Wall clock time and date at job start Fri Apr 10 2020 21:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 C 1.52997 * 109.47162 * 120.00353 * 2 1 3 5 5 H 1.09000 * 109.47022 * 300.00085 * 4 2 1 6 6 C 1.52993 * 109.47325 * 60.00250 * 4 2 1 7 7 O 1.42902 * 109.47236 * 185.00443 * 6 4 2 8 8 C 1.53005 * 109.47204 * 180.02562 * 4 2 1 9 9 N 1.46504 * 109.47239 * 174.99899 * 8 4 2 10 10 C 1.34777 * 119.99800 * 179.97438 * 9 8 4 11 11 O 1.21585 * 119.99914 * 359.97438 * 10 9 8 12 12 C 1.47534 * 119.99436 * 179.97438 * 10 9 8 13 13 C 1.39661 * 120.19959 * 359.97438 * 12 10 9 14 14 C 1.37833 * 119.91839 * 179.97438 * 13 12 10 15 15 C 1.38567 * 120.32258 * 0.02562 * 14 13 12 16 16 C 1.38029 * 120.40619 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.06664 * 359.95361 * 16 15 14 18 18 O 1.35524 * 120.15909 * 180.02562 * 17 16 15 19 19 C 1.34815 * 116.99762 * 354.40543 * 18 17 16 20 20 H 1.08001 * 120.00398 * 5.06019 * 19 18 17 21 21 C 1.38698 * 119.99875 * 185.06601 * 19 18 17 22 22 N 1.31529 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00327 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46816 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47408 * 119.99516 * 23 21 19 26 26 H 1.48503 * 109.46953 * 239.99842 * 23 21 19 27 27 H 1.09000 * 109.47221 * 299.99684 * 1 2 3 28 28 H 1.08998 * 109.46962 * 60.00139 * 1 2 3 29 29 H 1.09006 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47221 * 240.00316 * 2 1 3 31 31 H 1.09002 * 109.47633 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47523 * 300.00069 * 3 2 1 33 33 H 1.09000 * 109.46792 * 60.00053 * 3 2 1 34 34 H 1.09002 * 109.47340 * 304.99776 * 6 4 2 35 35 H 1.08995 * 109.47494 * 64.99930 * 6 4 2 36 36 H 0.96701 * 113.99882 * 179.97438 * 7 6 4 37 37 H 1.08992 * 109.47361 * 54.99411 * 8 4 2 38 38 H 1.09004 * 109.46832 * 294.99678 * 8 4 2 39 39 H 0.96997 * 119.99877 * 359.97438 * 9 8 4 40 40 H 1.07999 * 120.04029 * 0.02562 * 13 12 10 41 41 H 1.07997 * 119.83568 * 180.29263 * 14 13 12 42 42 H 1.08002 * 119.80042 * 179.97438 * 15 14 13 43 43 H 1.07993 * 119.96591 * 179.97438 * 16 15 14 44 44 H 0.96992 * 120.00366 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 8 1.9080 -2.8027 2.4702 8 6 3.5700 -0.7208 1.2495 9 7 4.0583 -1.3046 2.5013 10 6 5.3834 -1.4086 2.7245 11 8 6.1735 -1.0185 1.8867 12 6 5.8751 -1.9961 3.9854 13 6 4.9711 -2.4450 4.9507 14 6 5.4368 -2.9933 6.1264 15 6 6.7990 -3.1013 6.3567 16 6 7.7042 -2.6609 5.4123 17 6 7.2533 -2.1063 4.2221 18 8 8.1404 -1.6738 3.2933 19 6 9.4448 -1.7029 3.6327 20 1 9.7483 -2.1352 4.5747 21 6 10.3972 -1.1776 2.7720 22 7 10.0277 -0.6515 1.6245 23 14 12.2045 -1.2173 3.2424 24 1 12.3554 -1.8567 4.5742 25 1 12.9625 -1.9958 2.2303 26 1 12.7323 0.1697 3.2971 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.4437 -2.1652 1.1596 35 1 1.9647 -2.7028 0.4073 36 1 1.6168 -3.7222 2.5395 37 1 3.9330 0.3030 1.1601 38 1 3.9337 -1.3100 0.4076 39 1 3.4280 -1.6162 3.1695 40 1 3.9085 -2.3635 4.7758 41 1 4.7366 -3.3444 6.8699 42 1 7.1546 -3.5320 7.2811 43 1 8.7642 -2.7481 5.5993 44 1 10.6937 -0.2845 1.0225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805317817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:19 Heat of formation + Delta-G solvation = -96.609189 kcal Electronic energy + Delta-G solvation = -25627.667856 eV Core-core repulsion = 21931.640414 eV Total energy + Delta-G solvation = -3696.027441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.58238 -38.74254 -37.45323 -36.22442 -35.85293 -33.56900 -32.25908 -30.76647 -29.37950 -28.81521 -27.86919 -25.44714 -24.99981 -23.04697 -22.13865 -21.15315 -20.23976 -19.40050 -17.94481 -17.59469 -17.24075 -16.12328 -15.65915 -15.33886 -14.82405 -14.60067 -14.38682 -14.27370 -13.95936 -13.92905 -13.68448 -13.48590 -13.22442 -12.81077 -12.47990 -12.41712 -12.35649 -12.19945 -11.71967 -11.64965 -11.53719 -11.22924 -11.02696 -10.97598 -10.84468 -10.80609 -10.67427 -10.52443 -10.38904 -9.97002 -9.46671 -8.81494 -8.67434 -8.28752 -8.12418 -7.21021 -6.37197 -3.97037 1.84034 2.41691 3.15707 3.16777 3.22288 3.74635 3.91154 3.99366 4.15735 4.60017 4.73635 4.76252 4.85149 4.96492 5.16155 5.22128 5.25921 5.28197 5.40687 5.45768 5.57508 5.61212 5.63902 5.66912 5.69812 5.74957 5.84050 5.94170 5.99206 6.04135 6.19325 6.23550 6.29118 6.32536 6.67753 6.80749 7.02266 7.16845 7.24976 7.33632 7.38025 7.52124 7.79692 8.00641 8.45672 9.02759 9.31960 9.77134 10.76977 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003835 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.216807 B = 7299.783813 C = 8805.978795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.096 4.096 5 H 0.083 0.917 6 C 0.080 3.920 7 O -0.570 6.570 8 C 0.131 3.869 9 N -0.732 5.732 10 C 0.550 3.450 11 O -0.510 6.510 12 C -0.223 4.223 13 C -0.036 4.036 14 C -0.232 4.232 15 C -0.052 4.052 16 C -0.241 4.241 17 C 0.189 3.811 18 O -0.126 6.126 19 C -0.403 4.403 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.834 5.834 23 Si 0.940 3.060 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.380 0.620 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.402 0.598 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.217 -1.959 0.558 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.210 4.210 4 C -0.115 4.115 5 H 0.101 0.899 6 C 0.002 3.998 7 O -0.376 6.376 8 C 0.006 3.994 9 N -0.390 5.390 10 C 0.339 3.661 11 O -0.385 6.385 12 C -0.228 4.228 13 C -0.055 4.055 14 C -0.251 4.251 15 C -0.071 4.071 16 C -0.260 4.260 17 C 0.130 3.870 18 O -0.024 6.024 19 C -0.479 4.479 20 H 0.111 0.889 21 C -0.164 4.164 22 N -0.466 5.466 23 Si 0.764 3.236 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.227 0.773 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.240 0.760 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.148 0.852 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.255 -0.861 -0.435 17.282 hybrid contribution 0.303 -0.822 0.510 1.014 sum -16.952 -1.683 0.075 17.035 Atomic orbital electron populations 1.21927 0.95054 1.01722 1.01988 1.20991 0.95664 0.96665 0.97204 1.21930 1.02137 0.95151 1.01794 1.21489 0.95772 0.94785 0.99463 0.89863 1.22317 0.97736 0.93110 0.86637 1.86323 1.81612 1.30306 1.39340 1.21212 0.91389 0.98882 0.87880 1.45943 1.07187 1.65470 1.20432 1.18242 0.81724 0.79091 0.86999 1.90926 1.54691 1.47204 1.45707 1.18927 0.91185 1.14999 0.97687 1.20829 0.97516 0.94589 0.92560 1.20460 0.95169 1.10490 0.99002 1.20880 0.93150 0.95773 0.97309 1.21143 1.00538 1.08524 0.95801 1.19307 0.89198 0.90447 0.88043 1.84188 1.15787 1.68160 1.34270 1.21535 0.79347 1.41117 1.05917 0.88915 1.25372 1.00121 0.95735 0.95129 1.70148 1.34488 1.33843 1.08112 0.85675 0.80662 0.78409 0.78809 1.19015 1.20084 1.20072 0.92504 0.92504 0.92536 0.90669 0.91570 0.92523 0.92520 0.93365 0.93555 0.77283 0.91622 0.92367 0.75957 0.86704 0.87391 0.87317 0.85178 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.85 37.16 0.33 -0.75 16 2 C -0.09 -0.78 2.51 -90.62 -0.23 -1.00 16 3 C -0.15 -1.46 8.85 37.16 0.33 -1.13 16 4 C -0.10 -1.04 1.88 -90.62 -0.17 -1.21 16 5 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 6 C 0.08 0.75 6.21 37.15 0.23 0.98 16 7 O -0.57 -5.77 10.88 -35.23 -0.38 -6.15 16 8 C 0.13 2.02 4.85 -4.04 -0.02 2.00 16 9 N -0.73 -13.06 4.96 -61.35 -0.30 -13.37 16 10 C 0.55 12.95 7.76 -12.47 -0.10 12.85 16 11 O -0.51 -14.68 15.17 -16.56 -0.25 -14.93 16 12 C -0.22 -5.15 5.89 -104.81 -0.62 -5.77 16 13 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 14 C -0.23 -4.03 10.02 -39.61 -0.40 -4.42 16 15 C -0.05 -0.97 10.03 -39.54 -0.40 -1.37 16 16 C -0.24 -5.40 9.16 -39.44 -0.36 -5.76 16 17 C 0.19 4.91 6.66 -38.60 -0.26 4.65 16 18 O -0.13 -3.84 7.84 -21.07 -0.17 -4.01 16 19 C -0.40 -11.75 9.49 30.90 0.29 -11.46 16 20 H 0.09 2.46 5.21 -52.49 -0.27 2.19 16 21 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 22 N -0.83 -25.75 13.67 55.48 0.76 -24.99 16 23 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 6.32 -51.93 -0.33 0.04 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.74 6.32 -51.93 -0.33 0.41 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.36 6.18 -51.93 -0.32 0.04 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.38 2.32 9.12 45.56 0.42 2.74 16 37 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.40 6.28 4.32 -40.82 -0.18 6.10 16 40 H 0.12 1.75 6.40 -52.49 -0.34 1.42 16 41 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 355.80 15.07 5.36 5.36 Total: -1.00 -36.44 355.80 -7.16 -43.61 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.33 Total: 10.74 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.83 Total: -12.27 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.45 Total: -38.36 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.80 Total: -25.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.44 -7.16 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805317817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.000 kcal (2) G-P(sol) polarization free energy of solvation -36.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds