Wall clock time and date at job start Fri Apr 10 2020 21:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38383 * 119.39805 * 2 1 4 4 C 1.38313 * 119.45983 * 180.29620 * 3 2 1 5 5 C 1.50703 * 120.82596 * 179.70922 * 4 3 2 6 6 C 1.40052 * 118.34709 * 359.43805 * 4 3 2 7 7 C 1.47381 * 120.60533 * 180.25173 * 6 4 3 8 8 O 1.21510 * 120.00339 * 89.99964 * 7 6 4 9 9 O 1.34753 * 119.99875 * 269.99998 * 7 6 4 10 10 C 1.45202 * 116.99771 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46919 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47331 * 300.00167 * 11 10 9 13 13 C 1.52996 * 109.47094 * 60.00521 * 11 10 9 14 14 C 1.53000 * 109.46827 * 180.02562 * 11 10 9 15 15 C 1.50706 * 109.47090 * 179.97438 * 14 11 10 16 16 H 1.08000 * 119.99525 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00186 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00174 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47167 * 59.99980 * 19 17 15 21 21 H 1.48498 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47101 * 299.99862 * 19 17 15 23 23 C 1.40335 * 118.79369 * 0.27245 * 6 4 3 24 24 O 1.35416 * 119.80923 * 180.02562 * 23 6 4 25 25 N 1.31869 * 119.40231 * 179.72257 * 2 1 3 26 26 H 1.08995 * 109.47747 * 270.28113 * 1 2 3 27 27 H 1.09002 * 109.47204 * 30.28023 * 1 2 3 28 28 H 1.09005 * 109.47209 * 150.27259 * 1 2 3 29 29 H 1.07996 * 120.26736 * 0.03118 * 3 2 1 30 30 H 1.09002 * 109.47152 * 269.72174 * 5 4 3 31 31 H 1.09001 * 109.46980 * 149.72274 * 5 4 3 32 32 H 1.09004 * 109.47113 * 29.72255 * 5 4 3 33 33 H 1.08995 * 109.47645 * 300.00115 * 10 9 7 34 34 H 1.09001 * 109.47105 * 60.00321 * 10 9 7 35 35 H 1.09002 * 109.46704 * 60.00019 * 12 11 10 36 36 H 1.08997 * 109.47194 * 179.97438 * 12 11 10 37 37 H 1.09007 * 109.46954 * 300.00296 * 12 11 10 38 38 H 1.09004 * 109.47378 * 59.99928 * 13 11 10 39 39 H 1.08997 * 109.47267 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.47072 * 300.00061 * 13 11 10 41 41 H 1.08995 * 109.47435 * 299.99960 * 14 11 10 42 42 H 1.09001 * 109.47406 * 60.00222 * 14 11 10 43 43 H 0.97001 * 119.99979 * 180.02562 * 18 17 15 44 44 H 0.96699 * 114.00102 * 89.99491 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1862 1.2056 0.0000 4 6 3.5693 1.2071 -0.0062 5 6 4.3402 2.5021 -0.0130 6 6 4.2357 -0.0247 -0.0003 7 6 5.7084 -0.0811 -0.0009 8 8 6.3163 -0.0989 1.0511 9 8 6.3809 -0.1130 -1.1682 10 6 7.8300 -0.1675 -1.0928 11 6 8.4134 -0.1980 -2.5069 12 6 7.8943 -1.4328 -3.2464 13 6 7.9892 1.0639 -3.2609 14 6 9.9402 -0.2561 -2.4274 15 6 10.5149 -0.2868 -3.8203 16 1 9.8569 -0.2663 -4.6764 17 6 11.8806 -0.3408 -4.0015 18 7 12.6819 -0.3652 -2.9589 19 14 12.5929 -0.3781 -5.7279 20 1 12.1822 0.8473 -6.4594 21 1 14.0748 -0.4346 -5.6508 22 1 12.0881 -1.5759 -6.4460 23 6 3.4756 -1.2043 0.0059 24 8 4.0987 -2.4066 0.0122 25 7 2.1543 -1.1488 0.0056 26 1 -0.3634 0.0050 1.0276 27 1 -0.3634 0.8875 -0.5182 28 1 -0.3634 -0.8925 -0.5096 29 1 1.6408 2.1377 0.0005 30 1 4.5257 2.8092 -1.0423 31 1 5.2909 2.3616 0.5012 32 1 3.7614 3.2721 0.4972 33 1 8.1998 0.7119 -0.5656 34 1 8.1323 -1.0668 -0.5560 35 1 6.8065 -1.3917 -3.3029 36 1 8.3096 -1.4542 -4.2539 37 1 8.1966 -2.3318 -2.7091 38 1 8.3591 1.9436 -2.7341 39 1 8.4052 1.0424 -4.2681 40 1 6.9014 1.1049 -3.3174 41 1 10.3104 0.6233 -1.9005 42 1 10.2422 -1.1553 -1.8904 43 1 13.6427 -0.4029 -3.0865 44 1 4.2797 -2.7512 0.8974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798877381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:15 Heat of formation + Delta-G solvation = -137.263051 kcal Electronic energy + Delta-G solvation = -25495.157513 eV Core-core repulsion = 21797.367188 eV Total energy + Delta-G solvation = -3697.790325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25236 -41.03636 -38.78591 -38.53913 -36.95007 -35.38928 -34.41686 -32.89598 -30.03149 -29.19392 -28.60263 -28.00788 -27.80160 -25.32542 -24.53020 -23.17608 -21.84669 -20.02285 -19.62297 -19.18699 -18.56108 -18.37651 -17.81020 -17.06040 -16.78031 -16.52009 -15.68019 -15.33015 -15.20588 -15.00635 -14.79000 -14.34712 -14.26604 -14.03910 -14.01160 -13.92975 -13.79105 -13.27650 -13.05732 -12.98813 -12.89598 -12.78080 -12.69322 -12.69055 -12.34901 -12.29990 -12.06926 -11.94277 -11.92014 -11.42550 -11.10890 -10.95018 -10.73200 -10.64655 -10.52572 -9.96277 -8.16237 -6.24079 -0.43732 -0.04798 0.82437 1.41940 1.44503 1.50021 1.53280 2.22261 2.43460 2.50418 3.18243 3.29914 3.47329 3.50747 3.84154 3.86054 3.89798 4.09472 4.16972 4.19366 4.43003 4.47371 4.50756 4.54594 4.61285 4.69255 4.82754 4.93186 4.96294 4.96936 5.00125 5.05718 5.08853 5.16221 5.26992 5.38530 5.41891 5.45845 5.47744 5.50809 5.71122 5.85703 6.26224 6.32451 6.47096 6.71381 6.88893 7.43430 8.96205 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.002914 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.051179 B = 9606.971177 C = 9689.245519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.168 3.832 3 C -0.172 4.172 4 C 0.014 3.986 5 C -0.128 4.128 6 C -0.211 4.211 7 C 0.529 3.471 8 O -0.528 6.528 9 O -0.338 6.338 10 C 0.086 3.914 11 C -0.054 4.054 12 C -0.119 4.119 13 C -0.119 4.119 14 C 0.042 3.958 15 C -0.516 4.516 16 H 0.071 0.929 17 C -0.002 4.002 18 N -0.937 5.937 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.268 1.268 23 C 0.351 3.649 24 O -0.491 6.491 25 N -0.526 5.526 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.192 0.808 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.061 0.939 41 H -0.006 1.006 42 H -0.010 1.010 43 H 0.261 0.739 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.534 5.433 6.465 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.031 3.969 3 C -0.191 4.191 4 C 0.007 3.993 5 C -0.184 4.184 6 C -0.216 4.216 7 C 0.372 3.628 8 O -0.418 6.418 9 O -0.253 6.253 10 C 0.013 3.987 11 C -0.054 4.054 12 C -0.176 4.176 13 C -0.176 4.176 14 C 0.004 3.996 15 C -0.554 4.554 16 H 0.089 0.911 17 C -0.199 4.199 18 N -0.577 5.577 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.193 1.193 23 C 0.172 3.828 24 O -0.301 6.301 25 N -0.247 5.247 26 H 0.119 0.881 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.209 0.791 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.012 0.988 42 H 0.008 0.992 43 H 0.070 0.930 44 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -26.562 4.650 6.210 27.672 hybrid contribution 2.079 0.030 0.139 2.084 sum -24.483 4.681 6.349 25.723 Atomic orbital electron populations 1.20971 0.84977 1.05285 1.04959 1.22036 0.98970 0.86626 0.89273 1.22216 0.92225 1.01223 1.03444 1.20613 0.95070 0.93427 0.90225 1.21077 0.99530 0.93060 1.04726 1.20181 0.89711 0.96348 1.15338 1.21099 0.88731 0.71065 0.81892 1.90847 1.70641 1.46669 1.33636 1.86654 1.22843 1.82468 1.33334 1.23256 0.74647 1.01480 0.99325 1.20635 0.95751 0.97589 0.91433 1.21635 0.99633 0.95831 1.00511 1.21636 1.00138 0.95389 1.00406 1.18972 0.89136 0.94855 0.96594 1.21487 0.91659 1.49246 0.93044 0.91146 1.25915 0.97952 0.95251 1.00773 1.70100 1.03785 1.52187 1.31677 0.85583 0.76874 0.79178 0.79933 1.19060 1.21412 1.19317 1.19070 0.86945 0.84066 0.92741 1.84677 1.76853 1.32844 1.35745 1.67186 1.08029 1.32073 1.17416 0.88099 0.87073 0.90592 0.79056 0.88346 0.93031 0.86397 0.91691 0.92391 0.92398 0.92328 0.94331 0.93707 0.92426 0.91972 0.98782 0.99178 0.93012 0.71724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.16 71.23 0.72 -0.07 16 2 C 0.17 2.71 6.78 42.59 0.29 3.00 16 3 C -0.17 -2.30 9.41 22.32 0.21 -2.09 16 4 C 0.01 0.28 5.95 -19.41 -0.12 0.16 16 5 C -0.13 -2.04 9.69 71.24 0.69 -1.35 16 6 C -0.21 -5.73 5.78 -19.92 -0.12 -5.85 16 7 C 0.53 17.53 5.56 70.23 0.39 17.92 16 8 O -0.53 -19.86 16.90 19.80 0.33 -19.52 16 9 O -0.34 -11.92 8.89 -56.64 -0.50 -12.42 16 10 C 0.09 3.35 4.33 71.98 0.31 3.66 16 11 C -0.05 -2.24 0.61 -52.18 -0.03 -2.27 16 12 C -0.12 -4.69 8.08 71.98 0.58 -4.11 16 13 C -0.12 -4.44 8.08 71.98 0.58 -3.85 16 14 C 0.04 2.16 4.04 29.85 0.12 2.28 16 15 C -0.52 -28.23 7.65 25.60 0.20 -28.04 16 16 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 17 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 18 N -0.94 -56.88 13.29 21.44 0.28 -56.60 16 19 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.35 9.41 7.77 85.14 0.66 10.07 16 24 O -0.49 -13.06 13.02 -87.11 -1.13 -14.19 16 25 N -0.53 -12.43 10.28 -296.01 -3.04 -15.47 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.11 0.21 8.07 -2.39 -0.02 0.19 16 28 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.19 0.81 8.06 -2.91 -0.02 0.78 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.09 7.19 -2.39 -0.02 1.07 16 32 H 0.12 1.03 8.10 -2.38 -0.02 1.01 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.06 7.68 -2.39 -0.02 2.04 16 36 H 0.06 2.38 6.62 -2.39 -0.02 2.36 16 37 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.25 6.62 -2.39 -0.02 2.23 16 40 H 0.06 2.03 7.68 -2.39 -0.02 2.01 16 41 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.42 7.45 9.06 -74.06 -0.67 6.78 16 Total: -1.00 -74.16 368.91 3.26 -70.90 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.34 Total: 11.50 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.96 Total: -10.17 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -2.76 Total: -72.07 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -1.30 Total: -46.13 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -74.16 3.26 -70.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798877381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.364 kcal (2) G-P(sol) polarization free energy of solvation -74.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds