Wall clock time and date at job start Fri Apr 10 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.84912 * 2 1 4 4 C 1.42892 * 114.00060 * 50.33484 * 3 2 1 5 5 C 1.50706 * 109.47488 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99660 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00094 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99594 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46928 * 90.00049 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47000 * 60.00482 * 13 11 9 15 15 H 1.48506 * 109.47330 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47185 * 300.00291 * 13 11 9 17 17 C 1.46501 * 120.00308 * 359.97438 * 7 5 4 18 18 C 1.50700 * 109.46743 * 269.99953 * 17 7 5 19 19 C 1.34513 * 125.78891 * 89.71900 * 18 17 7 20 20 C 1.41376 * 106.84199 * 179.88291 * 19 18 17 21 21 C 1.34516 * 106.84053 * 0.37321 * 20 19 18 22 22 O 1.34300 * 125.78900 * 270.01866 * 18 17 7 23 23 C 1.53785 * 113.61678 * 131.19730 * 2 1 3 24 24 C 1.53956 * 87.01717 * 89.22970 * 23 2 1 25 25 C 1.53781 * 87.11380 * 25.36220 * 24 23 2 26 26 H 1.08991 * 109.47452 * 69.66672 * 1 2 3 27 27 H 1.09002 * 109.47095 * 189.66936 * 1 2 3 28 28 H 1.08999 * 109.46816 * 309.66410 * 1 2 3 29 29 H 1.08997 * 109.47356 * 60.00127 * 4 3 2 30 30 H 1.09004 * 109.47505 * 300.00051 * 4 3 2 31 31 H 1.09004 * 109.47073 * 209.99877 * 8 7 5 32 32 H 1.09000 * 109.47212 * 329.99960 * 8 7 5 33 33 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.46877 * 29.99967 * 17 7 5 35 35 H 1.09000 * 109.47251 * 150.00072 * 17 7 5 36 36 H 1.08003 * 126.57526 * 0.02562 * 19 18 17 37 37 H 1.08005 * 126.58338 * 180.16025 * 20 19 18 38 38 H 1.08002 * 125.78873 * 179.74611 * 21 20 19 39 39 H 1.08999 * 113.61180 * 203.74334 * 23 2 1 40 40 H 1.08998 * 113.61312 * 334.64769 * 23 2 1 41 41 H 1.09004 * 113.53331 * 270.80763 * 24 23 2 42 42 H 1.08999 * 113.74324 * 139.94885 * 24 23 2 43 43 H 1.09000 * 113.61238 * 220.09048 * 25 24 23 44 44 H 1.09000 * 113.61147 * 89.19004 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 1.5427 2.1760 1.0049 5 6 2.1956 3.5312 0.9129 6 8 3.0422 3.7405 0.0701 7 7 1.8394 4.5102 1.7679 8 6 2.4746 5.8274 1.6788 9 6 1.6841 6.7038 0.7417 10 1 0.7971 6.3184 0.2610 11 6 2.0927 7.9981 0.4989 12 7 3.1725 8.4677 1.0847 13 14 1.1132 9.0843 -0.6631 14 1 -0.2720 9.2358 -0.1497 15 1 1.7569 10.4195 -0.7534 16 1 1.0764 8.4609 -2.0105 17 6 0.8171 4.2573 2.7864 18 6 -0.5416 4.5954 2.2290 19 6 -1.3552 3.7493 1.5721 20 6 -2.5180 4.4788 1.2339 21 6 -2.3419 5.7294 1.6971 22 8 -1.1431 5.7942 2.2990 23 6 2.1461 -0.9281 1.0602 24 6 2.0951 -2.0419 -0.0013 25 6 2.1460 -0.9280 -1.0603 26 1 -0.3634 0.3571 -0.9635 27 1 -0.3633 -1.0131 0.1726 28 1 -0.3633 0.6559 0.7911 29 1 1.7310 1.7477 1.9893 30 1 0.4683 2.2798 0.8532 31 1 2.5023 6.2851 2.6677 32 1 3.4910 5.7159 1.3013 33 1 3.4601 9.3780 0.9135 34 1 0.8413 3.2057 3.0720 35 1 1.0152 4.8762 3.6615 36 1 -1.1588 2.7112 1.3482 37 1 -3.3806 4.1049 0.7023 38 1 -3.0452 6.5434 1.6009 39 1 3.1586 -0.6477 1.3505 40 1 1.4941 -1.1079 1.9150 41 1 1.1595 -2.6013 -0.0006 42 1 2.9738 -2.6869 -0.0033 43 1 1.4938 -1.1079 -1.9150 44 1 3.1585 -0.6477 -1.3508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746150507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:11 Heat of formation + Delta-G solvation = -55.679710 kcal Electronic energy + Delta-G solvation = -26352.319666 eV Core-core repulsion = 22658.067059 eV Total energy + Delta-G solvation = -3694.252606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.36979 -41.15428 -40.28144 -37.09509 -36.64315 -34.89544 -33.78115 -31.58458 -30.32837 -29.97531 -28.43123 -26.75618 -26.56246 -24.85423 -23.81655 -22.56561 -21.73450 -20.20912 -19.80383 -18.84191 -18.58795 -18.09974 -17.57817 -17.12387 -16.81557 -16.60127 -16.34316 -16.01726 -15.67079 -15.24487 -15.01080 -14.48556 -14.31202 -14.09476 -13.90730 -13.56728 -13.54901 -13.37735 -13.29435 -13.13571 -13.01807 -12.84022 -12.72446 -12.50120 -12.22497 -12.15235 -12.06326 -11.77977 -11.65788 -11.12160 -10.73576 -10.64328 -10.63016 -10.39344 -9.74002 -9.30495 -8.22503 -6.33287 0.82826 1.31465 1.36049 1.42751 1.63214 1.75767 2.04279 2.31420 2.37717 2.97673 3.08605 3.52597 3.65389 3.70346 3.85722 3.87293 3.92729 3.94402 4.08117 4.19031 4.25331 4.37927 4.44688 4.52368 4.63017 4.76540 4.88155 4.89461 4.93755 4.98069 5.00966 5.06343 5.09149 5.16320 5.18958 5.28230 5.31052 5.48197 5.51000 5.71066 5.76733 6.05634 6.24638 6.36463 6.61250 6.72757 7.25419 7.39653 8.85504 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004601 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.541899 B = 6083.924825 C = 7078.033736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 O -0.382 6.382 4 C 0.053 3.947 5 C 0.499 3.501 6 O -0.580 6.580 7 N -0.595 5.595 8 C 0.261 3.739 9 C -0.523 4.523 10 H 0.044 0.956 11 C 0.010 3.990 12 N -0.928 5.928 13 Si 0.957 3.043 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.282 1.282 17 C 0.181 3.819 18 C -0.037 4.037 19 C -0.212 4.212 20 C -0.222 4.222 21 C -0.054 4.054 22 O -0.186 6.186 23 C -0.160 4.160 24 C -0.123 4.123 25 C -0.131 4.131 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.001 0.999 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.222 0.778 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 -19.892 4.366 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 O -0.302 6.302 4 C -0.026 4.026 5 C 0.287 3.713 6 O -0.459 6.459 7 N -0.327 5.327 8 C 0.140 3.860 9 C -0.562 4.562 10 H 0.062 0.938 11 C -0.188 4.188 12 N -0.568 5.568 13 Si 0.782 3.218 14 H -0.185 1.185 15 H -0.201 1.201 16 H -0.208 1.208 17 C 0.059 3.941 18 C -0.088 4.088 19 C -0.232 4.232 20 C -0.241 4.241 21 C -0.122 4.122 22 O -0.082 6.082 23 C -0.198 4.198 24 C -0.160 4.160 25 C -0.169 4.169 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.164 0.836 35 H 0.119 0.881 36 H 0.184 0.816 37 H 0.189 0.811 38 H 0.239 0.761 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.698 -19.307 3.969 22.920 hybrid contribution -0.207 1.237 -0.814 1.495 sum -11.905 -18.070 3.155 21.868 Atomic orbital electron populations 1.22149 0.91954 1.04715 1.03033 1.23566 0.94582 0.80253 0.99100 1.88097 1.64045 1.23531 1.54493 1.22398 0.98540 0.87293 0.94383 1.21129 0.82547 0.87062 0.80513 1.90661 1.35091 1.83366 1.36787 1.48239 1.38726 1.12570 1.33189 1.18837 0.92353 0.78416 0.96386 1.21460 1.10409 0.97379 1.26968 0.93760 1.25719 0.96147 0.99268 0.97700 1.70020 1.24846 1.17186 1.44778 0.85632 0.79442 0.77826 0.78948 1.18532 1.20088 1.20808 1.20297 0.79314 1.04333 0.90199 1.23171 0.97004 0.83356 1.05293 1.21902 0.95347 1.01828 1.04111 1.22099 1.01259 0.93991 1.06737 1.24704 0.86652 1.00788 1.00041 1.84116 1.28454 1.34057 1.61546 1.23602 1.01678 0.96477 0.98015 1.22704 1.03865 0.95226 0.94176 1.23141 1.01323 0.94903 0.97496 0.92115 0.88269 0.90965 0.87366 0.88211 0.95232 0.98068 0.92506 0.83620 0.88075 0.81590 0.81059 0.76142 0.90797 0.89014 0.87635 0.90123 0.89947 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.80 71.98 0.63 -1.97 16 2 C 0.06 1.40 1.39 -10.27 -0.01 1.39 16 3 O -0.38 -12.79 9.83 -129.94 -1.28 -14.07 16 4 C 0.05 1.59 4.34 71.24 0.31 1.90 16 5 C 0.50 22.00 7.75 87.66 0.68 22.68 16 6 O -0.58 -32.83 16.08 16.00 0.26 -32.58 16 7 N -0.60 -25.66 2.44 -830.48 -2.03 -27.69 16 8 C 0.26 14.36 5.20 85.63 0.45 14.81 16 9 C -0.52 -31.07 9.39 25.60 0.24 -30.83 16 10 H 0.04 2.68 7.81 -2.91 -0.02 2.65 16 11 C 0.01 0.61 5.46 84.65 0.46 1.07 16 12 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 13 Si 0.96 46.74 29.54 68.60 2.03 48.76 16 14 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 16 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 17 C 0.18 5.59 5.79 85.63 0.50 6.09 16 18 C -0.04 -1.20 6.90 24.83 0.17 -1.03 16 19 C -0.21 -5.78 9.98 22.19 0.22 -5.56 16 20 C -0.22 -5.74 10.91 22.19 0.24 -5.50 16 21 C -0.05 -1.57 12.09 66.97 0.81 -0.76 16 22 O -0.19 -6.89 10.65 -2.48 -0.03 -6.91 16 23 C -0.16 -2.74 7.33 31.18 0.23 -2.52 16 24 C -0.12 -1.69 7.74 31.18 0.24 -1.45 16 25 C -0.13 -2.64 7.50 31.12 0.23 -2.41 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.03 7.34 -2.39 -0.02 1.01 16 28 H 0.07 1.03 5.88 -2.39 -0.01 1.02 16 29 H 0.11 2.40 7.32 -2.39 -0.02 2.38 16 30 H 0.10 2.57 3.40 -2.38 -0.01 2.56 16 31 H 0.03 1.63 7.89 -2.38 -0.02 1.61 16 32 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.15 2.93 6.44 -2.39 -0.02 2.92 16 35 H 0.10 3.01 7.89 -2.39 -0.02 3.00 16 36 H 0.17 3.45 5.76 -2.91 -0.02 3.43 16 37 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.22 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.15 8.10 -2.39 -0.02 1.13 16 41 H 0.11 0.98 7.64 -2.38 -0.02 0.96 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -83.87 361.70 5.64 -78.23 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.00 Total: 15.44 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.40 Total: -4.07 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -1.74 Total: -84.81 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -1.05 Total: -53.56 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -83.87 5.64 -78.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746150507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.548 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds