30.20 9.11 25.60 0.23 -29.96 16 7 H 0.04 2.44 7.74 -2.91 -0.02 2.41 16 8 C 0.02 0.92 5.46 84.65 0.46 1.38 16 9 N -0.92 -57.10 13.29 21.45 0.28 -56.81 16 10 Si 0.93 46.51 29.54 68.60 2.03 48.54 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 13 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 14 N -0.53 -15.68 3.70 -839.94 -3.11 -18.79 16 15 C 0.04 0.89 6.23 86.64 0.54 1.43 16 16 C -0.13 -2.14 6.94 31.77 0.22 -1.92 16 17 C -0.11 -2.24 6.47 31.98 0.21 -2.03 16 18 C 0.11 2.69 1.94 44.64 0.09 2.78 16 19 H 0.08 1.90 5.14 -2.39 -0.01 1.89 16 20 C -0.06 -1.72 3.22 -19.86 -0.06 -1.79 16 21 C -0.07 -2.40 7.01 22.27 0.16 -2.24 16 22 C -0.12 -4.63 9.83 22.29 0.22 -4.42 16 23 C -0.05 -1.65 6.32 22.33 0.14 -1.51 16 24 Cl -0.09 -3.08 28.96 -2.72 -0.08 -3.15 16 25 C -0.12 -3.62 9.83 22.29 0.22 -3.40 16 26 C -0.11 -3.07 9.10 22.26 0.20 -2.87 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.37 6.70 -2.39 -0.02 1.35 16 29 H 0.06 1.43 6.19 -2.39 -0.01 1.41 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.06 2.23 5.49 -2.39 -0.01 2.22 16 32 H 0.03 1.61 5.48 -2.38 -0.01 1.60 16 33 H -0.03 -1.95 8.14 -2.39 -0.02 -1.97 16 34 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.06 1.32 6.61 -2.39 -0.02 1.31 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.45 7.90 -2.38 -0.02 1.44 16 40 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.12 4.57 7.69 -2.91 -0.02 4.55 16 42 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 44 H 0.15 3.22 8.04 -2.91 -0.02 3.20 16 Total: -1.00 -66.83 354.36 3.70 -63.13 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.98 Total: 13.77 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 3.60 Total: -46.68 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -2.82 Total: -75.60 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.08 Total: -3.15 kcal Total: -66.83 3.70 -63.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.773 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds