Wall clock time and date at job start Fri Apr 10 2020 21:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00158 * 2 1 4 4 C 1.52997 * 109.47395 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47070 * 64.99924 * 4 3 2 6 6 C 1.46500 * 120.00312 * 282.78263 * 5 4 3 7 7 C 1.50699 * 109.47368 * 270.00043 * 6 5 4 8 8 H 1.08004 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00305 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99775 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00132 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46869 * 89.99898 * 11 9 7 13 13 H 1.48497 * 109.47165 * 209.99465 * 11 9 7 14 14 H 1.48495 * 109.47033 * 330.00213 * 11 9 7 15 15 C 1.34781 * 119.99889 * 102.78746 * 5 4 3 16 16 O 1.21587 * 120.00249 * 186.99376 * 15 5 4 17 17 C 1.47533 * 119.99743 * 6.99090 * 15 5 4 18 18 C 1.39708 * 120.19335 * 326.70181 * 17 15 5 19 19 C 1.37787 * 119.91142 * 179.97438 * 18 17 15 20 20 C 1.38553 * 120.29765 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.80318 * 180.02562 * 20 19 18 22 22 C 1.38053 * 120.38984 * 359.73746 * 20 19 18 23 23 C 1.38714 * 120.08526 * 0.51406 * 22 20 19 24 24 O 1.35649 * 120.15230 * 179.76784 * 23 22 20 25 25 C 1.42904 * 116.99856 * 359.72182 * 24 23 22 26 26 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46854 * 299.99561 * 1 2 3 28 28 H 1.09000 * 109.47311 * 59.99874 * 1 2 3 29 29 H 1.09005 * 109.46696 * 59.99750 * 3 2 1 30 30 H 1.09004 * 109.47291 * 300.00632 * 3 2 1 31 31 H 1.09001 * 109.46840 * 305.00054 * 4 3 2 32 32 H 1.09000 * 109.47106 * 185.00830 * 4 3 2 33 33 H 1.08993 * 109.47001 * 30.00319 * 6 5 4 34 34 H 1.09004 * 109.47034 * 149.99929 * 6 5 4 35 35 H 0.96996 * 119.99733 * 179.97438 * 10 9 7 36 36 H 1.08005 * 120.04311 * 0.02562 * 18 17 15 37 37 H 1.07994 * 119.85120 * 180.02562 * 19 18 17 38 38 H 1.08992 * 109.47194 * 89.99761 * 21 20 19 39 39 H 1.09002 * 109.46799 * 209.99850 * 21 20 19 40 40 H 1.09002 * 109.47048 * 329.99025 * 21 20 19 41 41 H 1.07999 * 119.95963 * 180.26205 * 22 20 19 42 42 H 1.08999 * 109.46968 * 179.97438 * 25 24 23 43 43 H 1.09008 * 109.46879 * 60.00285 * 25 24 23 44 44 H 1.08998 * 109.47514 * 300.00012 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.8405 -0.8821 -1.4407 7 6 5.0895 -1.5708 -0.9544 8 1 5.9029 -0.9891 -0.5464 9 6 5.1944 -2.9434 -1.0312 10 7 4.2041 -3.6517 -1.5285 11 14 6.7424 -3.7971 -0.4276 12 1 6.5914 -4.1377 1.0099 13 1 6.9595 -5.0401 -1.2105 14 1 7.9068 -2.8923 -0.6022 15 6 4.5051 1.3247 -2.2316 16 8 4.7526 0.8338 -3.3161 17 6 4.7842 2.7527 -1.9872 18 6 3.9600 3.4943 -1.1373 19 6 4.2264 4.8274 -0.9128 20 6 5.3085 5.4370 -1.5268 21 6 5.5898 6.8956 -1.2729 22 6 6.1339 4.7147 -2.3652 23 6 5.8775 3.3731 -2.6067 24 8 6.6850 2.6632 -3.4339 25 6 7.7799 3.3626 -4.0290 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0891 33 1 2.9823 -1.2435 -0.8743 34 1 3.6947 -1.0988 -2.4990 35 1 4.2781 -4.6173 -1.5829 36 1 3.1156 3.0230 -0.6562 37 1 3.5888 5.3996 -0.2552 38 1 6.2534 6.9934 -0.4138 39 1 6.0657 7.3321 -2.1511 40 1 4.6539 7.4163 -1.0704 41 1 6.9779 5.1959 -2.8369 42 1 8.3438 2.6805 -4.6653 43 1 8.4314 3.7511 -3.2462 44 1 7.3999 4.1894 -4.6291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614822509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:55:45 Heat of formation + Delta-G solvation = -88.665627 kcal Electronic energy + Delta-G solvation = -26255.911980 eV Core-core repulsion = 22560.228997 eV Total energy + Delta-G solvation = -3695.682983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79650 -40.18055 -38.76962 -38.54176 -36.52793 -34.99431 -33.65818 -31.59666 -30.75121 -29.50685 -28.69881 -27.57820 -27.14562 -24.93698 -24.07088 -23.26760 -22.66304 -20.68873 -18.70915 -18.51979 -18.25061 -17.72182 -17.21385 -16.89181 -16.75099 -16.64937 -16.12211 -16.01814 -15.44332 -15.39151 -15.18096 -14.64695 -14.48099 -14.34732 -14.14360 -13.61191 -13.27943 -13.12532 -13.10417 -13.01518 -12.91790 -12.77340 -12.70303 -12.54835 -12.27571 -12.18985 -12.03556 -11.93987 -11.70893 -11.58836 -10.64313 -10.59911 -10.48452 -9.76759 -9.44748 -9.12874 -8.18342 -6.33095 -0.05072 0.40260 1.33235 1.37563 1.47813 1.92919 2.29636 2.36906 2.44988 2.78445 2.93514 3.10739 3.58910 3.79283 3.88831 4.10837 4.14115 4.23468 4.29143 4.33207 4.33856 4.35973 4.44562 4.52903 4.54034 4.60562 4.64373 4.71535 4.84406 4.88078 4.92439 4.94976 5.12959 5.27652 5.29162 5.32499 5.36312 5.56306 5.59029 5.82945 5.90986 6.12572 6.35450 6.45227 6.75031 6.82638 7.29872 7.49795 8.88826 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.005296 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.110272 B = 5286.023499 C = 6991.064214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.043 3.957 4 C 0.074 3.926 5 N -0.591 5.591 6 C 0.266 3.734 7 C -0.544 4.544 8 H 0.045 0.955 9 C 0.007 3.993 10 N -0.927 5.927 11 Si 0.969 3.031 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.540 3.460 16 O -0.590 6.590 17 C -0.201 4.201 18 C -0.073 4.073 19 C -0.157 4.157 20 C -0.022 4.022 21 C -0.114 4.114 22 C -0.218 4.218 23 C 0.158 3.842 24 O -0.335 6.335 25 C 0.016 3.984 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.047 0.953 34 H -0.016 1.016 35 H 0.266 0.734 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.157 0.843 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 24.766 5.503 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.034 4.034 4 C -0.047 4.047 5 N -0.321 5.321 6 C 0.146 3.854 7 C -0.583 4.583 8 H 0.064 0.936 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.793 3.207 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.201 1.201 15 C 0.330 3.670 16 O -0.472 6.472 17 C -0.205 4.205 18 C -0.090 4.090 19 C -0.175 4.175 20 C -0.023 4.023 21 C -0.170 4.170 22 C -0.236 4.236 23 C 0.110 3.890 24 O -0.247 6.247 25 C -0.078 4.078 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.158 0.842 33 H 0.065 0.935 34 H 0.002 0.998 35 H 0.075 0.925 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.175 0.825 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.760 23.926 4.851 24.425 hybrid contribution 0.640 -1.153 -0.386 1.374 sum -0.120 22.774 4.465 23.207 Atomic orbital electron populations 1.22874 0.80054 1.03050 1.00940 1.88099 1.21186 1.28430 1.95486 1.23170 0.92873 0.85364 1.02030 1.22677 0.94009 1.01494 0.86563 1.48011 1.59672 1.08723 1.15691 1.18794 0.96607 0.75268 0.94771 1.21720 1.02474 0.92541 1.41530 0.93624 1.25863 1.00104 0.97888 0.95293 1.70084 1.33567 1.06802 1.46237 0.85410 0.78780 0.77623 0.78927 1.18548 1.20258 1.20060 1.18792 0.77272 0.87043 0.83850 1.90688 1.54572 1.75592 1.26342 1.19469 1.00861 0.93260 1.06919 1.21959 0.98453 0.94929 0.93697 1.21323 0.99625 0.93425 1.03148 1.20365 0.92279 0.97737 0.91905 1.20951 1.04037 0.88563 1.03485 1.21341 1.04829 0.91436 1.06037 1.19344 0.89492 0.91177 0.88972 1.86300 1.40165 1.40019 1.58229 1.23391 0.87104 0.98854 0.98429 0.90319 0.91400 0.93884 0.87801 0.92970 0.91043 0.84159 0.93504 0.99796 0.92500 0.82013 0.81196 0.89219 0.90388 0.89193 0.82530 0.87893 0.90724 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -15.36 8.47 -148.98 -1.26 -16.63 16 3 C 0.04 1.24 5.20 71.98 0.37 1.62 16 4 C 0.07 2.65 5.39 86.38 0.47 3.12 16 5 N -0.59 -29.17 2.48 -829.95 -2.06 -31.23 16 6 C 0.27 16.19 5.06 85.63 0.43 16.62 16 7 C -0.54 -34.62 9.39 25.60 0.24 -34.38 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.44 5.46 84.65 0.46 0.90 16 10 N -0.93 -60.09 13.29 21.45 0.28 -59.80 16 11 Si 0.97 48.15 29.54 68.60 2.03 50.18 16 12 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 15 C 0.54 27.36 7.29 86.69 0.63 27.99 16 16 O -0.59 -36.22 15.42 13.54 0.21 -36.01 16 17 C -0.20 -7.64 5.54 -20.01 -0.11 -7.76 16 18 C -0.07 -1.92 7.43 22.52 0.17 -1.75 16 19 C -0.16 -2.88 9.67 22.24 0.22 -2.67 16 20 C -0.02 -0.40 5.88 -19.83 -0.12 -0.52 16 21 C -0.11 -1.03 10.00 71.24 0.71 -0.32 16 22 C -0.22 -5.10 8.67 22.34 0.19 -4.90 16 23 C 0.16 5.48 6.67 22.85 0.15 5.63 16 24 O -0.33 -13.06 9.08 -72.11 -0.65 -13.72 16 25 C 0.02 0.39 9.81 113.37 1.11 1.51 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.05 1.46 7.36 -2.38 -0.02 1.44 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.14 4.00 3.82 -2.75 -0.01 3.99 16 33 H 0.05 2.90 6.01 -2.39 -0.01 2.89 16 34 H -0.02 -1.13 7.34 -2.39 -0.02 -1.15 16 35 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 36 H 0.16 3.76 3.29 -2.91 -0.01 3.75 16 37 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 40 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 41 H 0.16 2.69 6.30 -2.91 -0.02 2.67 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.07 1.42 7.65 -2.38 -0.02 1.40 16 44 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 Total: -1.00 -93.36 358.85 5.73 -87.63 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.01 Total: 12.51 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.18 Total: 7.07 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -1.77 Total: -91.04 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -1.71 Total: -66.36 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -93.36 5.73 -87.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614822509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.033 kcal (2) G-P(sol) polarization free energy of solvation -93.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds