Wall clock time and date at job start Fri Apr 10 2020 21:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47264 * 2 1 4 4 C 1.52998 * 109.47264 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47246 * 59.99965 * 4 3 2 6 6 O 1.42898 * 109.47333 * 299.99893 * 4 3 2 7 7 C 1.53005 * 109.47338 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47456 * 184.99912 * 7 4 3 9 9 C 1.34777 * 120.00438 * 179.97438 * 8 7 4 10 10 O 1.21593 * 119.99250 * 0.02562 * 9 8 7 11 11 C 1.47526 * 120.00073 * 179.97438 * 9 8 7 12 12 C 1.39669 * 120.19949 * 359.97438 * 11 9 8 13 13 C 1.37824 * 119.91812 * 179.97438 * 12 11 9 14 14 C 1.38577 * 120.32495 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40246 * 0.02562 * 14 13 12 16 16 C 1.38833 * 120.07015 * 359.95359 * 15 14 13 17 17 O 1.35524 * 120.15899 * 180.02562 * 16 15 14 18 18 C 1.34815 * 116.99836 * 354.40032 * 17 16 15 19 19 H 1.08001 * 120.00398 * 5.05073 * 18 17 16 20 20 C 1.38698 * 119.99875 * 185.05655 * 18 17 16 21 21 N 1.31513 * 120.00392 * 180.02562 * 20 18 17 22 22 Si 1.86810 * 119.99910 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46894 * 90.00214 * 22 20 18 24 24 H 1.48500 * 109.47124 * 210.00188 * 22 20 18 25 25 H 1.48501 * 109.46922 * 330.00320 * 22 20 18 26 26 H 1.09005 * 109.47122 * 299.99874 * 1 2 3 27 27 H 1.08997 * 109.47087 * 59.99813 * 1 2 3 28 28 H 1.09002 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47308 * 239.99827 * 2 1 3 30 30 H 1.09006 * 109.46971 * 119.99930 * 2 1 3 31 31 H 1.09000 * 109.47602 * 59.99793 * 3 2 1 32 32 H 1.08997 * 109.47221 * 300.00105 * 3 2 1 33 33 H 1.08993 * 109.47107 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47032 * 300.00033 * 5 4 3 35 35 H 1.08997 * 109.46897 * 60.00105 * 5 4 3 36 36 H 0.96710 * 113.99677 * 300.00202 * 6 4 3 37 37 H 1.09005 * 109.47209 * 64.99512 * 7 4 3 38 38 H 1.09004 * 109.46821 * 304.99966 * 7 4 3 39 39 H 0.97005 * 119.99958 * 0.02562 * 8 7 4 40 40 H 1.07999 * 120.03826 * 0.02562 * 12 11 9 41 41 H 1.08000 * 119.84070 * 180.29534 * 13 12 11 42 42 H 1.07997 * 119.79613 * 180.02562 * 14 13 12 43 43 H 1.08003 * 119.96224 * 179.97438 * 15 14 13 44 44 H 0.96997 * 120.00489 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7214 -1.2502 6 8 4.0469 0.7687 1.1658 7 6 4.0801 2.8850 -0.0013 8 7 5.5400 2.8867 -0.1223 9 6 6.2130 4.0542 -0.1449 10 8 5.6083 5.1060 -0.0644 11 6 7.6833 4.0559 -0.2661 12 6 8.3821 2.8500 -0.3572 13 6 9.7556 2.8583 -0.4709 14 6 10.4484 4.0582 -0.4947 15 6 9.7714 5.2576 -0.4045 16 6 8.3879 5.2686 -0.2900 17 8 7.7213 6.4452 -0.2018 18 6 8.4661 7.5655 -0.1141 19 1 9.5412 7.5072 -0.1983 20 6 7.8516 8.7930 0.0842 21 7 8.5781 9.8860 0.1693 22 14 5.9919 8.8940 0.2292 23 1 5.5977 8.7462 1.6533 24 1 5.5264 10.2093 -0.2793 25 1 5.3733 7.8068 -0.5711 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8899 33 1 5.1694 0.7218 -1.2509 34 1 3.7162 -0.3063 -1.2502 35 1 3.7158 1.2354 -2.1399 36 1 3.7618 1.1721 1.9972 37 1 3.7920 3.3727 0.9301 38 1 3.6451 3.4237 -0.8431 39 1 6.0223 2.0476 -0.1868 40 1 7.8467 1.9122 -0.3395 41 1 10.2943 1.9252 -0.5460 42 1 11.5247 4.0548 -0.5845 43 1 10.3186 6.1886 -0.4234 44 1 8.1483 10.7445 0.3076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743772396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:04 Heat of formation + Delta-G solvation = -99.530418 kcal Electronic energy + Delta-G solvation = -25470.863339 eV Core-core repulsion = 21774.709223 eV Total energy + Delta-G solvation = -3696.154115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.96406 -39.13983 -37.85580 -36.50506 -34.47833 -34.06031 -32.44761 -31.44290 -30.32085 -29.18913 -27.32881 -26.39080 -25.22018 -23.18136 -21.90588 -21.15474 -20.50583 -20.00852 -18.03239 -17.88308 -16.80152 -16.40293 -15.92538 -15.35688 -15.07270 -14.88576 -14.59650 -14.25888 -14.12313 -14.01084 -13.72773 -13.59435 -13.54279 -12.75354 -12.60769 -12.59420 -12.34448 -12.16626 -12.12696 -12.02356 -11.98643 -11.48391 -11.37735 -11.25857 -10.95283 -10.83158 -10.72351 -10.71204 -10.12051 -10.04639 -9.61295 -9.04503 -8.88890 -8.72662 -8.36407 -7.46981 -6.46745 -4.11731 1.58778 2.19997 3.31174 3.37568 3.47415 3.58657 3.66156 4.05128 4.35624 4.39962 4.52818 4.55455 4.60009 4.74914 4.85402 4.93168 5.09564 5.16545 5.30812 5.34524 5.41124 5.45606 5.50681 5.56069 5.62504 5.70282 5.72989 5.76831 5.79152 5.85533 5.98850 6.04938 6.05096 6.09374 6.38876 6.56296 6.78156 6.84792 7.02064 7.15719 7.43141 7.49003 7.68477 7.95268 7.97998 8.86650 8.90664 9.52511 10.58489 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003906 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.167780 B = 7166.034258 C = 8837.105200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.143 4.143 4 C 0.121 3.879 5 C -0.141 4.141 6 O -0.555 6.555 7 C 0.099 3.901 8 N -0.734 5.734 9 C 0.559 3.441 10 O -0.521 6.521 11 C -0.226 4.226 12 C -0.040 4.040 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.201 3.799 17 O -0.166 6.166 18 C -0.396 4.396 19 H 0.108 0.892 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.901 3.099 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.239 1.239 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.377 0.623 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.138 0.862 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 -19.716 -0.825 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.182 4.182 4 C 0.080 3.920 5 C -0.199 4.199 6 O -0.361 6.361 7 C -0.026 4.026 8 N -0.391 5.391 9 C 0.349 3.651 10 O -0.397 6.397 11 C -0.231 4.231 12 C -0.059 4.059 13 C -0.240 4.240 14 C -0.069 4.069 15 C -0.246 4.246 16 C 0.143 3.857 17 O -0.066 6.066 18 C -0.471 4.471 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.506 5.506 22 Si 0.725 3.275 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.162 1.162 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.225 0.775 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.234 0.766 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.156 0.844 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.286 -18.968 -1.189 21.610 hybrid contribution -0.533 0.290 0.504 0.788 sum -10.819 -18.677 -0.685 21.595 Atomic orbital electron populations 1.21797 0.96045 1.01522 1.01758 1.21485 0.95328 0.96192 1.02758 1.22225 0.94619 0.98083 1.03248 1.21461 0.92729 0.90630 0.87185 1.21799 1.01992 1.00960 0.95100 1.86532 1.77177 1.56739 1.15644 1.21894 0.81918 0.96149 1.02624 1.45815 1.06424 1.08964 1.77847 1.18222 0.87325 0.83200 0.76324 1.90852 1.69606 1.30789 1.48466 1.18853 0.91984 0.91926 1.20305 1.20772 0.94295 0.95153 0.95665 1.20545 0.93869 0.97454 1.12114 1.20967 0.98978 0.92123 0.94873 1.21286 0.93813 0.99285 1.10259 1.19029 0.90148 0.85738 0.90740 1.83782 1.35081 1.11701 1.76050 1.20929 0.92795 0.82446 1.50968 0.87448 1.24490 1.00776 0.93496 0.94620 1.69634 1.36869 0.98595 1.45520 0.86196 0.83274 0.77957 0.80039 1.19982 1.21261 1.16168 0.92844 0.92820 0.92818 0.91690 0.91332 0.91352 0.90715 0.91792 0.91338 0.90899 0.77505 0.91631 0.91023 0.76614 0.86872 0.86986 0.86823 0.84422 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.87 5.44 -26.73 -0.15 -1.01 16 3 C -0.14 -1.13 4.45 -26.73 -0.12 -1.25 16 4 C 0.12 1.13 0.75 -90.62 -0.07 1.06 16 5 C -0.14 -1.26 8.26 37.16 0.31 -0.95 16 6 O -0.55 -5.28 12.25 -35.23 -0.43 -5.71 16 7 C 0.10 1.26 4.82 -4.04 -0.02 1.24 16 8 N -0.73 -11.00 5.14 -61.35 -0.32 -11.32 16 9 C 0.56 11.45 7.76 -12.47 -0.10 11.36 16 10 O -0.52 -13.04 15.17 -16.57 -0.25 -13.29 16 11 C -0.23 -4.65 5.89 -104.81 -0.62 -5.27 16 12 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 13 C -0.22 -3.48 10.02 -39.61 -0.40 -3.88 16 14 C -0.05 -0.88 10.03 -39.53 -0.40 -1.28 16 15 C -0.23 -4.85 9.16 -39.44 -0.36 -5.21 16 16 C 0.20 4.80 6.66 -38.60 -0.26 4.55 16 17 O -0.17 -4.61 6.67 -21.07 -0.14 -4.75 16 18 C -0.40 -11.42 9.95 30.90 0.31 -11.11 16 19 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 20 C 0.07 2.07 5.49 -17.52 -0.10 1.98 16 21 N -0.87 -25.44 13.96 55.48 0.77 -24.67 16 22 Si 0.90 23.34 28.62 -169.99 -4.86 18.47 16 23 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.24 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 30 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 6.57 -51.93 -0.34 0.25 16 34 H 0.07 0.55 6.43 -51.93 -0.33 0.21 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.38 2.68 9.05 45.56 0.41 3.09 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.40 5.06 5.02 -40.82 -0.20 4.86 16 40 H 0.11 1.45 6.40 -52.49 -0.34 1.11 16 41 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.14 3.04 5.64 -52.48 -0.30 2.74 16 44 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -33.50 359.48 -7.26 -40.76 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.48 Total: 6.53 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.97 Total: -11.44 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.46 Total: -35.99 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.82 Total: -23.75 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.86 Total: 18.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.50 -7.26 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743772396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.772 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds