Wall clock time and date at job start Fri Apr 10 2020 21:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47011 * 179.97438 * 3 2 1 5 5 C 1.38628 * 119.81922 * 90.00057 * 4 3 2 6 6 C 1.37953 * 120.43269 * 179.97438 * 5 4 3 7 7 C 1.38959 * 120.07358 * 359.97438 * 6 5 4 8 8 N 1.38827 * 120.18178 * 179.97438 * 7 6 5 9 9 C 1.40409 * 119.63714 * 0.02562 * 7 6 5 10 10 C 1.47290 * 120.21182 * 180.02562 * 9 7 6 11 11 O 1.21519 * 120.00088 * 354.39120 * 10 9 7 12 12 O 1.34766 * 119.99920 * 174.38913 * 10 9 7 13 13 C 1.45202 * 117.00378 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47381 * 179.97438 * 13 12 10 15 15 O 1.42905 * 109.47066 * 64.99868 * 14 13 12 16 16 C 1.42895 * 114.00002 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47091 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00257 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99775 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00298 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99911 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47325 * 90.00139 * 21 19 17 23 23 H 1.48503 * 109.47396 * 209.99916 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00293 * 21 19 17 25 25 C 1.37726 * 119.81738 * 270.25925 * 4 3 2 26 26 H 1.08990 * 109.47386 * 300.00459 * 1 2 3 27 27 H 1.09004 * 109.46953 * 60.00184 * 1 2 3 28 28 H 1.09005 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47285 * 239.99941 * 2 1 3 30 30 H 1.09002 * 109.47444 * 119.99976 * 2 1 3 31 31 H 1.08997 * 109.46581 * 59.99932 * 3 2 1 32 32 H 1.09000 * 109.46543 * 299.99633 * 3 2 1 33 33 H 1.07995 * 119.78223 * 359.95331 * 5 4 3 34 34 H 1.08004 * 119.96318 * 179.97438 * 6 5 4 35 35 H 0.97004 * 119.99986 * 185.65830 * 8 7 6 36 36 H 0.96996 * 120.00309 * 5.66175 * 8 7 6 37 37 H 1.09005 * 109.46800 * 299.99816 * 13 12 10 38 38 H 1.09003 * 109.47036 * 59.99701 * 13 12 10 39 39 H 1.09000 * 109.46760 * 184.99448 * 14 13 12 40 40 H 1.08997 * 109.47305 * 305.00022 * 14 13 12 41 41 H 1.08996 * 109.47549 * 300.00089 * 16 15 14 42 42 H 1.09000 * 109.47046 * 59.99925 * 16 15 14 43 43 H 0.97006 * 120.00305 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.04011 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2369 1.4423 -1.2018 6 6 5.6163 1.4427 -1.2160 7 6 6.3250 1.4440 -0.0207 8 7 7.7132 1.4439 -0.0324 9 6 5.6293 1.4442 1.1989 10 6 6.3677 1.4460 2.4734 11 8 7.5787 1.3445 2.4741 12 8 5.7004 1.5603 3.6386 13 6 6.4927 1.5553 4.8554 14 6 5.5683 1.6940 6.0666 15 8 4.7273 0.5423 6.1583 16 6 3.8207 0.5711 7.2625 17 6 2.9877 -0.6847 7.2613 18 1 3.1360 -1.4305 6.4944 19 6 2.0361 -0.8816 8.2394 20 7 1.8550 0.0267 9.1731 21 14 1.0040 -2.4386 8.2384 22 1 1.6865 -3.4854 9.0407 23 1 -0.3271 -2.1505 8.8306 24 1 0.8320 -2.9176 6.8434 25 6 4.2313 1.4372 1.1958 26 1 -0.3633 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6908 1.4414 -2.1335 34 1 6.1461 1.4422 -2.1572 35 1 8.2052 1.3619 0.7996 36 1 8.1912 1.5259 -0.8724 37 1 7.0455 0.6184 4.9251 38 1 7.1935 2.3901 4.8361 39 1 6.1676 1.7795 6.9730 40 1 4.9519 2.5858 5.9530 41 1 4.3839 0.6331 8.1936 42 1 3.1681 1.4397 7.1741 43 1 1.1852 -0.1116 9.8610 44 1 3.6886 1.4327 2.1295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815192670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:43 Heat of formation + Delta-G solvation = -127.112372 kcal Electronic energy + Delta-G solvation = -24683.439048 eV Core-core repulsion = 20986.088889 eV Total energy + Delta-G solvation = -3697.350159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66220 -39.12606 -37.12357 -36.30301 -35.52771 -33.62892 -32.77068 -31.60807 -29.99857 -29.60736 -26.93473 -25.76398 -24.44771 -22.71334 -22.33080 -21.91488 -21.39072 -20.31792 -17.80111 -17.18263 -16.89468 -16.64701 -16.44759 -16.24553 -15.31910 -15.09186 -14.69211 -14.63042 -14.32216 -13.98717 -13.93929 -13.72639 -13.44050 -13.21305 -12.81452 -12.70045 -12.44933 -12.05667 -11.93647 -11.66319 -11.42997 -11.38451 -11.05828 -10.91830 -10.84097 -10.74683 -10.66377 -10.43206 -10.36211 -10.23709 -10.03172 -9.13571 -9.12054 -8.87307 -8.21029 -7.62610 -6.11564 -4.13172 0.77339 1.47585 2.59419 2.83266 3.30627 3.35651 3.41321 3.75958 3.77907 4.32968 4.60624 4.71700 4.73325 4.81032 4.98420 5.09675 5.16861 5.23587 5.25148 5.32001 5.33857 5.46474 5.51048 5.61048 5.77389 5.82772 5.86182 5.88740 5.92636 6.02023 6.04141 6.11687 6.15110 6.20311 6.30751 6.49695 6.61391 6.76339 7.05680 7.30386 7.40053 7.72790 7.78664 7.93547 8.12906 8.52792 8.99538 9.51675 10.99997 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003732 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.250752 B = 7501.754440 C = 9731.238536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.072 4.072 4 C -0.160 4.160 5 C -0.029 4.029 6 C -0.218 4.218 7 C 0.280 3.720 8 N -0.859 5.859 9 C -0.215 4.215 10 C 0.522 3.478 11 O -0.535 6.535 12 O -0.333 6.333 13 C 0.075 3.925 14 C 0.062 3.938 15 O -0.390 6.390 16 C 0.194 3.806 17 C -0.514 4.514 18 H 0.067 0.933 19 C 0.057 3.943 20 N -0.899 5.899 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.003 4.003 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.416 0.584 36 H 0.393 0.607 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.007 0.993 43 H 0.264 0.736 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 5.449 -21.591 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.109 4.109 4 C -0.162 4.162 5 C -0.048 4.048 6 C -0.241 4.241 7 C 0.169 3.831 8 N -0.405 5.405 9 C -0.222 4.222 10 C 0.371 3.629 11 O -0.428 6.428 12 O -0.248 6.248 13 C 0.001 3.999 14 C -0.016 4.016 15 O -0.310 6.310 16 C 0.120 3.880 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.144 4.144 20 N -0.538 5.538 21 Si 0.734 3.266 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.021 4.021 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.258 0.742 36 H 0.221 0.779 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.954 5.300 -21.412 22.848 hybrid contribution 0.002 -0.527 0.397 0.660 sum 5.956 4.772 -21.016 22.359 Atomic orbital electron populations 1.21788 0.95862 1.01680 1.01740 1.21558 0.95582 0.96348 1.02462 1.20511 0.90364 0.97269 1.02750 1.19591 0.96048 1.08094 0.92481 1.20988 0.93254 0.92942 0.97643 1.20524 0.94456 1.13374 0.95755 1.17698 0.84539 0.88709 0.92163 1.43428 1.03446 1.79816 1.13851 1.18497 0.93833 1.21210 0.88622 1.21001 0.85479 0.71756 0.84696 1.90422 1.15612 1.49506 1.87239 1.86662 1.41043 1.82604 1.14464 1.23228 0.93265 1.02756 0.80610 1.22322 0.93597 0.91586 0.94107 1.87922 1.52085 1.38624 1.52404 1.20235 0.86912 0.97730 0.83097 1.21047 1.18156 1.03995 1.12068 0.91505 1.24936 0.97072 0.97344 0.95069 1.69959 1.34545 1.34436 1.14873 0.86343 0.79203 0.82531 0.78475 1.20473 1.21048 1.19554 1.21262 0.91811 0.90150 0.98897 0.92410 0.93047 0.92790 0.92213 0.91423 0.90849 0.91422 0.85750 0.85545 0.74191 0.77934 0.90449 0.90423 0.91927 0.93161 0.97653 0.97476 0.92638 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 3 C -0.07 -0.69 5.33 -27.88 -0.15 -0.84 16 4 C -0.16 -1.77 5.13 -104.67 -0.54 -2.31 16 5 C -0.03 -0.28 9.68 -39.54 -0.38 -0.66 16 6 C -0.22 -2.14 9.88 -39.42 -0.39 -2.53 16 7 C 0.28 3.37 6.76 -83.61 -0.57 2.81 16 8 N -0.86 -9.04 8.93 32.55 0.29 -8.75 16 9 C -0.22 -3.05 5.89 -104.82 -0.62 -3.67 16 10 C 0.52 8.42 7.87 34.41 0.27 8.69 16 11 O -0.54 -8.78 13.44 -19.28 -0.26 -9.04 16 12 O -0.33 -5.79 9.46 -43.46 -0.41 -6.20 16 13 C 0.08 1.22 5.85 37.16 0.22 1.43 16 14 C 0.06 1.13 6.33 37.16 0.24 1.37 16 15 O -0.39 -9.52 10.30 -38.80 -0.40 -9.92 16 16 C 0.19 5.33 5.69 36.01 0.20 5.53 16 17 C -0.51 -15.20 9.43 -34.44 -0.32 -15.53 16 18 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.00 -0.03 9.25 -39.18 -0.36 -0.40 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.42 5.08 5.34 -40.94 -0.22 4.86 16 36 H 0.39 2.86 8.84 -40.82 -0.36 2.50 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 44 H 0.14 1.99 7.62 -52.49 -0.40 1.59 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -32.73 374.41 -8.57 -41.29 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.86 Total: 3.17 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.29 Total: -6.95 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 1.03 Total: -34.83 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.07 Total: -25.16 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.73 -8.57 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815192670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.818 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds