Wall clock time and date at job start Fri Apr 10 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00158 * 2 1 4 4 C 1.52997 * 109.47395 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47070 * 64.99924 * 4 3 2 6 6 C 1.46500 * 120.00312 * 282.78263 * 5 4 3 7 7 C 1.50699 * 109.47368 * 270.00043 * 6 5 4 8 8 H 1.08004 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00305 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99775 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00132 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46869 * 89.99898 * 11 9 7 13 13 H 1.48497 * 109.47165 * 209.99465 * 11 9 7 14 14 H 1.48495 * 109.47033 * 330.00213 * 11 9 7 15 15 C 1.34781 * 119.99889 * 102.78746 * 5 4 3 16 16 O 1.21587 * 120.00249 * 186.99376 * 15 5 4 17 17 C 1.47533 * 119.99743 * 6.99090 * 15 5 4 18 18 C 1.39708 * 120.19335 * 326.70181 * 17 15 5 19 19 C 1.37787 * 119.91142 * 179.97438 * 18 17 15 20 20 C 1.38553 * 120.29765 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.80318 * 180.02562 * 20 19 18 22 22 C 1.38053 * 120.38984 * 359.73746 * 20 19 18 23 23 C 1.38714 * 120.08526 * 0.51406 * 22 20 19 24 24 O 1.35649 * 120.15230 * 179.76784 * 23 22 20 25 25 C 1.42904 * 116.99856 * 359.72182 * 24 23 22 26 26 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46854 * 299.99561 * 1 2 3 28 28 H 1.09000 * 109.47311 * 59.99874 * 1 2 3 29 29 H 1.09005 * 109.46696 * 59.99750 * 3 2 1 30 30 H 1.09004 * 109.47291 * 300.00632 * 3 2 1 31 31 H 1.09001 * 109.46840 * 305.00054 * 4 3 2 32 32 H 1.09000 * 109.47106 * 185.00830 * 4 3 2 33 33 H 1.08993 * 109.47001 * 30.00319 * 6 5 4 34 34 H 1.09004 * 109.47034 * 149.99929 * 6 5 4 35 35 H 0.96996 * 119.99733 * 179.97438 * 10 9 7 36 36 H 1.08005 * 120.04311 * 0.02562 * 18 17 15 37 37 H 1.07994 * 119.85120 * 180.02562 * 19 18 17 38 38 H 1.08992 * 109.47194 * 89.99761 * 21 20 19 39 39 H 1.09002 * 109.46799 * 209.99850 * 21 20 19 40 40 H 1.09002 * 109.47048 * 329.99025 * 21 20 19 41 41 H 1.07999 * 119.95963 * 180.26205 * 22 20 19 42 42 H 1.08999 * 109.46968 * 179.97438 * 25 24 23 43 43 H 1.09008 * 109.46879 * 60.00285 * 25 24 23 44 44 H 1.08998 * 109.47514 * 300.00012 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.8405 -0.8821 -1.4407 7 6 5.0895 -1.5708 -0.9544 8 1 5.9029 -0.9891 -0.5464 9 6 5.1944 -2.9434 -1.0312 10 7 4.2041 -3.6517 -1.5285 11 14 6.7424 -3.7971 -0.4276 12 1 6.5914 -4.1377 1.0099 13 1 6.9595 -5.0401 -1.2105 14 1 7.9068 -2.8923 -0.6022 15 6 4.5051 1.3247 -2.2316 16 8 4.7526 0.8338 -3.3161 17 6 4.7842 2.7527 -1.9872 18 6 3.9600 3.4943 -1.1373 19 6 4.2264 4.8274 -0.9128 20 6 5.3085 5.4370 -1.5268 21 6 5.5898 6.8956 -1.2729 22 6 6.1339 4.7147 -2.3652 23 6 5.8775 3.3731 -2.6067 24 8 6.6850 2.6632 -3.4339 25 6 7.7799 3.3626 -4.0290 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0891 33 1 2.9823 -1.2435 -0.8743 34 1 3.6947 -1.0988 -2.4990 35 1 4.2781 -4.6173 -1.5829 36 1 3.1156 3.0230 -0.6562 37 1 3.5888 5.3996 -0.2552 38 1 6.2534 6.9934 -0.4138 39 1 6.0657 7.3321 -2.1511 40 1 4.6539 7.4163 -1.0704 41 1 6.9779 5.1959 -2.8369 42 1 8.3438 2.6805 -4.6653 43 1 8.4314 3.7511 -3.2462 44 1 7.3999 4.1894 -4.6291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614822509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:46 Heat of formation + Delta-G solvation = -62.202533 kcal Electronic energy + Delta-G solvation = -26254.764454 eV Core-core repulsion = 22560.228997 eV Total energy + Delta-G solvation = -3694.535457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51825 -38.71812 -37.43188 -37.33711 -34.77288 -33.13548 -32.17622 -30.32074 -29.40272 -28.13612 -27.46030 -26.26096 -25.85453 -23.02154 -22.73334 -22.15257 -21.42060 -19.13116 -17.34277 -16.93694 -16.44930 -16.30788 -15.99790 -15.64369 -15.42777 -14.91754 -14.63864 -14.55586 -14.24602 -13.95275 -13.87375 -13.68295 -13.46214 -12.80682 -12.50172 -12.35757 -12.18937 -11.94805 -11.79498 -11.70294 -11.59350 -11.24493 -11.18363 -10.95528 -10.91722 -10.77519 -10.54394 -10.23718 -10.00876 -9.47166 -9.32843 -8.87527 -8.62297 -8.24812 -8.08380 -7.45187 -5.87152 -3.90138 1.07600 1.44731 3.35742 3.39649 3.41653 3.45344 3.50515 3.91023 4.11356 4.18490 4.57328 4.63320 4.76120 4.96241 5.06954 5.13029 5.19367 5.24759 5.34219 5.39613 5.45667 5.46679 5.48648 5.52607 5.54085 5.59276 5.60821 5.63889 5.68365 5.73730 5.96153 5.96937 6.22974 6.29667 6.35896 6.49215 6.75350 7.39113 7.49701 7.56413 7.70000 7.77746 8.12611 8.44444 8.61061 9.07839 9.26371 9.72784 11.20903 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.005296 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.110272 B = 5286.023499 C = 6991.064214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.041 3.959 4 C 0.080 3.920 5 N -0.584 5.584 6 C 0.245 3.755 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.550 3.450 16 O -0.524 6.524 17 C -0.158 4.158 18 C -0.074 4.074 19 C -0.170 4.170 20 C -0.036 4.036 21 C -0.115 4.115 22 C -0.221 4.221 23 C 0.181 3.819 24 O -0.283 6.283 25 C 0.025 3.975 26 H 0.085 0.915 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 20.885 3.059 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.037 4.037 4 C -0.044 4.044 5 N -0.315 5.315 6 C 0.127 3.873 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.336 3.664 16 O -0.400 6.400 17 C -0.162 4.162 18 C -0.092 4.092 19 C -0.188 4.188 20 C -0.036 4.036 21 C -0.172 4.172 22 C -0.240 4.240 23 C 0.133 3.867 24 O -0.194 6.194 25 C -0.071 4.071 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.169 0.831 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.185 19.998 2.359 20.172 hybrid contribution 0.804 -0.085 0.395 0.900 sum -0.381 19.913 2.753 20.106 Atomic orbital electron populations 1.22719 0.82196 1.02700 0.99010 1.88180 1.18626 1.26282 1.95063 1.23093 0.95182 0.85981 0.99459 1.22276 0.91599 1.00638 0.89857 1.48046 1.59438 1.10502 1.13559 1.19431 0.97494 0.71719 0.98691 1.21485 1.02016 0.91723 1.40859 0.92772 1.24889 0.96395 0.97253 0.95494 1.69951 1.31423 1.06275 1.45701 0.86561 0.83703 0.79018 0.78498 1.20759 1.21213 1.20047 1.17886 0.78842 0.84700 0.84934 1.90760 1.51901 1.73603 1.23782 1.19688 0.97691 0.96119 1.02742 1.21854 0.99002 0.93744 0.94584 1.20835 0.99520 0.94758 1.03731 1.19774 0.93759 0.95805 0.94306 1.20831 1.02410 0.91689 1.02260 1.21028 1.03735 0.93334 1.05895 1.18997 0.89493 0.89551 0.88613 1.86373 1.38413 1.37285 1.57310 1.23108 0.88046 0.98323 0.97595 0.89676 0.94755 0.94582 0.92908 0.93462 0.89599 0.87494 0.92498 0.94253 0.92982 0.83118 0.85592 0.90866 0.91579 0.91254 0.85211 0.88078 0.92875 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.65 8.47 -35.23 -0.30 -6.95 16 3 C 0.04 0.62 5.20 37.16 0.19 0.81 16 4 C 0.08 1.41 5.39 -4.05 -0.02 1.39 16 5 N -0.58 -13.51 2.48 -176.30 -0.44 -13.95 16 6 C 0.25 6.88 5.06 -5.19 -0.03 6.85 16 7 C -0.52 -15.68 9.39 -34.44 -0.32 -16.00 16 8 H 0.05 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 11 Si 0.89 22.84 29.54 -169.99 -5.02 17.82 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 C 0.55 12.94 7.29 -12.47 -0.09 12.85 16 16 O -0.52 -14.60 15.42 -13.05 -0.20 -14.81 16 17 C -0.16 -2.93 5.54 -104.85 -0.58 -3.52 16 18 C -0.07 -1.05 7.43 -39.20 -0.29 -1.34 16 19 C -0.17 -1.95 9.67 -39.63 -0.38 -2.33 16 20 C -0.04 -0.41 5.88 -104.57 -0.62 -1.02 16 21 C -0.12 -0.87 10.00 36.01 0.36 -0.51 16 22 C -0.22 -2.87 8.67 -39.47 -0.34 -3.21 16 23 C 0.18 3.12 6.67 -38.69 -0.26 2.86 16 24 O -0.28 -5.24 9.08 -36.98 -0.34 -5.58 16 25 C 0.02 0.30 9.81 101.05 0.99 1.29 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.11 1.58 3.82 -52.32 -0.20 1.38 16 33 H 0.06 1.63 6.01 -51.93 -0.31 1.32 16 34 H 0.04 1.25 7.34 -51.93 -0.38 0.87 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.15 1.92 3.29 -52.48 -0.17 1.75 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.54 7.65 -51.92 -0.40 0.14 16 44 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -37.96 358.85 -6.86 -44.83 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.34 Total: -1.12 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.37 Total: 1.39 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.30 Total: -40.99 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.84 Total: -27.33 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.96 -6.86 -44.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614822509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.375 kcal (2) G-P(sol) polarization free energy of solvation -37.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds