Wall clock time and date at job start Fri Apr 10 2020 21:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47011 * 179.97438 * 3 2 1 5 5 C 1.38628 * 119.81922 * 90.00057 * 4 3 2 6 6 C 1.37953 * 120.43269 * 179.97438 * 5 4 3 7 7 C 1.38959 * 120.07358 * 359.97438 * 6 5 4 8 8 N 1.38827 * 120.18178 * 179.97438 * 7 6 5 9 9 C 1.40409 * 119.63714 * 0.02562 * 7 6 5 10 10 C 1.47290 * 120.21182 * 180.02562 * 9 7 6 11 11 O 1.21519 * 120.00088 * 354.39120 * 10 9 7 12 12 O 1.34766 * 119.99920 * 174.38913 * 10 9 7 13 13 C 1.45202 * 117.00378 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47381 * 179.97438 * 13 12 10 15 15 O 1.42905 * 109.47066 * 64.99868 * 14 13 12 16 16 C 1.42895 * 114.00002 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47091 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00257 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99775 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00298 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99911 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47325 * 90.00139 * 21 19 17 23 23 H 1.48503 * 109.47396 * 209.99916 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00293 * 21 19 17 25 25 C 1.37726 * 119.81738 * 270.25925 * 4 3 2 26 26 H 1.08990 * 109.47386 * 300.00459 * 1 2 3 27 27 H 1.09004 * 109.46953 * 60.00184 * 1 2 3 28 28 H 1.09005 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47285 * 239.99941 * 2 1 3 30 30 H 1.09002 * 109.47444 * 119.99976 * 2 1 3 31 31 H 1.08997 * 109.46581 * 59.99932 * 3 2 1 32 32 H 1.09000 * 109.46543 * 299.99633 * 3 2 1 33 33 H 1.07995 * 119.78223 * 359.95331 * 5 4 3 34 34 H 1.08004 * 119.96318 * 179.97438 * 6 5 4 35 35 H 0.97004 * 119.99986 * 185.65830 * 8 7 6 36 36 H 0.96996 * 120.00309 * 5.66175 * 8 7 6 37 37 H 1.09005 * 109.46800 * 299.99816 * 13 12 10 38 38 H 1.09003 * 109.47036 * 59.99701 * 13 12 10 39 39 H 1.09000 * 109.46760 * 184.99448 * 14 13 12 40 40 H 1.08997 * 109.47305 * 305.00022 * 14 13 12 41 41 H 1.08996 * 109.47549 * 300.00089 * 16 15 14 42 42 H 1.09000 * 109.47046 * 59.99925 * 16 15 14 43 43 H 0.97006 * 120.00305 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.04011 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2369 1.4423 -1.2018 6 6 5.6163 1.4427 -1.2160 7 6 6.3250 1.4440 -0.0207 8 7 7.7132 1.4439 -0.0324 9 6 5.6293 1.4442 1.1989 10 6 6.3677 1.4460 2.4734 11 8 7.5787 1.3445 2.4741 12 8 5.7004 1.5603 3.6386 13 6 6.4927 1.5553 4.8554 14 6 5.5683 1.6940 6.0666 15 8 4.7273 0.5423 6.1583 16 6 3.8207 0.5711 7.2625 17 6 2.9877 -0.6847 7.2613 18 1 3.1360 -1.4305 6.4944 19 6 2.0361 -0.8816 8.2394 20 7 1.8550 0.0267 9.1731 21 14 1.0040 -2.4386 8.2384 22 1 1.6865 -3.4854 9.0407 23 1 -0.3271 -2.1505 8.8306 24 1 0.8320 -2.9176 6.8434 25 6 4.2313 1.4372 1.1958 26 1 -0.3633 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6908 1.4414 -2.1335 34 1 6.1461 1.4422 -2.1572 35 1 8.2052 1.3619 0.7996 36 1 8.1912 1.5259 -0.8724 37 1 7.0455 0.6184 4.9251 38 1 7.1935 2.3901 4.8361 39 1 6.1676 1.7795 6.9730 40 1 4.9519 2.5858 5.9530 41 1 4.3839 0.6331 8.1936 42 1 3.1681 1.4397 7.1741 43 1 1.1852 -0.1116 9.8610 44 1 3.6886 1.4327 2.1295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815192670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:42 Heat of formation + Delta-G solvation = -146.526674 kcal Electronic energy + Delta-G solvation = -24684.280915 eV Core-core repulsion = 20986.088889 eV Total energy + Delta-G solvation = -3698.192026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79226 -40.14096 -38.74944 -37.66380 -36.51334 -34.96770 -34.45493 -32.63442 -31.41145 -30.51214 -29.03145 -26.59918 -25.52636 -24.56405 -23.79016 -22.95530 -22.43090 -21.28665 -18.93649 -18.70812 -18.13758 -17.94575 -17.76467 -17.52636 -17.05353 -16.40429 -16.28208 -15.88260 -15.60119 -15.12729 -14.86277 -14.80945 -14.66571 -14.27621 -14.13520 -13.79512 -13.75739 -13.39819 -13.22868 -12.93142 -12.82906 -12.71756 -12.57657 -12.45369 -12.16584 -12.02513 -11.84176 -11.77938 -11.48848 -11.33176 -11.29482 -11.23633 -10.90986 -10.29425 -10.02700 -8.49193 -8.33405 -6.45687 -0.19903 0.59691 1.39374 1.42007 1.49380 1.54257 1.64567 2.33663 2.83822 2.94491 3.00507 3.03955 3.59982 3.86212 3.89597 3.93550 4.07205 4.19134 4.30142 4.36233 4.39483 4.42260 4.50176 4.52446 4.62884 4.73759 4.83172 4.84376 4.98516 5.06604 5.08534 5.14894 5.16038 5.26032 5.28906 5.36375 5.39429 5.52958 5.53192 5.75404 5.91031 5.93588 6.42298 6.48387 6.69047 6.77908 6.95864 7.25932 8.78866 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003732 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.250752 B = 7501.754440 C = 9731.238536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.069 4.069 4 C -0.161 4.161 5 C -0.019 4.019 6 C -0.209 4.209 7 C 0.273 3.727 8 N -0.853 5.853 9 C -0.244 4.244 10 C 0.514 3.486 11 O -0.545 6.545 12 O -0.353 6.353 13 C 0.079 3.921 14 C 0.054 3.946 15 O -0.410 6.410 16 C 0.208 3.792 17 C -0.551 4.551 18 H 0.058 0.942 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.266 1.266 25 C -0.024 4.024 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.409 0.591 36 H 0.409 0.591 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.055 0.945 41 H -0.007 1.007 42 H -0.011 1.011 43 H 0.272 0.728 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 5.055 -24.230 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.106 4.106 4 C -0.163 4.163 5 C -0.038 4.038 6 C -0.231 4.231 7 C 0.161 3.839 8 N -0.399 5.399 9 C -0.251 4.251 10 C 0.365 3.635 11 O -0.439 6.439 12 O -0.269 6.269 13 C 0.005 3.995 14 C -0.023 4.023 15 O -0.330 6.330 16 C 0.134 3.866 17 C -0.589 4.589 18 H 0.077 0.923 19 C -0.189 4.189 20 N -0.568 5.568 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.196 1.196 24 H -0.190 1.190 25 C -0.043 4.043 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.249 0.751 36 H 0.240 0.760 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.010 0.990 42 H 0.007 0.993 43 H 0.081 0.919 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.643 4.924 -24.077 25.215 hybrid contribution 0.169 -0.332 1.137 1.197 sum 5.812 4.592 -22.940 24.106 Atomic orbital electron populations 1.21782 0.95194 1.01848 1.02144 1.21535 0.96172 0.96386 1.01740 1.20528 0.89535 0.97173 1.03413 1.19790 0.96755 1.07424 0.92346 1.21400 0.93384 0.90765 0.98214 1.20937 0.94713 1.11425 0.96046 1.17934 0.85159 0.88643 0.92191 1.43388 1.03055 1.79106 1.14386 1.18581 0.94207 1.23791 0.88490 1.21453 0.85665 0.71564 0.84858 1.90404 1.15799 1.50279 1.87383 1.86657 1.41964 1.83069 1.15236 1.23216 0.92768 1.03829 0.79664 1.22645 0.93490 0.89803 0.96329 1.87870 1.52423 1.41467 1.51232 1.19871 0.86872 0.96436 0.83465 1.21367 1.19813 1.04872 1.12802 0.92347 1.25914 0.97875 1.00992 0.94121 1.70055 1.35074 1.36329 1.15301 0.85220 0.77617 0.77982 0.78843 1.19234 1.19641 1.19038 1.21161 0.91784 0.92194 0.99123 0.93495 0.91138 0.92774 0.90912 0.94146 0.92152 0.88767 0.82030 0.82102 0.75102 0.76008 0.90975 0.87237 0.89794 0.92646 0.98967 0.99288 0.91944 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.92 16 2 C -0.12 -2.31 5.92 30.59 0.18 -2.13 16 3 C -0.07 -1.27 5.33 29.85 0.16 -1.11 16 4 C -0.16 -3.41 5.13 -19.89 -0.10 -3.51 16 5 C -0.02 -0.30 9.68 22.30 0.22 -0.08 16 6 C -0.21 -3.41 9.88 22.37 0.22 -3.19 16 7 C 0.27 6.22 6.76 38.74 0.26 6.48 16 8 N -0.85 -16.79 8.93 -50.93 -0.45 -17.25 16 9 C -0.24 -7.07 5.89 -19.99 -0.12 -7.19 16 10 C 0.51 17.23 7.87 70.20 0.55 17.78 16 11 O -0.55 -18.20 13.44 19.77 0.27 -17.93 16 12 O -0.35 -12.93 9.46 -54.11 -0.51 -13.44 16 13 C 0.08 2.60 5.85 71.98 0.42 3.02 16 14 C 0.05 2.05 6.33 71.98 0.46 2.50 16 15 O -0.41 -20.82 10.30 -145.57 -1.50 -22.32 16 16 C 0.21 11.91 5.69 71.24 0.41 12.32 16 17 C -0.55 -33.53 9.43 25.60 0.24 -33.29 16 18 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 21 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 C -0.02 -0.66 9.25 22.53 0.21 -0.45 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.41 9.77 5.34 -94.64 -0.51 9.27 16 36 H 0.41 5.04 8.84 -92.71 -0.82 4.22 16 37 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.11 2.90 8.14 -2.39 -0.02 2.89 16 39 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 44 H 0.12 3.69 7.62 -2.91 -0.02 3.66 16 Total: -1.00 -72.62 374.41 4.07 -68.54 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.32 Total: 20.95 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 4.28 Total: -9.74 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -0.17 Total: -72.96 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.75 Total: -53.69 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -72.62 4.07 -68.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815192670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.983 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds