Wall clock time and date at job start Fri Apr 10 2020 21:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46851 * 2 1 4 4 C 1.52996 * 109.47219 * 239.99956 * 2 1 3 5 5 C 1.50699 * 109.47239 * 59.99650 * 4 2 1 6 6 H 1.08003 * 119.99960 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00253 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99629 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47142 * 60.00574 * 9 7 5 11 11 H 1.48506 * 109.47042 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47444 * 300.00415 * 9 7 5 13 13 C 1.52993 * 109.46733 * 119.99706 * 2 1 3 14 14 N 1.46906 * 109.47378 * 299.99953 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.50704 * 109.47041 * 179.97438 * 15 14 13 17 17 C 1.38264 * 119.95351 * 104.99651 * 16 15 14 18 18 C 1.38488 * 120.09481 * 179.97438 * 17 16 15 19 19 C 1.39305 * 119.91931 * 359.97438 * 18 17 16 20 20 C 1.38483 * 119.87898 * 359.95497 * 19 18 17 21 21 C 1.38655 * 119.95976 * 284.72417 * 16 15 14 22 22 O 1.35974 * 119.98230 * 0.02562 * 21 16 15 23 23 O 1.36501 * 108.63952 * 179.97438 * 19 18 17 24 24 C 1.43990 * 105.50483 * 342.70425 * 23 19 18 25 25 O 1.36602 * 131.47191 * 179.97438 * 18 17 16 26 26 H 1.09002 * 109.47288 * 300.00339 * 1 2 3 27 27 H 1.09001 * 109.46630 * 60.00102 * 1 2 3 28 28 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46524 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46962 * 299.99689 * 3 2 1 31 31 H 1.08992 * 109.47457 * 59.99755 * 3 2 1 32 32 H 1.08996 * 109.47261 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46870 * 299.99985 * 4 2 1 34 34 H 0.97001 * 120.00663 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46862 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47250 * 60.00079 * 13 2 1 37 37 H 1.00901 * 111.00013 * 303.95621 * 14 13 2 38 38 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 39 39 H 1.08995 * 109.47296 * 60.00089 * 15 14 13 40 40 H 1.07998 * 119.95656 * 0.02562 * 17 16 15 41 41 H 1.08000 * 120.00312 * 179.97438 * 20 19 18 42 42 H 0.96702 * 114.00470 * 89.99991 * 22 21 16 43 43 H 1.08996 * 110.56640 * 268.59467 * 24 23 19 44 44 H 1.08989 * 110.57478 * 145.71943 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8713 -0.4818 -3.7320 8 7 2.6274 -1.5509 -3.8526 9 14 1.2492 0.3992 -5.2572 10 1 1.7442 1.7992 -5.2567 11 1 1.7441 -0.3010 -6.4697 12 1 -0.2358 0.3993 -5.2577 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0286 2.4487 15 6 2.0217 -0.6944 3.6703 16 6 1.5011 0.0430 4.8771 17 6 0.4612 -0.4899 5.6162 18 6 -0.0192 0.1849 6.7260 19 6 0.5471 1.4021 7.0980 20 6 1.5896 1.9331 6.3571 21 6 2.0693 1.2521 5.2482 22 8 3.0953 1.7718 4.5228 23 8 -0.0961 1.8605 8.2113 24 6 -1.3276 1.1172 8.2777 25 8 -1.0173 -0.1190 7.6077 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 2.8618 -1.8824 -4.7335 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7488 1.2493 37 1 1.8197 0.9437 2.4402 38 1 1.6586 -1.7219 3.6874 39 1 3.1116 -0.6938 3.6869 40 1 0.0233 -1.4342 5.3281 41 1 2.0298 2.8769 6.6434 42 1 2.8134 2.3510 3.8016 43 1 -2.1235 1.6474 7.7547 44 1 -1.6071 0.9310 9.3146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808429208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:33 Heat of formation + Delta-G solvation = -89.615574 kcal Electronic energy + Delta-G solvation = -25167.139409 eV Core-core repulsion = 21471.415233 eV Total energy + Delta-G solvation = -3695.724176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43904 -39.65096 -37.56809 -36.59232 -36.21742 -34.42303 -32.31192 -30.82666 -29.53464 -27.16872 -26.55874 -26.34696 -25.53913 -24.22483 -23.23461 -22.35365 -21.79222 -19.22999 -18.13127 -17.82558 -17.73929 -16.97831 -16.30877 -16.14265 -15.53964 -15.20756 -14.86912 -14.68966 -14.60977 -14.18187 -14.08869 -13.77763 -13.25738 -13.10033 -12.84837 -12.67811 -12.48744 -12.13844 -12.04941 -11.97287 -11.69159 -10.98858 -10.92945 -10.86687 -10.78985 -10.77301 -10.50259 -10.27573 -10.15050 -9.70106 -9.14513 -9.01497 -8.85230 -8.31755 -8.29725 -8.06773 -5.96335 -3.96620 0.76136 0.89667 2.36306 3.08722 3.18299 3.34371 3.39286 3.41234 3.98673 4.18536 4.34940 4.41079 4.50191 4.60360 4.70958 4.79895 4.87806 5.18015 5.39363 5.41643 5.58389 5.61626 5.70707 5.74210 5.76578 5.88483 5.93688 5.95439 6.21657 6.23461 6.30229 6.47384 6.63564 6.75361 6.76488 6.80921 7.16164 7.18923 7.24233 7.33248 7.35062 7.59246 7.69958 7.84809 8.03702 8.47766 9.08525 9.66145 11.15266 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.002555 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.830710 B =10957.699373 C =11122.155778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.069 3.931 14 N -0.678 5.678 15 C 0.101 3.899 16 C -0.084 4.084 17 C -0.067 4.067 18 C 0.023 3.977 19 C 0.042 3.958 20 C -0.126 4.126 21 C 0.122 3.878 22 O -0.487 6.487 23 O -0.310 6.310 24 C 0.214 3.786 25 O -0.308 6.308 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.333 0.667 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.393 0.607 43 H 0.085 0.915 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 5.909 23.081 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.310 5.310 15 C -0.028 4.028 16 C -0.086 4.086 17 C -0.087 4.087 18 C -0.022 4.022 19 C -0.002 4.002 20 C -0.145 4.145 21 C 0.077 3.923 22 O -0.298 6.298 23 O -0.226 6.226 24 C 0.102 3.898 25 O -0.224 6.224 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.250 0.750 43 H 0.102 0.898 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.888 5.101 23.542 24.579 hybrid contribution 0.181 1.014 -1.052 1.472 sum -4.706 6.115 22.490 23.777 Atomic orbital electron populations 1.21605 0.95000 1.00627 1.00125 1.20631 0.95845 0.94984 0.94372 1.21772 0.99781 0.96754 1.00308 1.19120 0.95925 0.95218 0.90116 1.21192 1.30844 1.11955 0.90613 0.92363 1.25013 0.95394 0.95119 0.99043 1.69948 1.37190 1.23160 1.23421 0.86730 0.79192 0.79769 0.82722 1.20366 1.21453 1.20328 1.22156 0.96597 0.98222 0.88973 1.60709 1.63413 1.06156 1.00768 1.20766 0.97701 0.97670 0.86686 1.19904 0.95233 0.95833 0.97607 1.19829 0.96602 1.01213 0.91017 1.19748 0.93366 0.95052 0.93989 1.19461 0.97986 0.93990 0.88779 1.20170 0.96939 1.01657 0.95779 1.17725 0.89445 0.92559 0.92607 1.84854 1.29839 1.67220 1.47850 1.87356 1.32940 1.61332 1.40963 1.25628 0.86714 0.77451 1.00038 1.87396 1.52386 1.32095 1.50546 0.93953 0.92705 0.94139 0.93958 0.91672 0.95032 0.96870 0.96657 0.93092 0.95515 0.91330 0.84779 0.89937 0.93329 0.84010 0.84169 0.75007 0.89762 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 2 C -0.06 -1.10 0.60 -154.51 -0.09 -1.20 16 3 C -0.13 -2.25 7.89 37.16 0.29 -1.96 16 4 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 5 C -0.51 -13.65 7.65 -34.44 -0.26 -13.92 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.07 1.12 4.65 -3.82 -0.02 1.10 16 14 N -0.68 -9.05 5.70 -115.06 -0.66 -9.71 16 15 C 0.10 1.19 5.43 -4.97 -0.03 1.16 16 16 C -0.08 -0.95 5.43 -104.46 -0.57 -1.52 16 17 C -0.07 -0.75 9.67 -39.48 -0.38 -1.13 16 18 C 0.02 0.26 7.15 -39.09 -0.28 -0.02 16 19 C 0.04 0.48 7.15 -39.09 -0.28 0.20 16 20 C -0.13 -1.32 10.00 -39.32 -0.39 -1.72 16 21 C 0.12 1.31 6.55 -39.26 -0.26 1.06 16 22 O -0.49 -4.83 12.45 -19.66 -0.24 -5.08 16 23 O -0.31 -3.23 11.40 -45.69 -0.52 -3.75 16 24 C 0.21 1.61 8.89 101.05 0.90 2.51 16 25 O -0.31 -3.31 11.41 -46.03 -0.53 -3.83 16 26 H 0.04 0.71 7.60 -51.93 -0.39 0.31 16 27 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 31 H 0.03 0.45 6.57 -51.93 -0.34 0.10 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.33 4.09 5.60 -39.29 -0.22 3.87 16 38 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 39 H 0.05 0.59 7.99 -51.93 -0.41 0.18 16 40 H 0.14 1.40 8.00 -52.49 -0.42 0.98 16 41 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.39 2.52 8.42 45.56 0.38 2.91 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.13 0.56 8.14 -51.94 -0.42 0.14 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -31.57 356.28 -7.89 -39.46 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.75 Total: 2.18 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.28 Total: -15.14 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.08 Total: -35.58 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.29 Total: -12.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.57 -7.89 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808429208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.154 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds