Wall clock time and date at job start Fri Apr 10 2020 21:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 C 1.53005 * 109.46606 * 119.99631 * 2 1 3 5 5 C 1.53004 * 109.47042 * 184.34362 * 4 2 1 6 6 O 1.42896 * 109.47252 * 304.34082 * 4 2 1 7 7 C 1.50698 * 109.47306 * 64.34343 * 4 2 1 8 8 O 1.21277 * 120.00099 * 24.82765 * 7 4 2 9 9 N 1.34773 * 119.99939 * 204.82558 * 7 4 2 10 10 C 1.46499 * 120.00065 * 179.97438 * 9 7 4 11 11 C 1.50704 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.38304 * 119.92921 * 269.72404 * 11 10 9 13 13 C 1.38096 * 120.06789 * 179.72442 * 12 11 10 14 14 C 1.38876 * 119.93105 * 0.57334 * 13 12 11 15 15 O 1.35755 * 120.07362 * 179.68140 * 14 13 12 16 16 C 1.34833 * 117.00291 * 185.43034 * 15 14 13 17 17 H 1.07995 * 119.99567 * 354.89836 * 16 15 14 18 18 C 1.38648 * 119.99870 * 174.90031 * 16 15 14 19 19 N 1.31560 * 120.00132 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00041 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46673 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47243 * 119.99411 * 20 18 16 23 23 H 1.48498 * 109.46903 * 239.99984 * 20 18 16 24 24 C 1.38882 * 119.86063 * 359.70346 * 14 13 12 25 25 C 1.38101 * 119.93230 * 359.97438 * 24 14 13 26 26 H 1.08996 * 109.47346 * 300.00677 * 1 2 3 27 27 H 1.09008 * 109.46474 * 60.00359 * 1 2 3 28 28 H 1.08991 * 109.47504 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47346 * 239.99323 * 2 1 3 30 30 H 1.09007 * 109.47170 * 185.54002 * 3 2 1 31 31 H 1.08999 * 109.46954 * 305.53567 * 3 2 1 32 32 H 1.08997 * 109.47555 * 65.54225 * 3 2 1 33 33 H 1.09000 * 109.47087 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.47110 * 300.00077 * 5 4 2 35 35 H 1.09001 * 109.46995 * 59.99552 * 5 4 2 36 36 H 0.96695 * 114.00318 * 59.99775 * 6 4 2 37 37 H 0.97007 * 120.00153 * 359.97438 * 9 7 4 38 38 H 1.08995 * 109.47308 * 299.99791 * 10 9 7 39 39 H 1.08997 * 109.46917 * 60.00184 * 10 9 7 40 40 H 1.07997 * 119.96341 * 359.97438 * 12 11 10 41 41 H 1.08005 * 120.03444 * 180.27261 * 13 12 11 42 42 H 0.96995 * 120.00025 * 180.02562 * 19 18 16 43 43 H 1.08007 * 120.03452 * 179.97438 * 24 14 13 44 44 H 1.07998 * 119.96658 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 3.5660 -0.6273 1.3053 6 8 1.4820 -0.1090 2.4138 7 6 1.6273 -2.1697 1.1968 8 8 1.4068 -2.6990 0.1282 9 7 1.5033 -2.8768 2.3375 10 6 1.1016 -4.2847 2.2865 11 6 1.0373 -4.8398 3.6861 12 6 2.1572 -5.4246 4.2487 13 6 2.1031 -5.9290 5.5331 14 6 0.9191 -5.8593 6.2556 15 8 0.8608 -6.3601 7.5160 16 6 -0.3453 -6.3621 8.1188 17 1 -1.1927 -5.9022 7.6324 18 6 -0.4974 -6.9546 9.3630 19 7 0.5349 -7.5152 9.9553 20 14 -2.1685 -6.9580 10.1979 21 1 -3.1568 -6.2690 9.3297 22 1 -2.6036 -8.3588 10.4288 23 1 -2.0733 -6.2483 11.4988 24 6 -0.2054 -5.2765 5.6857 25 6 -0.1430 -4.7679 4.4033 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1256 1.4440 -0.0992 31 1 1.5980 1.9841 -0.8363 32 1 1.7601 1.9269 0.9354 33 1 3.9292 -1.1407 2.1956 34 1 3.9915 -1.0943 0.4171 35 1 3.8644 0.4203 1.3432 36 1 0.5159 -0.1317 2.4456 37 1 1.6800 -2.4535 3.1922 38 1 0.1207 -4.3660 1.8184 39 1 1.8299 -4.8494 1.7044 40 1 3.0762 -5.4832 3.6844 41 1 2.9792 -6.3817 5.9735 42 1 0.4284 -7.9300 10.8256 43 1 -1.1278 -5.2212 6.2449 44 1 -1.0172 -4.3150 3.9595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771311389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:47 Heat of formation + Delta-G solvation = -104.529394 kcal Electronic energy + Delta-G solvation = -24958.837156 eV Core-core repulsion = 21262.466269 eV Total energy + Delta-G solvation = -3696.370887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63810 -39.17540 -37.73422 -36.81217 -34.79107 -33.83939 -32.38381 -30.97991 -30.30334 -29.77577 -27.53510 -26.03107 -25.06511 -24.04121 -22.08115 -21.30304 -20.65103 -19.83169 -18.34877 -18.07761 -17.06597 -16.70306 -15.97038 -15.46686 -15.07028 -14.75933 -14.69843 -14.51144 -14.03783 -13.73159 -13.66574 -13.40586 -13.30287 -12.81505 -12.74338 -12.67591 -12.58649 -12.51256 -12.17109 -12.09657 -11.91608 -11.70090 -11.42563 -11.29927 -11.09884 -10.99362 -10.81595 -10.71708 -10.60095 -10.48846 -9.53056 -9.44380 -9.01296 -8.92511 -8.30910 -7.34552 -6.54604 -4.13497 2.03731 2.10805 2.49708 3.05632 3.08506 3.14185 3.24683 3.86033 3.88977 4.31037 4.42685 4.54254 4.65906 4.88991 4.99863 5.10782 5.14092 5.19657 5.22424 5.35669 5.38168 5.43830 5.50732 5.55978 5.62938 5.63734 5.73707 5.76674 5.86497 5.88691 6.01110 6.07522 6.09953 6.32111 6.46088 6.57604 6.77939 6.93394 7.10883 7.14679 7.24617 7.33164 7.57963 7.69535 7.90166 8.16934 8.90834 9.58787 10.62988 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.002558 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.315654 B =10942.493914 C =11249.542805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.123 3.877 5 C -0.140 4.140 6 O -0.547 6.547 7 C 0.485 3.515 8 O -0.542 6.542 9 N -0.712 5.712 10 C 0.177 3.823 11 C -0.215 4.215 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.161 3.839 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.236 4.236 25 C -0.050 4.050 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.379 0.621 37 H 0.407 0.593 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.271 0.729 43 H 0.128 0.872 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 14.150 -15.864 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.127 4.127 3 C -0.202 4.202 4 C 0.079 3.921 5 C -0.197 4.197 6 O -0.354 6.354 7 C 0.270 3.730 8 O -0.420 6.420 9 N -0.364 5.364 10 C 0.055 3.945 11 C -0.217 4.217 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.256 4.256 25 C -0.069 4.069 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.228 0.772 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.124 13.621 -16.095 21.191 hybrid contribution -1.420 -0.031 0.767 1.614 sum 0.703 13.590 -15.328 20.497 Atomic orbital electron populations 1.21901 0.94826 1.02573 1.02042 1.21547 0.96585 0.96779 0.97799 1.21846 1.01079 0.95053 1.02268 1.21475 0.96036 0.87794 0.86810 1.21798 0.90644 1.03972 1.03282 1.86569 1.26011 1.80811 1.42008 1.21394 0.77720 0.89487 0.84401 1.90688 1.50176 1.71852 1.29292 1.46401 1.68325 1.12318 1.09331 1.20008 1.00043 0.80116 0.94352 1.19190 0.95421 1.10653 0.96401 1.20523 0.96790 0.96019 0.93964 1.20211 0.97323 1.08867 0.94992 1.19439 0.93331 0.91148 0.85487 1.83980 1.33199 1.69325 1.21062 1.21405 0.85464 1.38467 1.01576 0.88862 1.25326 0.99563 0.95625 0.95978 1.70045 1.29874 1.33844 1.15561 0.85623 0.79977 0.78493 0.79211 1.19034 1.20050 1.20055 1.21158 0.99898 1.07533 0.96988 1.20621 0.96146 0.96578 0.93573 0.92679 0.91919 0.91886 0.89240 0.92341 0.92556 0.91825 0.91250 0.90565 0.90293 0.77155 0.75720 0.91627 0.91549 0.87003 0.86351 0.91908 0.85398 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.56 37.16 0.32 -1.01 16 2 C -0.11 -0.96 2.02 -90.62 -0.18 -1.15 16 3 C -0.15 -1.06 8.49 37.16 0.32 -0.74 16 4 C 0.12 1.20 0.76 -91.77 -0.07 1.13 16 5 C -0.14 -1.24 8.36 37.16 0.31 -0.93 16 6 O -0.55 -5.11 11.62 -35.23 -0.41 -5.52 16 7 C 0.49 6.04 5.93 -10.99 -0.07 5.97 16 8 O -0.54 -8.38 15.24 5.56 0.08 -8.29 16 9 N -0.71 -8.79 5.46 -61.48 -0.34 -9.13 16 10 C 0.18 2.44 5.80 -5.19 -0.03 2.41 16 11 C -0.22 -3.42 5.25 -104.57 -0.55 -3.97 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.19 -3.91 9.99 -39.40 -0.39 -4.30 16 14 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 15 O -0.17 -4.78 9.76 0.02 0.00 -4.78 16 16 C -0.39 -10.65 9.49 30.88 0.29 -10.36 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 20 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 26 H 0.05 0.39 6.72 -51.93 -0.35 0.04 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.66 6.81 -51.93 -0.35 0.30 16 29 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 30 H 0.06 0.39 6.69 -51.93 -0.35 0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.61 6.48 -51.93 -0.34 0.27 16 36 H 0.38 2.78 7.20 45.56 0.33 3.11 16 37 H 0.41 4.82 7.91 -40.82 -0.32 4.50 16 38 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -30.71 361.20 -6.70 -37.41 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.68 Total: 10.06 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.54 Total: -16.28 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.42 Total: -32.98 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.32 Total: -18.60 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.71 -6.70 -37.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771311389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.115 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds