Wall clock time and date at job start Fri Apr 10 2020 21:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21322 * 119.99421 * 2 1 4 4 C 1.46621 * 120.00158 * 180.02562 * 2 1 3 5 5 C 1.38653 * 126.50956 * 275.55599 * 4 2 1 6 6 C 1.50693 * 125.81602 * 359.95349 * 5 4 2 7 7 N 1.34085 * 108.36155 * 180.22461 * 5 4 2 8 8 H 0.97006 * 125.34289 * 179.72470 * 7 5 4 9 9 C 1.37879 * 109.30048 * 359.60514 * 7 5 4 10 10 C 1.46669 * 125.81155 * 180.13035 * 9 7 5 11 11 O 1.21602 * 120.00353 * 174.82207 * 10 9 7 12 12 O 1.34870 * 119.99704 * 354.82478 * 10 9 7 13 13 C 1.45201 * 116.99646 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47084 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99870 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99497 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00403 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99528 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47645 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47355 * 120.00204 * 19 17 15 22 22 H 1.48504 * 109.47060 * 239.99792 * 19 17 15 23 23 C 1.36331 * 108.38049 * 0.39597 * 9 7 5 24 24 C 1.50694 * 126.51643 * 179.78600 * 23 9 7 25 25 C 1.53005 * 109.47289 * 125.09060 * 24 23 9 26 26 C 1.52997 * 109.47367 * 245.08973 * 24 23 9 27 27 H 1.08999 * 109.46992 * 275.08526 * 1 2 3 28 28 H 1.09000 * 109.47309 * 35.08853 * 1 2 3 29 29 H 1.09005 * 109.46667 * 155.09082 * 1 2 3 30 30 H 1.09000 * 109.47109 * 84.93193 * 6 5 4 31 31 H 1.09005 * 109.47402 * 324.93623 * 6 5 4 32 32 H 1.08998 * 109.47457 * 204.93021 * 6 5 4 33 33 H 1.08999 * 109.47029 * 299.99528 * 13 12 10 34 34 H 1.09002 * 109.47414 * 59.99428 * 13 12 10 35 35 H 1.08999 * 109.46880 * 299.99714 * 14 13 12 36 36 H 1.08994 * 109.46780 * 59.99428 * 14 13 12 37 37 H 0.97005 * 120.00400 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47050 * 5.09388 * 24 23 9 39 39 H 1.08993 * 109.47442 * 65.89248 * 25 24 23 40 40 H 1.09004 * 109.47135 * 185.89535 * 25 24 23 41 41 H 1.09000 * 109.47169 * 305.89401 * 25 24 23 42 42 H 1.09002 * 109.47163 * 64.63999 * 26 24 23 43 43 H 1.08997 * 109.47747 * 184.63953 * 26 24 23 44 44 H 1.08999 * 109.47515 * 304.63974 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2402 -1.2698 -0.0006 5 6 2.5592 -2.0386 1.1083 6 6 2.2109 -1.7120 2.5376 7 7 3.2356 -3.1191 0.6926 8 1 3.5813 -3.8201 1.2672 9 6 3.3602 -3.0786 -0.6799 10 6 4.0336 -4.0826 -1.5105 11 8 4.0004 -3.9904 -2.7226 12 8 4.6895 -5.1081 -0.9299 13 6 5.3331 -6.0636 -1.8137 14 6 6.0214 -7.1463 -0.9798 15 6 6.6889 -8.1383 -1.8971 16 1 6.6279 -8.0098 -2.9677 17 6 7.3773 -9.2101 -1.3694 18 7 7.4520 -9.3663 -0.0658 19 14 8.2041 -10.4402 -2.5064 20 1 7.9732 -10.0422 -3.9183 21 1 9.6631 -10.4658 -2.2311 22 1 7.6327 -11.7910 -2.2736 23 6 2.7562 -1.9436 -1.1331 24 6 2.6564 -1.4923 -2.5674 25 6 1.1884 -1.2514 -2.9254 26 6 3.4454 -0.1943 -2.7498 27 1 -0.3633 0.0911 1.0236 28 1 -0.3634 0.8409 -0.5907 29 1 -0.3633 -0.9321 -0.4329 30 1 1.2034 -2.0659 2.7560 31 1 2.2570 -0.6330 2.6854 32 1 2.9203 -2.2009 3.2053 33 1 4.5845 -6.5228 -2.4593 34 1 6.0749 -5.5503 -2.4256 35 1 6.7701 -6.6867 -0.3345 36 1 5.2799 -7.6596 -0.3677 37 1 7.9367 -10.1201 0.3054 38 1 3.0678 -2.2624 -3.2200 39 1 0.8063 -0.4111 -2.3460 40 1 1.1059 -1.0269 -3.9889 41 1 0.6073 -2.1447 -2.6965 42 1 4.5042 -0.3850 -2.5748 43 1 3.3061 0.1761 -3.7654 44 1 3.0882 0.5510 -2.0392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753501212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:26 Heat of formation + Delta-G solvation = -111.311312 kcal Electronic energy + Delta-G solvation = -25324.184952 eV Core-core repulsion = 21627.519979 eV Total energy + Delta-G solvation = -3696.664973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90756 -39.65020 -38.90764 -36.40527 -35.42547 -33.41231 -32.26071 -30.98830 -30.36196 -29.78626 -27.43976 -27.06354 -25.20070 -23.53596 -22.42377 -21.41166 -20.83124 -19.59563 -18.57965 -18.11314 -16.63631 -16.15169 -15.96837 -15.78224 -15.46167 -15.26690 -14.85354 -14.61380 -14.56006 -14.33380 -13.92249 -13.48573 -13.23266 -13.13422 -12.84995 -12.72584 -12.57303 -12.50760 -12.41523 -12.29022 -11.90675 -11.31652 -11.26181 -11.17034 -11.12297 -11.03946 -10.83415 -10.68018 -10.06363 -9.98008 -9.73895 -9.65292 -9.34745 -8.97822 -8.50612 -8.31197 -6.16370 -4.20698 1.24873 1.70626 2.12449 2.80391 3.09506 3.21089 3.24075 3.31942 3.37245 4.06590 4.35173 4.40762 4.70972 4.75828 4.91135 4.98816 5.09549 5.12413 5.14834 5.20744 5.21916 5.32800 5.42840 5.51734 5.55868 5.64633 5.68047 5.77254 5.84383 5.96830 6.02333 6.02757 6.07085 6.28507 6.38208 6.41275 6.55400 6.65093 6.92344 7.16363 7.33509 7.48133 7.53702 7.80391 8.09259 8.18317 8.84955 9.44241 10.95222 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.002873 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.322106 B = 9742.377886 C =10539.584762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.442 3.558 3 O -0.453 6.453 4 C -0.259 4.259 5 C 0.099 3.901 6 C -0.097 4.097 7 N -0.510 5.510 8 H 0.430 0.570 9 C -0.032 4.032 10 C 0.529 3.471 11 O -0.501 6.501 12 O -0.362 6.362 13 C 0.078 3.922 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.020 4.020 24 C -0.055 4.055 25 C -0.141 4.141 26 C -0.144 4.144 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 17.733 3.684 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.317 3.683 3 O -0.326 6.326 4 C -0.267 4.267 5 C -0.024 4.024 6 C -0.154 4.154 7 N -0.105 5.105 8 H 0.269 0.731 9 C -0.142 4.142 10 C 0.374 3.626 11 O -0.391 6.391 12 O -0.279 6.279 13 C 0.005 3.995 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.079 0.921 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.027 4.027 24 C -0.074 4.074 25 C -0.199 4.199 26 C -0.202 4.202 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.877 17.987 3.494 23.602 hybrid contribution 0.727 -1.342 -0.280 1.552 sum -14.151 16.645 3.214 22.082 Atomic orbital electron populations 1.22324 0.93914 1.04907 1.04526 1.21608 0.91014 0.86527 0.69155 1.90552 1.72482 1.34348 1.35205 1.19734 1.13384 1.00726 0.92842 1.20664 0.97909 0.88070 0.95714 1.20536 1.02879 1.03437 0.88560 1.41601 1.42074 1.19811 1.06980 0.73078 1.18879 1.13234 0.99888 0.82181 1.19788 0.76465 0.80201 0.86175 1.90793 1.59178 1.74860 1.14230 1.86579 1.62774 1.35287 1.43222 1.23692 0.95172 0.87847 0.92748 1.19180 0.95519 0.90817 0.95705 1.21008 1.33613 1.08711 0.93088 0.92112 1.24982 0.96114 0.97843 0.95211 1.69973 1.41932 1.30336 1.10662 0.86407 0.79144 0.80835 0.80896 1.19524 1.20795 1.20805 1.19492 0.96689 0.91650 0.94904 1.20058 0.96769 0.99429 0.91122 1.21864 0.95299 1.01362 1.01340 1.21850 1.00252 0.96465 1.01604 0.88656 0.89477 0.89453 0.89642 0.89705 0.90429 0.92048 0.92049 0.95413 0.95437 0.92732 0.87098 0.93104 0.92108 0.92361 0.92664 0.92402 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 9.12 36.01 0.33 -1.02 16 2 C 0.44 4.71 4.64 -30.93 -0.14 4.57 16 3 O -0.45 -6.17 16.47 5.52 0.09 -6.08 16 4 C -0.26 -3.06 5.60 -105.11 -0.59 -3.65 16 5 C 0.10 1.02 7.21 -81.46 -0.59 0.43 16 6 C -0.10 -0.61 10.20 36.00 0.37 -0.24 16 7 N -0.51 -6.01 6.00 -5.57 -0.03 -6.04 16 8 H 0.43 4.34 8.96 -40.82 -0.37 3.97 16 9 C -0.03 -0.48 7.01 -82.43 -0.58 -1.06 16 10 C 0.53 9.53 7.93 34.13 0.27 9.80 16 11 O -0.50 -9.84 14.18 -19.34 -0.27 -10.12 16 12 O -0.36 -7.07 10.23 -40.96 -0.42 -7.49 16 13 C 0.08 1.70 5.42 37.16 0.20 1.90 16 14 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 15 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.02 -0.28 4.89 -104.06 -0.51 -0.79 16 24 C -0.06 -0.73 3.06 -91.77 -0.28 -1.01 16 25 C -0.14 -1.48 8.92 37.16 0.33 -1.15 16 26 C -0.14 -1.82 9.15 37.16 0.34 -1.48 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.53 8.00 -51.93 -0.42 0.12 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.11 1.69 5.46 -51.93 -0.28 1.41 16 39 H 0.05 0.48 5.44 -51.93 -0.28 0.20 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.80 5.91 -51.93 -0.31 0.49 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -32.76 369.67 -7.44 -40.21 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.69 Total: -0.41 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.41 Total: -6.53 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.70 Total: -31.31 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.60 Total: -23.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.76 -7.44 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753501212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.106 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds