Wall clock time and date at job start Fri Apr 10 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.84912 * 2 1 4 4 C 1.42892 * 114.00060 * 50.33484 * 3 2 1 5 5 C 1.50706 * 109.47488 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99660 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00094 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99594 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46928 * 90.00049 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47000 * 60.00482 * 13 11 9 15 15 H 1.48506 * 109.47330 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47185 * 300.00291 * 13 11 9 17 17 C 1.46501 * 120.00308 * 359.97438 * 7 5 4 18 18 C 1.50700 * 109.46743 * 269.99953 * 17 7 5 19 19 C 1.34513 * 125.78891 * 89.71900 * 18 17 7 20 20 C 1.41376 * 106.84199 * 179.88291 * 19 18 17 21 21 C 1.34516 * 106.84053 * 0.37321 * 20 19 18 22 22 O 1.34300 * 125.78900 * 270.01866 * 18 17 7 23 23 C 1.53785 * 113.61678 * 131.19730 * 2 1 3 24 24 C 1.53956 * 87.01717 * 89.22970 * 23 2 1 25 25 C 1.53781 * 87.11380 * 25.36220 * 24 23 2 26 26 H 1.08991 * 109.47452 * 69.66672 * 1 2 3 27 27 H 1.09002 * 109.47095 * 189.66936 * 1 2 3 28 28 H 1.08999 * 109.46816 * 309.66410 * 1 2 3 29 29 H 1.08997 * 109.47356 * 60.00127 * 4 3 2 30 30 H 1.09004 * 109.47505 * 300.00051 * 4 3 2 31 31 H 1.09004 * 109.47073 * 209.99877 * 8 7 5 32 32 H 1.09000 * 109.47212 * 329.99960 * 8 7 5 33 33 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46877 * 29.99967 * 17 7 5 35 35 H 1.09000 * 109.47251 * 150.00072 * 17 7 5 36 36 H 1.08003 * 126.57526 * 0.02562 * 19 18 17 37 37 H 1.08005 * 126.58338 * 180.16025 * 20 19 18 38 38 H 1.08002 * 125.78873 * 179.74611 * 21 20 19 39 39 H 1.08999 * 113.61180 * 203.74334 * 23 2 1 40 40 H 1.08998 * 113.61312 * 334.64769 * 23 2 1 41 41 H 1.09004 * 113.53331 * 270.80763 * 24 23 2 42 42 H 1.08999 * 113.74324 * 139.94885 * 24 23 2 43 43 H 1.09000 * 113.61238 * 220.09048 * 25 24 23 44 44 H 1.09000 * 113.61147 * 89.19004 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 1.5427 2.1760 1.0049 5 6 2.1956 3.5312 0.9129 6 8 3.0422 3.7405 0.0701 7 7 1.8394 4.5102 1.7679 8 6 2.4746 5.8274 1.6788 9 6 1.6841 6.7038 0.7417 10 1 0.7971 6.3184 0.2610 11 6 2.0927 7.9981 0.4989 12 7 3.1725 8.4677 1.0847 13 14 1.1132 9.0843 -0.6631 14 1 -0.2720 9.2358 -0.1497 15 1 1.7569 10.4195 -0.7534 16 1 1.0764 8.4609 -2.0105 17 6 0.8171 4.2573 2.7864 18 6 -0.5416 4.5954 2.2290 19 6 -1.3552 3.7493 1.5721 20 6 -2.5180 4.4788 1.2339 21 6 -2.3419 5.7294 1.6971 22 8 -1.1431 5.7942 2.2990 23 6 2.1461 -0.9281 1.0602 24 6 2.0951 -2.0419 -0.0013 25 6 2.1460 -0.9280 -1.0603 26 1 -0.3634 0.3571 -0.9635 27 1 -0.3633 -1.0131 0.1726 28 1 -0.3633 0.6559 0.7911 29 1 1.7310 1.7477 1.9893 30 1 0.4683 2.2798 0.8532 31 1 2.5023 6.2851 2.6677 32 1 3.4910 5.7159 1.3013 33 1 3.4601 9.3780 0.9135 34 1 0.8413 3.2057 3.0720 35 1 1.0152 4.8762 3.6615 36 1 -1.1588 2.7112 1.3482 37 1 -3.3806 4.1049 0.7023 38 1 -3.0452 6.5434 1.6009 39 1 3.1586 -0.6477 1.3505 40 1 1.4941 -1.1079 1.9150 41 1 1.1595 -2.6013 -0.0006 42 1 2.9738 -2.6869 -0.0033 43 1 1.4938 -1.1079 -1.9150 44 1 3.1585 -0.6477 -1.3508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746150507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:11 Heat of formation + Delta-G solvation = -33.137059 kcal Electronic energy + Delta-G solvation = -26351.342143 eV Core-core repulsion = 22658.067059 eV Total energy + Delta-G solvation = -3693.275083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15179 -40.04240 -38.83406 -35.79836 -35.09112 -32.86692 -32.43760 -30.10826 -29.24666 -28.71926 -26.77821 -25.83006 -25.23528 -23.45055 -22.41258 -21.38082 -20.44721 -18.90382 -18.65903 -17.47109 -17.03661 -16.63002 -16.09261 -15.64455 -15.43901 -15.29239 -15.00895 -14.54642 -14.44999 -13.96951 -13.80933 -13.16374 -12.91094 -12.62058 -12.49093 -12.40812 -12.37586 -12.25395 -12.09872 -11.86890 -11.59148 -11.41735 -11.21590 -11.14153 -10.89048 -10.82466 -10.56379 -10.31321 -10.14210 -9.65104 -9.56679 -9.38525 -8.90013 -8.38871 -8.19767 -7.79751 -5.99714 -4.02159 2.07923 2.88394 3.22749 3.35140 3.35981 3.39079 3.43951 3.52767 4.18835 4.41835 4.43554 4.50953 4.63443 4.66334 4.99756 5.04232 5.08781 5.17233 5.24734 5.30892 5.33626 5.36371 5.37642 5.52868 5.55938 5.57605 5.67046 5.70580 5.72279 5.82957 5.89646 6.07525 6.08280 6.16609 6.24353 6.43329 6.80338 6.92975 7.29591 7.39025 7.48707 7.57488 7.96562 8.25549 8.27655 8.91207 9.05104 9.61720 11.09095 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004601 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.541899 B = 6083.924825 C = 7078.033736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 O -0.342 6.342 4 C 0.035 3.965 5 C 0.510 3.490 6 O -0.511 6.511 7 N -0.594 5.594 8 C 0.247 3.753 9 C -0.516 4.516 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.897 5.897 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.186 3.814 18 C -0.003 4.003 19 C -0.222 4.222 20 C -0.221 4.221 21 C -0.039 4.039 22 O -0.149 6.149 23 C -0.162 4.162 24 C -0.139 4.139 25 C -0.120 4.120 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.196 0.804 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -17.697 3.958 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 O -0.259 6.259 4 C -0.045 4.045 5 C 0.296 3.704 6 O -0.386 6.386 7 N -0.328 5.328 8 C 0.128 3.872 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.536 5.536 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.062 3.938 18 C -0.056 4.056 19 C -0.242 4.242 20 C -0.240 4.240 21 C -0.108 4.108 22 O -0.043 6.043 23 C -0.200 4.200 24 C -0.176 4.176 25 C -0.157 4.157 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.213 0.787 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.610 -17.078 3.518 19.446 hybrid contribution -1.139 0.599 -0.676 1.453 sum -9.749 -16.479 2.842 19.357 Atomic orbital electron populations 1.22123 0.93982 1.02759 1.03210 1.23068 0.92936 0.82329 0.97551 1.88126 1.62673 1.21278 1.53869 1.22525 0.98685 0.90686 0.92555 1.19990 0.83465 0.85054 0.81916 1.90705 1.32007 1.81897 1.33945 1.48314 1.37945 1.14467 1.32070 1.19393 0.94348 0.75833 0.97598 1.21300 1.10744 0.96736 1.26677 0.92615 1.24867 0.95115 0.97792 0.96111 1.69909 1.23515 1.16702 1.43512 0.86609 0.80068 0.79481 0.81599 1.20282 1.21210 1.20287 1.19882 0.80892 1.01243 0.91811 1.23004 0.96295 0.83088 1.03194 1.21501 0.95813 1.00832 1.06062 1.21669 1.00574 0.94496 1.07239 1.23969 0.87161 0.99143 1.00493 1.84154 1.26951 1.32825 1.60368 1.23635 1.02301 0.96729 0.97342 1.22709 1.02258 0.96060 0.96610 1.23053 1.02397 0.93769 0.96497 0.91212 0.91086 0.91729 0.91211 0.90251 0.94678 0.93483 0.92752 0.88589 0.88393 0.84271 0.84067 0.78749 0.89146 0.91299 0.90072 0.90851 0.90820 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.80 37.16 0.33 -1.30 16 2 C 0.08 0.98 1.39 -89.81 -0.12 0.86 16 3 O -0.34 -5.81 9.83 -55.14 -0.54 -6.35 16 4 C 0.04 0.56 4.34 36.01 0.16 0.72 16 5 C 0.51 11.04 7.75 -10.99 -0.09 10.96 16 6 O -0.51 -13.71 16.08 -14.35 -0.23 -13.94 16 7 N -0.59 -12.57 2.44 -176.43 -0.43 -13.00 16 8 C 0.25 6.46 5.20 -5.19 -0.03 6.43 16 9 C -0.52 -14.82 9.39 -34.44 -0.32 -15.14 16 10 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 11 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 13 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 C 0.19 2.99 5.79 -5.19 -0.03 2.96 16 18 C 0.00 -0.05 6.90 -35.62 -0.25 -0.30 16 19 C -0.22 -3.36 9.98 -39.71 -0.40 -3.76 16 20 C -0.22 -3.19 10.91 -39.70 -0.43 -3.63 16 21 C -0.04 -0.60 12.09 29.42 0.36 -0.24 16 22 O -0.15 -2.81 10.65 5.71 0.06 -2.75 16 23 C -0.16 -1.62 7.33 -25.82 -0.19 -1.81 16 24 C -0.14 -1.17 7.74 -25.83 -0.20 -1.37 16 25 C -0.12 -1.28 7.50 -25.92 -0.19 -1.48 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.55 7.34 -51.93 -0.38 0.17 16 28 H 0.06 0.61 5.88 -51.93 -0.31 0.31 16 29 H 0.07 0.90 7.32 -51.93 -0.38 0.52 16 30 H 0.08 1.15 3.40 -51.93 -0.18 0.97 16 31 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 32 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.10 1.13 6.44 -51.93 -0.33 0.79 16 35 H 0.10 1.48 7.89 -51.93 -0.41 1.07 16 36 H 0.14 1.76 5.76 -52.48 -0.30 1.46 16 37 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.20 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.08 0.57 7.64 -51.93 -0.40 0.17 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -35.86 361.70 -7.89 -43.75 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.40 Total: 0.93 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.51 Total: -5.37 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.31 Total: -39.21 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.71 Total: -23.04 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.86 -7.89 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746150507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.610 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds