Wall clock time and date at job start Fri Apr 10 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21322 * 119.99421 * 2 1 4 4 C 1.46621 * 120.00158 * 180.02562 * 2 1 3 5 5 C 1.38653 * 126.50956 * 275.55599 * 4 2 1 6 6 C 1.50693 * 125.81602 * 359.95349 * 5 4 2 7 7 N 1.34085 * 108.36155 * 180.22461 * 5 4 2 8 8 H 0.97006 * 125.34289 * 179.72470 * 7 5 4 9 9 C 1.37879 * 109.30048 * 359.60514 * 7 5 4 10 10 C 1.46669 * 125.81155 * 180.13035 * 9 7 5 11 11 O 1.21602 * 120.00353 * 174.82207 * 10 9 7 12 12 O 1.34870 * 119.99704 * 354.82478 * 10 9 7 13 13 C 1.45201 * 116.99646 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47084 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99870 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99497 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00403 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99528 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47645 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47355 * 120.00204 * 19 17 15 22 22 H 1.48504 * 109.47060 * 239.99792 * 19 17 15 23 23 C 1.36331 * 108.38049 * 0.39597 * 9 7 5 24 24 C 1.50694 * 126.51643 * 179.78600 * 23 9 7 25 25 C 1.53005 * 109.47289 * 125.09060 * 24 23 9 26 26 C 1.52997 * 109.47367 * 245.08973 * 24 23 9 27 27 H 1.08999 * 109.46992 * 275.08526 * 1 2 3 28 28 H 1.09000 * 109.47309 * 35.08853 * 1 2 3 29 29 H 1.09005 * 109.46667 * 155.09082 * 1 2 3 30 30 H 1.09000 * 109.47109 * 84.93193 * 6 5 4 31 31 H 1.09005 * 109.47402 * 324.93623 * 6 5 4 32 32 H 1.08998 * 109.47457 * 204.93021 * 6 5 4 33 33 H 1.08999 * 109.47029 * 299.99528 * 13 12 10 34 34 H 1.09002 * 109.47414 * 59.99428 * 13 12 10 35 35 H 1.08999 * 109.46880 * 299.99714 * 14 13 12 36 36 H 1.08994 * 109.46780 * 59.99428 * 14 13 12 37 37 H 0.97005 * 120.00400 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47050 * 5.09388 * 24 23 9 39 39 H 1.08993 * 109.47442 * 65.89248 * 25 24 23 40 40 H 1.09004 * 109.47135 * 185.89535 * 25 24 23 41 41 H 1.09000 * 109.47169 * 305.89401 * 25 24 23 42 42 H 1.09002 * 109.47163 * 64.63999 * 26 24 23 43 43 H 1.08997 * 109.47747 * 184.63953 * 26 24 23 44 44 H 1.08999 * 109.47515 * 304.63974 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2402 -1.2698 -0.0006 5 6 2.5592 -2.0386 1.1083 6 6 2.2109 -1.7120 2.5376 7 7 3.2356 -3.1191 0.6926 8 1 3.5813 -3.8201 1.2672 9 6 3.3602 -3.0786 -0.6799 10 6 4.0336 -4.0826 -1.5105 11 8 4.0004 -3.9904 -2.7226 12 8 4.6895 -5.1081 -0.9299 13 6 5.3331 -6.0636 -1.8137 14 6 6.0214 -7.1463 -0.9798 15 6 6.6889 -8.1383 -1.8971 16 1 6.6279 -8.0098 -2.9677 17 6 7.3773 -9.2101 -1.3694 18 7 7.4520 -9.3663 -0.0658 19 14 8.2041 -10.4402 -2.5064 20 1 7.9732 -10.0422 -3.9183 21 1 9.6631 -10.4658 -2.2311 22 1 7.6327 -11.7910 -2.2736 23 6 2.7562 -1.9436 -1.1331 24 6 2.6564 -1.4923 -2.5674 25 6 1.1884 -1.2514 -2.9254 26 6 3.4454 -0.1943 -2.7498 27 1 -0.3633 0.0911 1.0236 28 1 -0.3634 0.8409 -0.5907 29 1 -0.3633 -0.9321 -0.4329 30 1 1.2034 -2.0659 2.7560 31 1 2.2570 -0.6330 2.6854 32 1 2.9203 -2.2009 3.2053 33 1 4.5845 -6.5228 -2.4593 34 1 6.0749 -5.5503 -2.4256 35 1 6.7701 -6.6867 -0.3345 36 1 5.2799 -7.6596 -0.3677 37 1 7.9367 -10.1201 0.3054 38 1 3.0678 -2.2624 -3.2200 39 1 0.8063 -0.4111 -2.3460 40 1 1.1059 -1.0269 -3.9889 41 1 0.6073 -2.1447 -2.6965 42 1 4.5042 -0.3850 -2.5748 43 1 3.3061 0.1761 -3.7654 44 1 3.0882 0.5510 -2.0392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753501212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:25 Heat of formation + Delta-G solvation = -130.011562 kcal Electronic energy + Delta-G solvation = -25324.995856 eV Core-core repulsion = 21627.519979 eV Total energy + Delta-G solvation = -3697.475877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.91470 -41.07409 -39.83543 -37.86372 -36.53535 -35.47734 -33.16253 -32.30089 -31.81868 -30.51770 -28.49162 -28.00002 -26.99018 -24.79720 -23.31250 -23.01967 -22.26519 -20.73147 -19.59039 -19.27416 -18.49018 -17.67325 -17.62258 -16.77708 -16.53543 -16.37720 -16.18054 -15.78020 -15.55654 -15.28145 -14.91458 -14.88465 -14.52346 -14.37735 -14.14673 -13.82893 -13.46756 -13.29336 -13.15566 -13.13886 -13.07881 -13.02801 -12.65609 -12.64538 -12.62366 -12.31494 -12.14630 -12.10776 -11.74353 -11.55307 -11.47249 -11.13638 -10.83158 -10.64967 -9.95718 -9.29441 -8.30584 -6.43467 0.08735 0.88417 1.20410 1.39242 1.39800 1.51959 1.59608 1.89482 1.98306 2.37940 3.04300 3.26610 3.61691 3.64796 3.90953 3.95232 4.17594 4.17972 4.23219 4.25187 4.29390 4.49355 4.59770 4.63220 4.67110 4.70720 4.72748 4.75239 4.83313 4.90338 4.99728 5.04049 5.10942 5.16902 5.23317 5.33103 5.35085 5.41617 5.45169 5.48798 5.69413 5.73723 6.02895 6.27650 6.54793 6.62310 6.70271 7.26544 8.82207 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.002873 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.322106 B = 9742.377886 C =10539.584762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.447 3.553 3 O -0.488 6.488 4 C -0.279 4.279 5 C 0.127 3.873 6 C -0.098 4.098 7 N -0.508 5.508 8 H 0.436 0.564 9 C -0.070 4.070 10 C 0.527 3.473 11 O -0.525 6.525 12 O -0.366 6.366 13 C 0.093 3.907 14 C 0.033 3.967 15 C -0.550 4.550 16 H 0.064 0.936 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.018 4.018 24 C -0.061 4.061 25 C -0.136 4.136 26 C -0.138 4.138 27 H 0.123 0.877 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.006 0.994 36 H 0.009 0.991 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.987 18.472 4.212 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.325 3.675 3 O -0.364 6.364 4 C -0.286 4.286 5 C 0.002 3.998 6 C -0.155 4.155 7 N -0.103 5.103 8 H 0.277 0.723 9 C -0.179 4.179 10 C 0.374 3.626 11 O -0.416 6.416 12 O -0.283 6.283 13 C 0.020 3.980 14 C -0.004 4.004 15 C -0.588 4.588 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.025 4.025 24 C -0.080 4.080 25 C -0.193 4.193 26 C -0.196 4.196 27 H 0.141 0.859 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.485 18.725 4.024 25.270 hybrid contribution 1.166 -1.472 -0.345 1.909 sum -15.318 17.253 3.679 23.363 Atomic orbital electron populations 1.22360 0.90455 1.05802 1.06559 1.22056 0.92646 0.85194 0.67640 1.90551 1.73515 1.35171 1.37129 1.20041 1.14339 1.01719 0.92511 1.21406 0.94763 0.86253 0.97349 1.20777 1.04851 1.04178 0.85705 1.41633 1.42208 1.20579 1.05915 0.72334 1.18559 1.15710 1.00143 0.83464 1.20265 0.75938 0.79907 0.86460 1.90775 1.60234 1.75339 1.15259 1.86553 1.63259 1.35710 1.42772 1.23210 0.95109 0.87595 0.92039 1.18973 0.94594 0.91475 0.95368 1.21390 1.34202 1.09586 0.93596 0.91737 1.25937 0.96578 0.99811 0.96838 1.70084 1.42656 1.31239 1.12531 0.85284 0.78049 0.78129 0.78903 1.18676 1.20080 1.19948 1.19735 0.95708 0.91283 0.95796 1.20090 0.98591 0.98710 0.90613 1.21831 0.93194 1.01944 1.02324 1.21798 0.99071 0.96173 1.02529 0.85880 0.88550 0.88553 0.86765 0.88940 0.88989 0.91889 0.92238 0.97565 0.97290 0.92292 0.89618 0.91773 0.90982 0.92207 0.94356 0.90747 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 9.12 71.24 0.65 -1.33 16 2 C 0.45 8.57 4.64 27.88 0.13 8.70 16 3 O -0.49 -12.62 16.47 -3.16 -0.05 -12.67 16 4 C -0.28 -6.18 5.60 -20.18 -0.11 -6.29 16 5 C 0.13 2.35 7.21 42.31 0.31 2.65 16 6 C -0.10 -0.90 10.20 71.23 0.73 -0.17 16 7 N -0.51 -11.63 6.00 -171.54 -1.03 -12.66 16 8 H 0.44 8.60 8.96 -92.70 -0.83 7.77 16 9 C -0.07 -2.13 7.01 39.95 0.28 -1.85 16 10 C 0.53 19.75 7.93 70.02 0.56 20.30 16 11 O -0.53 -21.55 14.18 19.50 0.28 -21.28 16 12 O -0.37 -14.87 10.23 -57.84 -0.59 -15.46 16 13 C 0.09 4.23 5.42 71.98 0.39 4.62 16 14 C 0.03 1.76 5.35 29.85 0.16 1.92 16 15 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 16 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.01 0.42 5.46 84.66 0.46 0.88 16 18 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 19 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C -0.02 -0.48 4.89 -19.50 -0.10 -0.58 16 24 C -0.06 -1.62 3.06 -11.54 -0.04 -1.66 16 25 C -0.14 -2.68 8.92 71.98 0.64 -2.04 16 26 C -0.14 -3.51 9.15 71.98 0.66 -2.85 16 27 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.84 8.00 -2.38 -0.02 0.82 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.80 8.06 -2.38 -0.02 0.78 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 38 H 0.09 2.73 5.46 -2.39 -0.01 2.71 16 39 H 0.06 1.08 5.44 -2.39 -0.01 1.07 16 40 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.51 5.91 -2.39 -0.01 1.49 16 Total: -1.00 -72.77 369.67 6.05 -66.73 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.19 Total: 12.97 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.95 Total: -8.51 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -0.75 Total: -67.21 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.37 Total: -49.41 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -72.77 6.05 -66.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753501212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.286 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds