Wall clock time and date at job start Fri Apr 10 2020 21:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47416 * 2 1 4 4 C 1.52995 * 109.47079 * 239.99729 * 2 1 3 5 5 C 1.53005 * 109.46986 * 119.99911 * 2 1 3 6 6 H 1.08996 * 109.47389 * 305.91138 * 5 2 1 7 7 O 1.42909 * 109.47073 * 185.91424 * 5 2 1 8 8 C 1.50703 * 109.47020 * 65.91549 * 5 2 1 9 9 O 1.21279 * 119.99969 * 290.81298 * 8 5 2 10 10 N 1.34780 * 120.00049 * 110.81350 * 8 5 2 11 11 C 1.46497 * 119.99882 * 185.09790 * 10 8 5 12 12 C 1.50706 * 109.46951 * 180.02562 * 11 10 8 13 13 C 1.38298 * 119.92955 * 90.00030 * 12 11 10 14 14 C 1.38101 * 120.06403 * 180.02562 * 13 12 11 15 15 C 1.38876 * 119.93579 * 359.97438 * 14 13 12 16 16 O 1.35754 * 120.07311 * 180.02562 * 15 14 13 17 17 C 1.34829 * 116.99537 * 5.79975 * 16 15 14 18 18 H 1.08002 * 120.00144 * 354.91586 * 17 16 15 19 19 C 1.38659 * 119.99490 * 174.92293 * 17 16 15 20 20 N 1.31553 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99683 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47189 * 89.99792 * 21 19 17 23 23 H 1.48493 * 109.47203 * 209.99452 * 21 19 17 24 24 H 1.48504 * 109.47149 * 329.99627 * 21 19 17 25 25 C 1.38883 * 119.85710 * 0.27124 * 15 14 13 26 26 C 1.38098 * 119.93364 * 359.49542 * 25 15 14 27 27 H 1.09007 * 109.46494 * 304.28185 * 1 2 3 28 28 H 1.08994 * 109.47011 * 64.27913 * 1 2 3 29 29 H 1.08996 * 109.47287 * 184.28344 * 1 2 3 30 30 H 1.08998 * 109.46885 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46724 * 300.00266 * 3 2 1 32 32 H 1.09007 * 109.46915 * 60.00032 * 3 2 1 33 33 H 1.08997 * 109.47502 * 300.00027 * 4 2 1 34 34 H 1.09005 * 109.46717 * 60.00350 * 4 2 1 35 35 H 1.09004 * 109.47231 * 180.02562 * 4 2 1 36 36 H 0.96699 * 113.99325 * 300.00313 * 7 5 2 37 37 H 0.97003 * 119.99299 * 5.09784 * 10 8 5 38 38 H 1.09001 * 109.46998 * 60.00248 * 11 10 8 39 39 H 1.08998 * 109.47150 * 299.99985 * 11 10 8 40 40 H 1.07990 * 119.97078 * 359.97438 * 13 12 11 41 41 H 1.08005 * 120.03188 * 179.97438 * 14 13 12 42 42 H 0.97000 * 119.99797 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.03141 * 179.73336 * 25 15 14 44 44 H 1.07998 * 119.96447 * 180.23281 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.5928 -0.2722 2.1361 7 8 3.4623 -0.6022 1.3208 8 6 1.6607 -2.1781 1.1783 9 8 0.4980 -2.5076 1.2793 10 7 2.6138 -3.1147 1.0024 11 6 2.2364 -4.5187 0.8215 12 6 3.4785 -5.3542 0.6474 13 6 4.1009 -5.9040 1.7533 14 6 5.2396 -6.6697 1.5970 15 6 5.7592 -6.8878 0.3277 16 8 6.8781 -7.6404 0.1708 17 6 7.3675 -8.2462 1.2715 18 1 6.9211 -8.0558 2.2363 19 6 8.4442 -9.1133 1.1646 20 7 8.9877 -9.3455 -0.0107 21 14 9.1228 -9.9520 2.6896 22 1 8.4213 -11.2443 2.8975 23 1 10.5761 -10.2007 2.5124 24 1 8.9106 -9.0778 3.8711 25 6 5.1347 -6.3300 -0.7803 26 6 3.9936 -5.5693 -0.6180 27 1 -0.3632 0.5789 0.8492 28 1 -0.3633 0.4460 -0.9258 29 1 -0.3633 -1.0247 0.0768 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 3.9272 -0.9815 0.5625 37 1 3.5495 -2.8591 0.9957 38 1 1.6067 -4.6145 -0.0629 39 1 1.6872 -4.8631 1.6978 40 1 3.6967 -5.7337 2.7401 41 1 5.7255 -7.0984 2.4611 42 1 9.7407 -9.9524 -0.0854 43 1 5.5389 -6.4943 -1.7683 44 1 3.5055 -5.1385 -1.4796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764973494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:28 Heat of formation + Delta-G solvation = -125.988946 kcal Electronic energy + Delta-G solvation = -25053.029004 eV Core-core repulsion = 21355.727560 eV Total energy + Delta-G solvation = -3697.301443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58726 -40.78371 -38.83892 -38.28105 -36.25932 -35.29197 -34.26385 -31.85395 -31.45153 -28.72718 -28.26764 -27.91006 -27.47263 -25.95844 -23.65466 -22.29565 -21.78440 -20.27636 -19.88707 -19.38877 -18.79865 -17.41682 -17.13455 -16.59086 -16.37079 -16.17349 -15.90562 -15.66268 -15.52462 -15.26182 -14.87333 -14.64861 -14.40612 -14.33089 -14.07173 -13.72989 -13.63670 -13.29815 -13.09416 -13.04222 -12.93980 -12.74511 -12.58797 -12.50202 -12.36773 -12.26637 -12.11695 -11.98906 -11.74209 -11.34837 -11.21312 -10.83497 -10.43626 -10.08671 -9.81731 -9.01144 -8.49045 -6.17109 0.53442 0.57039 1.35666 1.43712 1.52422 1.53120 2.16496 2.19547 2.83830 3.15293 3.25155 3.48742 3.61631 3.64469 3.82443 3.90570 4.01779 4.11362 4.16414 4.42265 4.44259 4.50674 4.55739 4.72184 4.76835 4.79952 4.82744 4.89707 5.02130 5.03099 5.04489 5.13051 5.13638 5.25483 5.27260 5.37522 5.40110 5.51395 5.54361 5.68801 5.73958 6.00915 6.15028 6.32754 6.65295 6.96033 7.16668 7.74996 8.73736 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.028435 B = 0.002541 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.478608 B =11014.897441 C =11054.681750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.152 4.152 5 C 0.109 3.891 6 H 0.129 0.871 7 O -0.553 6.553 8 C 0.489 3.511 9 O -0.572 6.572 10 N -0.712 5.712 11 C 0.184 3.816 12 C -0.182 4.182 13 C -0.047 4.047 14 C -0.244 4.244 15 C 0.123 3.877 16 O -0.228 6.228 17 C -0.414 4.414 18 H 0.103 0.897 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.203 4.203 26 C -0.041 4.041 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.387 0.613 37 H 0.410 0.590 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.135 0.865 41 H 0.119 0.881 42 H 0.273 0.727 43 H 0.116 0.884 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.395 18.684 0.693 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.189 4.189 4 C -0.209 4.209 5 C 0.047 3.953 6 H 0.146 0.854 7 O -0.360 6.360 8 C 0.276 3.724 9 O -0.452 6.452 10 N -0.365 5.365 11 C 0.061 3.939 12 C -0.183 4.183 13 C -0.066 4.066 14 C -0.263 4.263 15 C 0.072 3.928 16 O -0.134 6.134 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.222 4.222 26 C -0.060 4.060 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.238 0.762 37 H 0.247 0.753 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.153 0.847 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.042 18.567 1.014 23.301 hybrid contribution 1.108 -1.089 -0.008 1.553 sum -12.934 17.478 1.006 21.767 Atomic orbital electron populations 1.21967 0.93578 1.02757 1.02355 1.21055 0.96862 0.97026 0.93613 1.21756 1.01775 0.92935 1.02419 1.21998 1.01844 0.99758 0.97331 1.22259 0.82311 0.89445 1.01297 0.85381 1.86649 1.16749 1.83280 1.49359 1.21794 0.85503 0.89840 0.75264 1.90674 1.20106 1.83038 1.51362 1.46206 1.10652 1.07162 1.72469 1.19887 0.92988 0.79104 1.01900 1.19482 1.00031 1.05711 0.93124 1.20924 0.92839 0.93777 0.99055 1.21233 1.01229 1.07341 0.96531 1.19999 0.86659 0.91092 0.95041 1.83947 1.36090 1.56691 1.36699 1.21819 1.15392 1.25084 0.86677 0.88006 1.26558 0.96169 0.96981 1.02153 1.70171 1.23798 1.35879 1.25765 0.84610 0.77595 0.78438 0.75756 1.18938 1.19611 1.17624 1.20461 0.99520 1.05590 0.96655 1.20870 0.92891 0.94771 0.97433 0.92216 0.91512 0.92557 0.91605 0.91451 0.92332 0.93692 0.90865 0.91037 0.76250 0.75301 0.90586 0.91551 0.84724 0.86362 0.91775 0.86543 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.26 71.98 0.59 -1.77 16 2 C -0.08 -1.17 0.63 -52.18 -0.03 -1.20 16 3 C -0.13 -1.48 8.27 71.98 0.59 -0.89 16 4 C -0.15 -1.98 7.94 71.98 0.57 -1.40 16 5 C 0.11 1.80 2.83 29.85 0.08 1.88 16 6 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 7 O -0.55 -8.34 11.74 -148.98 -1.75 -10.09 16 8 C 0.49 10.55 5.49 87.66 0.48 11.03 16 9 O -0.57 -16.27 14.77 -3.03 -0.04 -16.31 16 10 N -0.71 -14.23 5.46 -466.78 -2.55 -16.78 16 11 C 0.18 4.24 5.80 85.64 0.50 4.73 16 12 C -0.18 -5.03 5.25 -19.83 -0.10 -5.14 16 13 C -0.05 -1.50 9.69 22.25 0.22 -1.29 16 14 C -0.24 -9.97 9.17 22.39 0.21 -9.76 16 15 C 0.12 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -13.22 9.76 -22.78 -0.22 -13.44 16 17 C -0.41 -23.38 9.49 67.92 0.64 -22.73 16 18 H 0.10 5.27 5.21 -2.91 -0.02 5.26 16 19 C -0.02 -1.15 5.49 84.84 0.47 -0.68 16 20 N -0.92 -55.17 13.67 21.61 0.30 -54.88 16 21 Si 1.02 41.87 29.55 68.60 2.03 43.89 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 25 C -0.20 -7.88 9.99 22.39 0.22 -7.65 16 26 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.19 5.78 -2.39 -0.01 1.18 16 30 H 0.06 0.74 7.54 -2.39 -0.02 0.72 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.04 0.73 7.05 -2.39 -0.02 0.72 16 34 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.73 6.91 -2.39 -0.02 0.71 16 36 H 0.39 3.94 6.51 -74.06 -0.48 3.46 16 37 H 0.41 7.13 6.69 -92.71 -0.62 6.51 16 38 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 39 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 40 H 0.13 3.59 8.06 -2.92 -0.02 3.56 16 41 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 42 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 43 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 44 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -70.42 359.75 2.49 -67.93 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.07 Total: 29.62 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 4.81 Total: -29.95 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -2.25 Total: -71.65 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -2.02 Total: -39.84 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -70.42 2.49 -67.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764973494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.059 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds