Wall clock time and date at job start Fri Apr 10 2020 21:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 C 1.52997 * 109.47162 * 120.00353 * 2 1 3 5 5 H 1.09000 * 109.47022 * 300.00085 * 4 2 1 6 6 C 1.52993 * 109.47325 * 60.00250 * 4 2 1 7 7 O 1.42902 * 109.47236 * 185.00443 * 6 4 2 8 8 C 1.53005 * 109.47204 * 180.02562 * 4 2 1 9 9 N 1.46504 * 109.47239 * 174.99899 * 8 4 2 10 10 C 1.34777 * 119.99800 * 179.97438 * 9 8 4 11 11 O 1.21585 * 119.99914 * 359.97438 * 10 9 8 12 12 C 1.47534 * 119.99436 * 179.97438 * 10 9 8 13 13 C 1.39661 * 120.19959 * 359.97438 * 12 10 9 14 14 C 1.37833 * 119.91839 * 179.97438 * 13 12 10 15 15 C 1.38567 * 120.32258 * 0.02562 * 14 13 12 16 16 C 1.38029 * 120.40619 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.06664 * 359.95361 * 16 15 14 18 18 O 1.35524 * 120.15909 * 180.02562 * 17 16 15 19 19 C 1.34815 * 116.99762 * 354.40543 * 18 17 16 20 20 H 1.08001 * 120.00398 * 5.06019 * 19 18 17 21 21 C 1.38698 * 119.99875 * 185.06601 * 19 18 17 22 22 N 1.31529 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00327 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46816 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47408 * 119.99516 * 23 21 19 26 26 H 1.48503 * 109.46953 * 239.99842 * 23 21 19 27 27 H 1.09000 * 109.47221 * 299.99684 * 1 2 3 28 28 H 1.08998 * 109.46962 * 60.00139 * 1 2 3 29 29 H 1.09006 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47221 * 240.00316 * 2 1 3 31 31 H 1.09002 * 109.47633 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47523 * 300.00069 * 3 2 1 33 33 H 1.09000 * 109.46792 * 60.00053 * 3 2 1 34 34 H 1.09002 * 109.47340 * 304.99776 * 6 4 2 35 35 H 1.08995 * 109.47494 * 64.99930 * 6 4 2 36 36 H 0.96701 * 113.99882 * 179.97438 * 7 6 4 37 37 H 1.08992 * 109.47361 * 54.99411 * 8 4 2 38 38 H 1.09004 * 109.46832 * 294.99678 * 8 4 2 39 39 H 0.96997 * 119.99877 * 359.97438 * 9 8 4 40 40 H 1.07999 * 120.04029 * 0.02562 * 13 12 10 41 41 H 1.07997 * 119.83568 * 180.29263 * 14 13 12 42 42 H 1.08002 * 119.80042 * 179.97438 * 15 14 13 43 43 H 1.07993 * 119.96591 * 179.97438 * 16 15 14 44 44 H 0.96992 * 120.00366 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 8 1.9080 -2.8027 2.4702 8 6 3.5700 -0.7208 1.2495 9 7 4.0583 -1.3046 2.5013 10 6 5.3834 -1.4086 2.7245 11 8 6.1735 -1.0185 1.8867 12 6 5.8751 -1.9961 3.9854 13 6 4.9711 -2.4450 4.9507 14 6 5.4368 -2.9933 6.1264 15 6 6.7990 -3.1013 6.3567 16 6 7.7042 -2.6609 5.4123 17 6 7.2533 -2.1063 4.2221 18 8 8.1404 -1.6738 3.2933 19 6 9.4448 -1.7029 3.6327 20 1 9.7483 -2.1352 4.5747 21 6 10.3972 -1.1776 2.7720 22 7 10.0277 -0.6515 1.6245 23 14 12.2045 -1.2173 3.2424 24 1 12.3554 -1.8567 4.5742 25 1 12.9625 -1.9958 2.2303 26 1 12.7323 0.1697 3.2971 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.4437 -2.1652 1.1596 35 1 1.9647 -2.7028 0.4073 36 1 1.6168 -3.7222 2.5395 37 1 3.9330 0.3030 1.1601 38 1 3.9337 -1.3100 0.4076 39 1 3.4280 -1.6162 3.1695 40 1 3.9085 -2.3635 4.7758 41 1 4.7366 -3.3444 6.8699 42 1 7.1546 -3.5320 7.2811 43 1 8.7642 -2.7481 5.5993 44 1 10.6937 -0.2845 1.0225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805317817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:18 Heat of formation + Delta-G solvation = -123.919813 kcal Electronic energy + Delta-G solvation = -25628.852133 eV Core-core repulsion = 21931.640414 eV Total energy + Delta-G solvation = -3697.211719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28479 -40.11006 -38.94407 -37.99693 -36.62238 -35.13211 -34.30993 -32.30757 -30.57062 -30.46313 -28.68201 -27.38834 -26.21085 -24.44230 -23.40123 -22.73817 -21.59515 -20.65473 -19.83426 -19.16448 -18.19974 -17.76555 -17.10061 -16.67723 -16.31332 -15.97788 -15.92523 -15.63654 -15.52477 -15.31805 -15.17682 -14.76184 -14.63562 -14.25344 -13.98989 -13.65963 -13.53687 -13.40057 -13.00858 -12.98915 -12.69974 -12.63840 -12.53276 -12.39211 -12.30198 -12.09054 -11.79747 -11.58238 -11.40461 -11.38361 -10.83888 -10.74731 -10.53294 -9.99807 -9.71279 -9.01851 -8.43817 -6.15065 0.15243 0.74080 1.32008 1.43169 1.52402 2.14351 2.16311 2.37060 2.88991 3.24432 3.28908 3.48761 3.68168 3.86732 4.06660 4.11419 4.12794 4.20662 4.32292 4.39628 4.46805 4.54010 4.59371 4.64036 4.67799 4.78293 4.83334 4.88939 4.97708 5.01358 5.04777 5.08749 5.13042 5.16430 5.27301 5.43710 5.49174 5.51407 5.63208 5.70068 5.70605 5.97597 6.18981 6.80823 6.95186 7.03463 7.58991 7.82433 8.77260 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003835 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.216807 B = 7299.783813 C = 8805.978795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.155 4.155 4 C -0.085 4.085 5 H 0.088 0.912 6 C 0.081 3.919 7 O -0.589 6.589 8 C 0.126 3.874 9 N -0.704 5.704 10 C 0.540 3.460 11 O -0.578 6.578 12 C -0.245 4.245 13 C -0.028 4.028 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.258 4.258 17 C 0.149 3.851 18 O -0.190 6.190 19 C -0.428 4.428 20 H 0.107 0.893 21 C -0.024 4.024 22 N -0.907 5.907 23 Si 1.024 2.976 24 H -0.245 1.245 25 H -0.268 1.268 26 H -0.269 1.269 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.398 0.602 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.416 0.584 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.124 0.876 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.398 -3.697 3.825 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.212 4.212 4 C -0.104 4.104 5 H 0.107 0.893 6 C 0.004 3.996 7 O -0.399 6.399 8 C 0.002 3.998 9 N -0.362 5.362 10 C 0.330 3.670 11 O -0.458 6.458 12 C -0.249 4.249 13 C -0.046 4.046 14 C -0.218 4.218 15 C -0.058 4.058 16 C -0.278 4.278 17 C 0.094 3.906 18 O -0.093 6.093 19 C -0.504 4.504 20 H 0.124 0.876 21 C -0.223 4.223 22 N -0.543 5.543 23 Si 0.842 3.158 24 H -0.168 1.168 25 H -0.193 1.193 26 H -0.194 1.194 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.249 0.751 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.258 0.742 40 H 0.172 0.828 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.142 0.858 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.552 -2.652 2.906 20.925 hybrid contribution 0.892 -0.406 -0.273 1.018 sum -19.660 -3.058 2.633 20.069 Atomic orbital electron populations 1.21883 0.92695 1.02794 1.02695 1.20991 0.97441 0.95720 0.96116 1.21941 1.00393 0.96121 1.02719 1.21458 0.91560 0.96724 1.00662 0.89343 1.22320 0.99422 0.91562 0.86320 1.86218 1.82179 1.31984 1.39477 1.21391 0.95071 0.97204 0.86109 1.45775 1.05424 1.63690 1.21321 1.18636 0.82984 0.78546 0.86813 1.90902 1.56758 1.50300 1.47860 1.19349 0.91183 1.15680 0.98732 1.21277 0.98639 0.93013 0.91690 1.21168 0.95558 1.06391 0.98719 1.21433 0.93216 0.93579 0.97572 1.21301 1.01347 1.09348 0.95767 1.20086 0.90115 0.91245 0.89184 1.84191 1.16552 1.71781 1.36786 1.22104 0.79868 1.41670 1.06749 0.87559 1.26794 1.05758 0.94942 0.94764 1.70345 1.36396 1.37237 1.10296 0.84481 0.73162 0.78787 0.79340 1.16791 1.19302 1.19380 0.92050 0.91612 0.91242 0.90912 0.94320 0.91144 0.92076 0.90173 0.94116 0.75081 0.93426 0.94261 0.74239 0.82811 0.81789 0.82679 0.85843 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.85 71.98 0.64 -1.00 16 2 C -0.08 -1.42 2.51 -10.80 -0.03 -1.44 16 3 C -0.15 -2.95 8.85 71.98 0.64 -2.32 16 4 C -0.09 -1.75 1.88 -10.80 -0.02 -1.77 16 5 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 6 C 0.08 1.32 6.21 71.98 0.45 1.77 16 7 O -0.59 -10.07 10.88 -148.98 -1.62 -11.70 16 8 C 0.13 4.08 4.85 86.38 0.42 4.50 16 9 N -0.70 -25.48 4.96 -466.26 -2.31 -27.79 16 10 C 0.54 26.76 7.76 86.69 0.67 27.43 16 11 O -0.58 -36.34 15.17 16.91 0.26 -36.08 16 12 C -0.24 -11.45 5.89 -19.99 -0.12 -11.56 16 13 C -0.03 -0.92 9.54 22.52 0.21 -0.71 16 14 C -0.20 -5.73 10.02 22.25 0.22 -5.51 16 15 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16 16 C -0.26 -11.51 9.16 22.36 0.20 -11.31 16 17 C 0.15 8.05 6.66 22.91 0.15 8.20 16 18 O -0.19 -12.60 7.84 0.79 0.01 -12.60 16 19 C -0.43 -26.70 9.49 67.93 0.64 -26.05 16 20 H 0.11 5.95 5.21 -2.91 -0.02 5.93 16 21 C -0.02 -1.45 5.49 84.85 0.47 -0.98 16 22 N -0.91 -60.83 13.67 21.62 0.30 -60.53 16 23 Si 1.02 45.33 29.55 68.60 2.03 47.36 16 24 H -0.24 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.63 6.32 -2.38 -0.02 0.61 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 0.94 6.32 -2.39 -0.02 0.92 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 0.85 6.18 -2.39 -0.01 0.83 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.40 3.45 9.12 -74.06 -0.68 2.78 16 37 H 0.05 1.72 6.17 -2.39 -0.01 1.70 16 38 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.42 12.25 4.32 -92.71 -0.40 11.85 16 40 H 0.15 3.88 6.40 -2.91 -0.02 3.87 16 41 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.12 5.54 5.64 -2.91 -0.02 5.53 16 44 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 Total: -1.00 -91.90 355.80 3.39 -88.51 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.04 Total: 34.65 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 4.78 Total: -21.82 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.01 Total: -88.32 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -1.36 Total: -60.38 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -91.90 3.39 -88.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805317817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.411 kcal (2) G-P(sol) polarization free energy of solvation -91.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds