Wall clock time and date at job start Fri Apr 10 2020 21:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 C 1.53005 * 109.46606 * 119.99631 * 2 1 3 5 5 C 1.53004 * 109.47042 * 184.34362 * 4 2 1 6 6 O 1.42896 * 109.47252 * 304.34082 * 4 2 1 7 7 C 1.50698 * 109.47306 * 64.34343 * 4 2 1 8 8 O 1.21277 * 120.00099 * 24.82765 * 7 4 2 9 9 N 1.34773 * 119.99939 * 204.82558 * 7 4 2 10 10 C 1.46499 * 120.00065 * 179.97438 * 9 7 4 11 11 C 1.50704 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.38304 * 119.92921 * 269.72404 * 11 10 9 13 13 C 1.38096 * 120.06789 * 179.72442 * 12 11 10 14 14 C 1.38876 * 119.93105 * 0.57334 * 13 12 11 15 15 O 1.35755 * 120.07362 * 179.68140 * 14 13 12 16 16 C 1.34833 * 117.00291 * 185.43034 * 15 14 13 17 17 H 1.07995 * 119.99567 * 354.89836 * 16 15 14 18 18 C 1.38648 * 119.99870 * 174.90031 * 16 15 14 19 19 N 1.31560 * 120.00132 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00041 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46673 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47243 * 119.99411 * 20 18 16 23 23 H 1.48498 * 109.46903 * 239.99984 * 20 18 16 24 24 C 1.38882 * 119.86063 * 359.70346 * 14 13 12 25 25 C 1.38101 * 119.93230 * 359.97438 * 24 14 13 26 26 H 1.08996 * 109.47346 * 300.00677 * 1 2 3 27 27 H 1.09008 * 109.46474 * 60.00359 * 1 2 3 28 28 H 1.08991 * 109.47504 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47346 * 239.99323 * 2 1 3 30 30 H 1.09007 * 109.47170 * 185.54002 * 3 2 1 31 31 H 1.08999 * 109.46954 * 305.53567 * 3 2 1 32 32 H 1.08997 * 109.47555 * 65.54225 * 3 2 1 33 33 H 1.09000 * 109.47087 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.47110 * 300.00077 * 5 4 2 35 35 H 1.09001 * 109.46995 * 59.99552 * 5 4 2 36 36 H 0.96695 * 114.00318 * 59.99775 * 6 4 2 37 37 H 0.97007 * 120.00153 * 359.97438 * 9 7 4 38 38 H 1.08995 * 109.47308 * 299.99791 * 10 9 7 39 39 H 1.08997 * 109.46917 * 60.00184 * 10 9 7 40 40 H 1.07997 * 119.96341 * 359.97438 * 12 11 10 41 41 H 1.08005 * 120.03444 * 180.27261 * 13 12 11 42 42 H 0.96995 * 120.00025 * 180.02562 * 19 18 16 43 43 H 1.08007 * 120.03452 * 179.97438 * 24 14 13 44 44 H 1.07998 * 119.96658 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 3.5660 -0.6273 1.3053 6 8 1.4820 -0.1090 2.4138 7 6 1.6273 -2.1697 1.1968 8 8 1.4068 -2.6990 0.1282 9 7 1.5033 -2.8768 2.3375 10 6 1.1016 -4.2847 2.2865 11 6 1.0373 -4.8398 3.6861 12 6 2.1572 -5.4246 4.2487 13 6 2.1031 -5.9290 5.5331 14 6 0.9191 -5.8593 6.2556 15 8 0.8608 -6.3601 7.5160 16 6 -0.3453 -6.3621 8.1188 17 1 -1.1927 -5.9022 7.6324 18 6 -0.4974 -6.9546 9.3630 19 7 0.5349 -7.5152 9.9553 20 14 -2.1685 -6.9580 10.1979 21 1 -3.1568 -6.2690 9.3297 22 1 -2.6036 -8.3588 10.4288 23 1 -2.0733 -6.2483 11.4988 24 6 -0.2054 -5.2765 5.6857 25 6 -0.1430 -4.7679 4.4033 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1256 1.4440 -0.0992 31 1 1.5980 1.9841 -0.8363 32 1 1.7601 1.9269 0.9354 33 1 3.9292 -1.1407 2.1956 34 1 3.9915 -1.0943 0.4171 35 1 3.8644 0.4203 1.3432 36 1 0.5159 -0.1317 2.4456 37 1 1.6800 -2.4535 3.1922 38 1 0.1207 -4.3660 1.8184 39 1 1.8299 -4.8494 1.7044 40 1 3.0762 -5.4832 3.6844 41 1 2.9792 -6.3817 5.9735 42 1 0.4284 -7.9300 10.8256 43 1 -1.1278 -5.2212 6.2449 44 1 -1.0172 -4.3150 3.9595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771311389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:46 Heat of formation + Delta-G solvation = -126.103901 kcal Electronic energy + Delta-G solvation = -24959.772697 eV Core-core repulsion = 21262.466269 eV Total energy + Delta-G solvation = -3697.306428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58040 -40.79834 -38.85265 -38.21958 -35.88246 -34.70143 -34.25417 -31.94746 -31.80245 -31.01642 -28.25172 -27.65260 -26.47192 -24.95660 -23.66530 -22.40331 -21.95828 -20.63967 -19.89503 -19.30517 -18.78791 -17.51743 -16.99990 -16.64191 -16.39549 -16.22550 -15.96852 -15.56960 -15.56062 -15.28939 -14.97439 -14.55884 -14.39818 -14.07953 -13.98086 -13.63462 -13.41978 -13.34843 -13.23982 -13.14810 -13.05212 -12.78289 -12.69176 -12.55683 -12.36216 -12.27520 -12.09290 -11.99672 -11.74597 -11.33286 -11.21274 -10.84998 -10.46530 -10.10029 -9.82706 -9.01798 -8.49153 -6.17405 0.52530 0.56127 1.35750 1.43050 1.51210 1.53708 2.16358 2.19200 2.83321 3.13588 3.16094 3.47621 3.57544 3.71686 3.85152 3.89409 4.00665 4.15497 4.20959 4.41117 4.45373 4.53869 4.54859 4.69559 4.74929 4.78364 4.80208 4.83468 4.97421 4.99187 5.02175 5.10285 5.13268 5.23198 5.24769 5.33309 5.42678 5.47503 5.50903 5.67721 5.72735 6.00700 6.14084 6.38263 6.66180 6.95799 7.17433 7.74822 8.73940 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.002558 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.315654 B =10942.493914 C =11249.542805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.129 3.871 5 C -0.142 4.142 6 O -0.549 6.549 7 C 0.488 3.512 8 O -0.572 6.572 9 N -0.708 5.708 10 C 0.182 3.818 11 C -0.183 4.183 12 C -0.045 4.045 13 C -0.204 4.204 14 C 0.122 3.878 15 O -0.229 6.229 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.250 1.250 22 H -0.270 1.270 23 H -0.269 1.269 24 C -0.243 4.243 25 C -0.045 4.045 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.388 0.612 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 16.292 -18.097 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.085 3.915 5 C -0.199 4.199 6 O -0.357 6.357 7 C 0.274 3.726 8 O -0.451 6.451 9 N -0.360 5.360 10 C 0.059 3.941 11 C -0.184 4.184 12 C -0.063 4.063 13 C -0.224 4.224 14 C 0.071 3.929 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.838 3.162 21 H -0.173 1.173 22 H -0.195 1.195 23 H -0.194 1.194 24 C -0.262 4.262 25 C -0.063 4.063 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.239 0.761 37 H 0.248 0.752 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.164 0.836 41 H 0.133 0.867 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.365 15.802 -18.380 24.277 hybrid contribution -1.073 -0.559 1.078 1.621 sum 0.292 15.244 -17.302 23.061 Atomic orbital electron populations 1.21890 0.94584 1.01478 1.03243 1.21534 0.96817 0.97556 0.96658 1.21815 1.01534 0.93767 1.02661 1.21438 0.96633 0.85942 0.87445 1.21851 0.89857 1.04950 1.03232 1.86571 1.26959 1.80461 1.41742 1.21873 0.76705 0.90436 0.83620 1.90683 1.51424 1.72688 1.30338 1.46253 1.68286 1.11659 1.09762 1.19916 1.00795 0.80980 0.92369 1.19495 0.94385 1.07643 0.96911 1.20873 0.98489 0.94416 0.92567 1.20442 0.96454 1.09263 0.96208 1.19993 0.95360 0.92381 0.85121 1.83951 1.33750 1.72372 1.23422 1.21874 0.85986 1.38825 1.02195 0.87868 1.26591 1.03884 0.95041 0.96479 1.70185 1.32629 1.36453 1.16440 0.84527 0.74838 0.78777 0.78075 1.17340 1.19482 1.19364 1.21247 0.98897 1.07707 0.98349 1.20930 0.97806 0.95522 0.92088 0.91158 0.91145 0.94009 0.90627 0.91700 0.91678 0.91788 0.91590 0.90366 0.88887 0.76124 0.75155 0.91022 0.90985 0.83633 0.86687 0.91788 0.86125 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.56 71.98 0.62 -1.68 16 2 C -0.11 -1.65 2.02 -10.79 -0.02 -1.67 16 3 C -0.14 -1.65 8.49 71.98 0.61 -1.04 16 4 C 0.13 2.20 0.76 -11.54 -0.01 2.19 16 5 C -0.14 -2.15 8.36 71.98 0.60 -1.54 16 6 O -0.55 -8.64 11.62 -148.98 -1.73 -10.37 16 7 C 0.49 10.90 5.93 87.66 0.52 11.42 16 8 O -0.57 -16.50 15.24 -3.02 -0.05 -16.54 16 9 N -0.71 -15.24 5.46 -466.80 -2.55 -17.79 16 10 C 0.18 4.36 5.80 85.63 0.50 4.86 16 11 C -0.18 -5.25 5.25 -19.83 -0.10 -5.35 16 12 C -0.05 -1.40 9.69 22.25 0.22 -1.19 16 13 C -0.20 -8.23 9.99 22.39 0.22 -8.01 16 14 C 0.12 5.83 6.65 22.58 0.15 5.98 16 15 O -0.23 -13.39 9.76 -22.83 -0.22 -13.61 16 16 C -0.41 -23.39 9.49 67.92 0.64 -22.75 16 17 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 18 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 19 N -0.92 -55.52 13.67 21.61 0.30 -55.22 16 20 Si 1.02 41.89 29.55 68.60 2.03 43.92 16 21 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 C -0.24 -9.94 9.17 22.39 0.21 -9.74 16 25 C -0.05 -1.42 9.69 22.25 0.22 -1.21 16 26 H 0.07 0.80 6.72 -2.39 -0.02 0.79 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.04 0.80 6.81 -2.39 -0.02 0.78 16 29 H 0.08 1.40 7.71 -2.39 -0.02 1.39 16 30 H 0.06 0.68 6.69 -2.38 -0.02 0.67 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.15 6.48 -2.39 -0.02 1.14 16 36 H 0.39 4.52 7.20 -74.06 -0.53 3.99 16 37 H 0.41 8.38 7.91 -92.70 -0.73 7.65 16 38 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 39 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 44 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -70.50 361.20 2.37 -68.13 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.23 Total: 31.98 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 4.83 Total: -30.50 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.25 Total: -73.01 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -2.00 Total: -40.52 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -70.50 2.37 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771311389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.973 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds