Wall clock time and date at job start Fri Apr 10 2020 21:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.50697 * 109.47466 * 300.00004 * 4 2 1 7 7 O 1.20822 * 120.00115 * 240.00066 * 6 4 2 8 8 O 1.34234 * 119.99749 * 59.99914 * 6 4 2 9 9 C 1.45203 * 117.00028 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47034 * 179.97438 * 9 8 6 11 11 O 1.42899 * 109.46977 * 65.00401 * 10 9 8 12 12 C 1.42902 * 113.99825 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46915 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99694 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00191 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00009 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46747 * 59.99716 * 17 15 13 19 19 H 1.48493 * 109.47461 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47110 * 299.99985 * 17 15 13 21 21 C 1.50699 * 109.47078 * 180.02562 * 4 2 1 22 22 C 1.38678 * 120.41749 * 239.72150 * 21 4 2 23 23 C 1.38632 * 118.41655 * 179.78395 * 22 21 4 24 24 C 1.38226 * 119.16180 * 0.51186 * 23 22 21 25 25 N 1.31855 * 120.76537 * 359.72741 * 24 23 22 26 26 C 1.31886 * 121.72421 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09004 * 109.47093 * 300.00565 * 9 8 6 35 35 H 1.09002 * 109.46827 * 59.99933 * 9 8 6 36 36 H 1.09003 * 109.46686 * 184.99780 * 10 9 8 37 37 H 1.08994 * 109.47206 * 305.00045 * 10 9 8 38 38 H 1.08997 * 109.47511 * 299.99915 * 12 11 10 39 39 H 1.09005 * 109.47048 * 60.00111 * 12 11 10 40 40 H 0.97001 * 119.99450 * 179.97438 * 16 15 13 41 41 H 1.07991 * 120.79504 * 0.02616 * 22 21 4 42 42 H 1.08007 * 120.41558 * 180.22309 * 23 22 21 43 43 H 1.08004 * 119.61814 * 179.75157 * 24 23 22 44 44 H 1.07990 * 119.61822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 1.5376 -2.1420 -1.2494 7 8 2.3227 -3.0603 -1.2495 8 8 0.2179 -2.3872 -1.2493 9 6 -0.1939 -3.7796 -1.2500 10 6 -1.7218 -3.8596 -1.2492 11 8 -2.2278 -3.3152 -2.4697 12 6 -3.6530 -3.3425 -2.5714 13 6 -4.0738 -2.7481 -3.8907 14 1 -3.3277 -2.3853 -4.5822 15 6 -5.4115 -2.6664 -4.2146 16 7 -6.3202 -3.1077 -3.3724 17 14 -5.9334 -1.9289 -5.8497 18 1 -5.3429 -2.7189 -6.9599 19 1 -7.4142 -1.9573 -5.9555 20 1 -5.4575 -0.5247 -5.9337 21 6 3.5469 -0.7218 -1.2490 22 6 4.2495 -0.1290 -2.2874 23 6 5.6349 -0.1495 -2.2428 24 6 6.2655 -0.7652 -1.1780 25 7 5.5650 -1.3234 -0.2103 26 6 4.2462 -1.3176 -0.2168 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 0.1958 -4.2733 -2.1403 35 1 0.1960 -4.2742 -0.3603 36 1 -2.0310 -4.9011 -1.1602 37 1 -2.1149 -3.2906 -0.4069 38 1 -4.0020 -4.3733 -2.5100 39 1 -4.0866 -2.7629 -1.7564 40 1 -7.2613 -3.0499 -3.6002 41 1 3.7297 0.3410 -3.1091 42 1 6.2142 0.3057 -3.0326 43 1 7.3445 -0.7891 -1.1379 44 1 3.7064 -1.7854 0.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815244088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:58:00 Heat of formation + Delta-G solvation = -111.642008 kcal Electronic energy + Delta-G solvation = -25207.766925 eV Core-core repulsion = 21511.087611 eV Total energy + Delta-G solvation = -3696.679313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17239 -39.92001 -37.25582 -36.56905 -36.07538 -32.80260 -32.75184 -31.65359 -30.27778 -28.09422 -27.10024 -26.88678 -23.90257 -23.36452 -22.47835 -22.18904 -21.28579 -20.11230 -17.86704 -17.37705 -16.95086 -16.54458 -16.33381 -16.05166 -15.57280 -15.38138 -14.67933 -14.50724 -14.35089 -14.23448 -13.65407 -13.61595 -13.30242 -13.22350 -12.90754 -12.78973 -12.53531 -12.24382 -12.16577 -11.98667 -11.49607 -11.19422 -11.09652 -10.94411 -10.88302 -10.86471 -10.77933 -10.36860 -10.28502 -10.08411 -9.96616 -9.65715 -9.19654 -9.16904 -8.89815 -8.23948 -6.14330 -4.16229 0.84238 1.06174 2.20489 2.71145 3.29951 3.32831 3.36482 3.62422 4.07299 4.29495 4.33170 4.40910 4.59955 4.66373 4.71885 4.75948 4.83716 4.87103 5.09858 5.18215 5.20562 5.22217 5.30245 5.38236 5.43840 5.54558 5.57519 5.71853 5.82415 5.85302 5.85947 5.90489 5.94058 5.97886 6.04724 6.15400 6.43947 6.46499 6.58433 7.02612 7.37063 7.74836 7.75817 7.80731 8.09918 8.49595 8.95927 9.48596 10.97136 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.002824 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.117011 B = 9911.506512 C =10129.542726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.035 4.035 5 H 0.120 0.880 6 C 0.465 3.535 7 O -0.508 6.508 8 O -0.329 6.329 9 C 0.070 3.930 10 C 0.062 3.938 11 O -0.390 6.390 12 C 0.195 3.805 13 C -0.516 4.516 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.120 4.120 22 C -0.064 4.064 23 C -0.175 4.175 24 C 0.096 3.904 25 N -0.485 5.485 26 C 0.133 3.867 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.265 0.735 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.540 7.730 7.251 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.055 4.055 5 H 0.138 0.862 6 C 0.308 3.692 7 O -0.397 6.397 8 O -0.245 6.245 9 C -0.004 4.004 10 C -0.015 4.015 11 O -0.310 6.310 12 C 0.121 3.879 13 C -0.554 4.554 14 H 0.084 0.916 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.122 4.122 22 C -0.090 4.090 23 C -0.195 4.195 24 C -0.060 4.060 25 N -0.194 5.194 26 C -0.024 4.024 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.172 0.828 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 21.095 7.072 7.819 23.583 hybrid contribution -1.017 0.397 -1.429 1.798 sum 20.078 7.470 6.390 22.355 Atomic orbital electron populations 1.22131 0.92815 1.04568 1.02343 1.21116 0.97548 0.96371 0.95055 1.21830 1.00836 0.94929 1.02544 1.20087 0.91175 0.91000 1.03189 0.86202 1.23370 0.81358 0.91931 0.72554 1.90673 1.56959 1.46617 1.45411 1.86692 1.24188 1.30963 1.82665 1.23254 0.95339 0.79221 1.02577 1.22314 0.90418 0.98304 0.90505 1.87917 1.25686 1.82546 1.34882 1.20225 0.74246 0.95922 0.97499 1.21003 0.91977 1.40355 1.02066 0.91587 1.24945 0.96085 0.95592 0.97827 1.69950 1.01155 1.46659 1.36005 0.86391 0.77215 0.79737 0.83113 1.20015 1.21133 1.19968 1.20297 0.94525 1.00613 0.96745 1.21499 0.94317 0.96227 0.96948 1.22102 0.95034 1.01958 1.00365 1.22795 1.00379 0.93147 0.89720 1.67726 1.08096 1.16658 1.26874 1.22497 0.89719 0.93575 0.96659 0.91788 0.89897 0.92379 0.90658 0.91962 0.92768 0.92073 0.90535 0.90419 0.92029 0.93188 0.97665 0.97489 0.92554 0.84594 0.84658 0.82830 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.67 37.16 0.32 -1.43 16 2 C -0.08 -0.78 2.32 -90.62 -0.21 -0.99 16 3 C -0.14 -1.15 8.95 37.16 0.33 -0.82 16 4 C -0.03 -0.38 2.11 -92.93 -0.20 -0.57 16 5 H 0.12 1.19 7.93 -51.93 -0.41 0.77 16 6 C 0.47 6.56 7.07 36.00 0.25 6.82 16 7 O -0.51 -8.27 14.87 -18.75 -0.28 -8.55 16 8 O -0.33 -5.09 7.11 -42.03 -0.30 -5.39 16 9 C 0.07 1.07 5.84 37.16 0.22 1.28 16 10 C 0.06 1.10 6.33 37.16 0.24 1.34 16 11 O -0.39 -9.22 10.30 -38.80 -0.40 -9.62 16 12 C 0.20 5.25 5.69 36.01 0.20 5.45 16 13 C -0.52 -15.02 9.43 -34.44 -0.32 -15.34 16 14 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 17 Si 0.91 21.60 29.54 -169.99 -5.02 16.57 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.12 -1.29 3.14 -104.48 -0.33 -1.62 16 22 C -0.06 -0.59 9.81 -39.27 -0.39 -0.97 16 23 C -0.17 -1.45 10.11 -39.44 -0.40 -1.85 16 24 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 25 N -0.49 -5.86 10.36 -13.25 -0.14 -6.00 16 26 C 0.13 1.57 9.13 -17.55 -0.16 1.41 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.06 5.33 -51.93 -0.28 0.78 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.69 7.41 -51.93 -0.38 0.31 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.44 7.22 -51.93 -0.37 0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 35 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.14 0.97 8.00 -52.49 -0.42 0.55 16 42 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 43 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.15 1.70 7.53 -52.49 -0.40 1.31 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -33.51 369.09 -7.45 -40.96 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.88 Total: -2.67 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.73 Total: -5.05 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.60 Total: -31.82 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.98 Total: -23.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.51 -7.45 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815244088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.680 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds