Wall clock time and date at job start Fri Apr 10 2020 21:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38383 * 119.39805 * 2 1 4 4 C 1.38313 * 119.45983 * 180.29620 * 3 2 1 5 5 C 1.50703 * 120.82596 * 179.70922 * 4 3 2 6 6 C 1.40052 * 118.34709 * 359.43805 * 4 3 2 7 7 C 1.47381 * 120.60533 * 180.25173 * 6 4 3 8 8 O 1.21510 * 120.00339 * 89.99964 * 7 6 4 9 9 O 1.34753 * 119.99875 * 269.99998 * 7 6 4 10 10 C 1.45202 * 116.99771 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46919 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47331 * 300.00167 * 11 10 9 13 13 C 1.52996 * 109.47094 * 60.00521 * 11 10 9 14 14 C 1.53000 * 109.46827 * 180.02562 * 11 10 9 15 15 C 1.50706 * 109.47090 * 179.97438 * 14 11 10 16 16 H 1.08000 * 119.99525 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00186 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00174 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47167 * 59.99980 * 19 17 15 21 21 H 1.48498 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47101 * 299.99862 * 19 17 15 23 23 C 1.40335 * 118.79369 * 0.27245 * 6 4 3 24 24 O 1.35416 * 119.80923 * 180.02562 * 23 6 4 25 25 N 1.31869 * 119.40231 * 179.72257 * 2 1 3 26 26 H 1.08995 * 109.47747 * 270.28113 * 1 2 3 27 27 H 1.09002 * 109.47204 * 30.28023 * 1 2 3 28 28 H 1.09005 * 109.47209 * 150.27259 * 1 2 3 29 29 H 1.07996 * 120.26736 * 0.03118 * 3 2 1 30 30 H 1.09002 * 109.47152 * 269.72174 * 5 4 3 31 31 H 1.09001 * 109.46980 * 149.72274 * 5 4 3 32 32 H 1.09004 * 109.47113 * 29.72255 * 5 4 3 33 33 H 1.08995 * 109.47645 * 300.00115 * 10 9 7 34 34 H 1.09001 * 109.47105 * 60.00321 * 10 9 7 35 35 H 1.09002 * 109.46704 * 60.00019 * 12 11 10 36 36 H 1.08997 * 109.47194 * 179.97438 * 12 11 10 37 37 H 1.09007 * 109.46954 * 300.00296 * 12 11 10 38 38 H 1.09004 * 109.47378 * 59.99928 * 13 11 10 39 39 H 1.08997 * 109.47267 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.47072 * 300.00061 * 13 11 10 41 41 H 1.08995 * 109.47435 * 299.99960 * 14 11 10 42 42 H 1.09001 * 109.47406 * 60.00222 * 14 11 10 43 43 H 0.97001 * 119.99979 * 180.02562 * 18 17 15 44 44 H 0.96699 * 114.00102 * 89.99491 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1862 1.2056 0.0000 4 6 3.5693 1.2071 -0.0062 5 6 4.3402 2.5021 -0.0130 6 6 4.2357 -0.0247 -0.0003 7 6 5.7084 -0.0811 -0.0009 8 8 6.3163 -0.0989 1.0511 9 8 6.3809 -0.1130 -1.1682 10 6 7.8300 -0.1675 -1.0928 11 6 8.4134 -0.1980 -2.5069 12 6 7.8943 -1.4328 -3.2464 13 6 7.9892 1.0639 -3.2609 14 6 9.9402 -0.2561 -2.4274 15 6 10.5149 -0.2868 -3.8203 16 1 9.8569 -0.2663 -4.6764 17 6 11.8806 -0.3408 -4.0015 18 7 12.6819 -0.3652 -2.9589 19 14 12.5929 -0.3781 -5.7279 20 1 12.1822 0.8473 -6.4594 21 1 14.0748 -0.4346 -5.6508 22 1 12.0881 -1.5759 -6.4460 23 6 3.4756 -1.2043 0.0059 24 8 4.0987 -2.4066 0.0122 25 7 2.1543 -1.1488 0.0056 26 1 -0.3634 0.0050 1.0276 27 1 -0.3634 0.8875 -0.5182 28 1 -0.3634 -0.8925 -0.5096 29 1 1.6408 2.1377 0.0005 30 1 4.5257 2.8092 -1.0423 31 1 5.2909 2.3616 0.5012 32 1 3.7614 3.2721 0.4972 33 1 8.1998 0.7119 -0.5656 34 1 8.1323 -1.0668 -0.5560 35 1 6.8065 -1.3917 -3.3029 36 1 8.3096 -1.4542 -4.2539 37 1 8.1966 -2.3318 -2.7091 38 1 8.3591 1.9436 -2.7341 39 1 8.4052 1.0424 -4.2681 40 1 6.9014 1.1049 -3.3174 41 1 10.3104 0.6233 -1.9005 42 1 10.2422 -1.1553 -1.8904 43 1 13.6427 -0.4029 -3.0865 44 1 4.2797 -2.7512 0.8974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798877381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:16 Heat of formation + Delta-G solvation = -114.644386 kcal Electronic energy + Delta-G solvation = -25494.176695 eV Core-core repulsion = 21797.367188 eV Total energy + Delta-G solvation = -3696.809506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25230 -39.82513 -37.66174 -37.19975 -35.38147 -34.57367 -32.34826 -32.13004 -29.08308 -27.96165 -27.22005 -26.40364 -26.32964 -23.98420 -23.02460 -22.15467 -20.80282 -18.73370 -18.39490 -17.87440 -17.60836 -16.62789 -16.16508 -15.91991 -15.69705 -14.80503 -14.56822 -14.41335 -13.83278 -13.67798 -13.57848 -13.35474 -13.29216 -13.08215 -12.77438 -12.43093 -12.34882 -12.31790 -12.11605 -12.04906 -11.94055 -11.26762 -10.95037 -10.88125 -10.78309 -10.59202 -10.35464 -10.31982 -10.23071 -9.92873 -9.78537 -9.74062 -9.23726 -9.15107 -8.95387 -8.36592 -6.00984 -4.02123 0.41370 0.75039 2.09562 2.74887 3.01092 3.32918 3.34995 3.37715 3.39944 4.10486 4.16367 4.44173 4.60661 4.63273 4.84471 4.95865 5.04259 5.17920 5.21699 5.26009 5.34558 5.46139 5.46952 5.49552 5.58393 5.69833 5.75807 5.80833 6.00270 6.10339 6.18464 6.37723 6.52891 6.56625 6.71725 6.75486 7.10364 7.12823 7.12887 7.13738 7.51471 7.59982 7.71967 7.79366 7.97463 8.39340 9.01865 9.60927 11.10660 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.002914 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.051179 B = 9606.971177 C = 9689.245519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.171 3.829 3 C -0.187 4.187 4 C 0.019 3.981 5 C -0.129 4.129 6 C -0.181 4.181 7 C 0.522 3.478 8 O -0.502 6.502 9 O -0.336 6.336 10 C 0.077 3.923 11 C -0.058 4.058 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.035 3.965 15 C -0.510 4.510 16 H 0.061 0.939 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.365 3.635 24 O -0.472 6.472 25 N -0.505 5.505 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.539 3.953 7.524 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.034 3.966 3 C -0.207 4.207 4 C 0.011 3.989 5 C -0.185 4.185 6 C -0.185 4.185 7 C 0.364 3.636 8 O -0.391 6.391 9 O -0.251 6.251 10 C 0.004 3.996 11 C -0.058 4.058 12 C -0.183 4.183 13 C -0.183 4.183 14 C -0.002 4.002 15 C -0.548 4.548 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C 0.185 3.815 24 O -0.280 6.280 25 N -0.225 5.225 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -23.541 3.174 7.266 24.840 hybrid contribution 1.280 0.479 -0.272 1.393 sum -22.261 3.652 6.994 23.618 Atomic orbital electron populations 1.20813 0.87931 1.04109 1.03575 1.21234 0.97100 0.87027 0.91275 1.21771 0.93326 0.99774 1.05819 1.20273 0.93820 0.93996 0.90765 1.21006 1.00319 0.92948 1.04214 1.20182 0.91728 0.94695 1.11928 1.20607 0.87666 0.72466 0.82861 1.90873 1.69758 1.45483 1.32968 1.86672 1.24045 1.82124 1.32292 1.23604 0.73347 1.02014 1.00621 1.20821 0.98790 0.96164 0.90018 1.21716 0.98653 0.96579 1.01382 1.21717 0.98749 0.96407 1.01442 1.19125 0.85730 0.97462 0.97848 1.21111 0.91286 1.50313 0.92096 0.92124 1.25006 0.97325 0.95480 0.96664 1.69953 1.03558 1.50748 1.29268 0.86674 0.77901 0.78609 0.84928 1.20272 1.21382 1.20243 1.18950 0.86348 0.84223 0.91975 1.84738 1.76591 1.32516 1.34192 1.67091 1.08727 1.30380 1.16334 0.89785 0.90056 0.89970 0.83469 0.88988 0.90563 0.89816 0.91471 0.91378 0.94189 0.91554 0.93684 0.93755 0.91493 0.94284 0.96337 0.96297 0.92953 0.73320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 36.00 0.37 -0.24 16 2 C 0.17 1.63 6.78 -82.53 -0.56 1.07 16 3 C -0.19 -1.60 9.41 -39.50 -0.37 -1.98 16 4 C 0.02 0.21 5.95 -103.91 -0.62 -0.41 16 5 C -0.13 -1.17 9.69 36.01 0.35 -0.82 16 6 C -0.18 -2.49 5.78 -104.71 -0.61 -3.09 16 7 C 0.52 8.51 5.56 34.45 0.19 8.71 16 8 O -0.50 -9.13 16.90 -19.27 -0.33 -9.45 16 9 O -0.34 -5.90 8.89 -40.64 -0.36 -6.26 16 10 C 0.08 1.45 4.33 37.16 0.16 1.61 16 11 C -0.06 -1.18 0.61 -154.51 -0.09 -1.28 16 12 C -0.13 -2.49 8.08 37.16 0.30 -2.19 16 13 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 14 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 15 C -0.51 -13.77 7.65 -34.44 -0.26 -14.04 16 16 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.36 4.92 7.77 -16.59 -0.13 4.79 16 24 O -0.47 -6.12 13.02 -17.94 -0.23 -6.35 16 25 N -0.51 -6.27 10.28 -9.19 -0.09 -6.36 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.83 7.19 -51.93 -0.37 0.46 16 32 H 0.08 0.53 8.10 -51.93 -0.42 0.10 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.73 7.68 -51.93 -0.40 0.33 16 36 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 37 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 40 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.41 3.37 9.06 45.56 0.41 3.78 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -33.36 368.91 -6.87 -40.23 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.95 Total: -0.21 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.18 Total: -7.72 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.64 Total: -32.16 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.92 Total: -22.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.36 -6.87 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.412 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds