Wall clock time and date at job start Fri Apr 10 2020 21:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99649 * 2 1 4 4 C 1.53003 * 109.46719 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47298 * 65.00020 * 4 3 2 6 6 C 1.46504 * 120.00098 * 270.00055 * 5 4 3 7 7 C 1.50700 * 109.46988 * 276.04736 * 6 5 4 8 8 H 1.08003 * 120.00163 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00121 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99937 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00067 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47443 * 59.99406 * 11 9 7 13 13 H 1.48496 * 109.47126 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46797 * 299.99323 * 11 9 7 15 15 C 1.34775 * 120.00141 * 89.99401 * 5 4 3 16 16 O 1.21579 * 120.00097 * 5.31694 * 15 5 4 17 17 C 1.47606 * 120.00131 * 185.31313 * 15 5 4 18 18 C 1.39751 * 120.09080 * 306.67026 * 17 15 5 19 19 C 1.37682 * 119.91661 * 180.27529 * 18 17 15 20 20 C 1.39019 * 120.08307 * 359.97438 * 19 18 17 21 21 O 1.35717 * 119.91055 * 179.97438 * 20 19 18 22 22 C 1.42897 * 116.99705 * 0.02562 * 21 20 19 23 23 C 1.38982 * 120.18035 * 359.97438 * 20 19 18 24 24 C 1.37724 * 120.08550 * 0.02562 * 23 20 19 25 25 C 1.50693 * 120.04314 * 179.97438 * 24 23 20 26 26 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47524 * 300.00575 * 1 2 3 28 28 H 1.08995 * 109.47141 * 60.00462 * 1 2 3 29 29 H 1.08998 * 109.47474 * 60.00036 * 3 2 1 30 30 H 1.09002 * 109.46795 * 299.99147 * 3 2 1 31 31 H 1.08995 * 109.47412 * 304.99780 * 4 3 2 32 32 H 1.09004 * 109.47280 * 184.99505 * 4 3 2 33 33 H 1.08999 * 109.46897 * 36.04372 * 6 5 4 34 34 H 1.08998 * 109.47548 * 156.04695 * 6 5 4 35 35 H 0.96996 * 120.00036 * 180.02562 * 10 9 7 36 36 H 1.08002 * 120.04396 * 0.24954 * 18 17 15 37 37 H 1.07996 * 119.95592 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47494 * 60.00298 * 22 21 20 39 39 H 1.09007 * 109.46966 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47353 * 299.99963 * 22 21 20 41 41 H 1.07996 * 119.95844 * 180.02562 * 23 20 19 42 42 H 1.08998 * 109.47453 * 273.94729 * 25 24 23 43 43 H 1.09000 * 109.46941 * 33.95086 * 25 24 23 44 44 H 1.08998 * 109.47082 * 153.94928 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.1062 -0.8925 -1.3403 7 6 5.4497 -1.3113 -0.8011 8 1 6.1384 -0.5669 -0.4295 9 6 5.8003 -2.6446 -0.7833 10 7 4.9620 -3.5510 -1.2363 11 14 7.4653 -3.1638 -0.1143 12 1 7.5816 -2.7432 1.3050 13 1 7.5968 -4.6401 -0.2051 14 1 8.5411 -2.5207 -0.9109 15 6 4.2632 1.3329 -2.3200 16 8 4.2494 2.5444 -2.2188 17 6 4.5940 0.7042 -3.6138 18 6 5.6056 -0.2572 -3.6874 19 6 5.9151 -0.8372 -4.8971 20 6 5.2223 -0.4680 -6.0444 21 8 5.5306 -1.0416 -7.2352 22 6 6.5759 -2.0158 -7.2345 23 6 4.2149 0.4870 -5.9754 24 6 3.8994 1.0718 -4.7691 25 6 2.8073 2.1075 -4.6954 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.8507 0.5686 0.8427 32 1 3.9784 2.1766 0.0901 33 1 3.3168 -1.3641 -0.7550 34 1 4.0203 -1.2017 -2.3819 35 1 5.2084 -4.4891 -1.2234 36 1 6.1443 -0.5445 -2.7965 37 1 6.6970 -1.5799 -4.9547 38 1 6.3046 -2.8395 -6.5742 39 1 6.7210 -2.3937 -8.2467 40 1 7.4999 -1.5572 -6.8825 41 1 3.6787 0.7708 -6.8689 42 1 3.2214 3.0892 -4.9252 43 1 2.0269 1.8644 -5.4165 44 1 2.3836 2.1179 -3.6912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610387435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:33 Heat of formation + Delta-G solvation = -93.143356 kcal Electronic energy + Delta-G solvation = -26470.821866 eV Core-core repulsion = 22774.944715 eV Total energy + Delta-G solvation = -3695.877152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.10539 -39.01946 -37.51632 -36.63671 -34.94550 -32.64981 -32.06701 -30.75438 -29.34352 -27.45814 -27.03777 -26.29101 -25.83934 -23.30971 -22.84728 -22.00644 -20.78366 -18.63801 -17.38820 -16.80972 -16.50025 -16.24342 -15.81573 -15.66470 -15.52522 -15.07720 -14.60649 -14.49153 -14.12604 -13.81863 -13.37951 -13.24701 -13.03250 -12.86260 -12.30112 -12.21158 -11.99180 -11.92094 -11.69637 -11.63489 -11.50098 -11.46296 -11.35906 -10.96232 -10.85317 -10.69447 -10.41373 -10.31784 -10.08434 -9.71562 -9.37520 -9.03638 -8.54589 -8.30843 -7.75423 -7.61152 -6.15099 -4.22280 1.61587 1.86832 3.22424 3.28283 3.30366 3.43970 3.48091 3.92156 4.16594 4.26927 4.39329 5.11714 5.16149 5.22306 5.30566 5.32838 5.40409 5.42049 5.49043 5.53522 5.60963 5.66610 5.68579 5.73029 5.75842 5.87591 5.88926 5.97939 6.09075 6.19478 6.27282 6.40562 6.60110 6.69259 6.89493 6.91339 7.03409 7.17288 7.40687 7.51276 7.62876 7.69931 7.81781 8.11522 8.40824 8.81715 9.03576 9.43050 10.90646 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.006998 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.624676 B = 3999.994477 C = 6131.288822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.581 5.581 6 C 0.234 3.766 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.882 5.882 11 Si 0.890 3.110 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.563 3.437 16 O -0.573 6.573 17 C -0.157 4.157 18 C -0.019 4.019 19 C -0.219 4.219 20 C 0.139 3.861 21 O -0.321 6.321 22 C 0.027 3.973 23 C -0.172 4.172 24 C -0.010 4.010 25 C -0.108 4.108 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.162 0.838 37 H 0.127 0.873 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 4.834 -5.676 8.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.310 5.310 6 C 0.114 3.886 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.519 5.519 11 Si 0.717 3.283 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.352 3.648 16 O -0.455 6.455 17 C -0.160 4.160 18 C -0.037 4.037 19 C -0.238 4.238 20 C 0.094 3.906 21 O -0.235 6.235 22 C -0.068 4.068 23 C -0.191 4.191 24 C -0.010 4.010 25 C -0.165 4.165 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.179 0.821 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.447 5.072 -5.812 8.449 hybrid contribution 0.905 -0.625 0.562 1.235 sum -2.542 4.447 -5.250 7.334 Atomic orbital electron populations 1.22677 0.82251 1.02383 0.99110 1.88077 1.18584 1.27367 1.95174 1.23030 0.95315 0.84956 0.99636 1.21337 0.90978 0.99698 0.88296 1.48113 1.63026 1.10090 1.09784 1.19614 0.97308 0.72660 0.98980 1.21461 1.01463 0.92409 1.42636 0.92177 1.24913 0.97150 0.96378 0.95040 1.69935 1.35398 1.01433 1.45157 0.86685 0.84190 0.77512 0.79875 1.20086 1.21157 1.20091 1.18210 0.76447 0.86107 0.84042 1.90663 1.55349 1.14127 1.85394 1.19646 1.01335 1.01671 0.93335 1.21867 0.93781 0.89518 0.98498 1.21153 1.04547 1.05508 0.92569 1.19179 0.94267 0.92854 0.84311 1.85957 1.53787 1.54405 1.29309 1.23036 0.89413 0.90965 1.03391 1.19952 1.00667 1.00586 0.97873 1.19546 0.95418 0.95034 0.91050 1.20759 0.95809 0.97190 1.02722 0.89897 0.94758 0.94675 0.93205 0.93561 0.89293 0.89348 0.93396 0.93904 0.92531 0.82077 0.85471 0.92284 0.88671 0.92683 0.85486 0.90650 0.91887 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.79 9.44 -35.23 -0.33 -7.12 16 3 C 0.05 0.80 6.28 37.16 0.23 1.03 16 4 C 0.12 2.26 5.87 -4.04 -0.02 2.24 16 5 N -0.58 -12.60 2.42 -176.26 -0.43 -13.03 16 6 C 0.23 5.69 4.53 -5.19 -0.02 5.67 16 7 C -0.54 -13.81 7.04 -34.44 -0.24 -14.05 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.88 -24.03 13.29 55.43 0.74 -23.29 16 11 Si 0.89 20.12 29.54 -169.99 -5.02 15.09 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.56 12.28 6.12 -12.44 -0.08 12.20 16 16 O -0.57 -13.00 15.46 5.30 0.08 -12.92 16 17 C -0.16 -3.26 4.77 -104.96 -0.50 -3.76 16 18 C -0.02 -0.38 7.63 -39.22 -0.30 -0.68 16 19 C -0.22 -4.04 9.01 -39.50 -0.36 -4.40 16 20 C 0.14 2.42 6.70 -39.02 -0.26 2.16 16 21 O -0.32 -4.96 10.48 -18.86 -0.20 -5.16 16 22 C 0.03 0.32 9.81 101.05 0.99 1.31 16 23 C -0.17 -2.92 9.64 -39.49 -0.38 -3.30 16 24 C -0.01 -0.17 5.91 -104.26 -0.62 -0.79 16 25 C -0.11 -1.71 9.20 36.00 0.33 -1.38 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 32 H 0.09 1.58 7.35 -51.93 -0.38 1.20 16 33 H 0.05 1.27 7.03 -51.93 -0.36 0.91 16 34 H 0.04 1.11 5.57 -51.93 -0.29 0.82 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.16 3.66 5.31 -52.49 -0.28 3.38 16 37 H 0.13 2.11 6.28 -52.49 -0.33 1.78 16 38 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 41 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 44 H 0.07 1.17 6.61 -51.93 -0.34 0.83 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -30.04 361.75 -6.47 -36.51 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.55 Total: 4.96 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.21 Total: -0.50 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.31 Total: -36.32 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.45 Total: -25.20 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.04 -6.47 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.637 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds