Wall clock time and date at job start Fri Apr 10 2020 21:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.50697 * 109.47466 * 300.00004 * 4 2 1 7 7 O 1.20822 * 120.00115 * 240.00066 * 6 4 2 8 8 O 1.34234 * 119.99749 * 59.99914 * 6 4 2 9 9 C 1.45203 * 117.00028 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47034 * 179.97438 * 9 8 6 11 11 O 1.42899 * 109.46977 * 65.00401 * 10 9 8 12 12 C 1.42902 * 113.99825 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46915 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99694 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00191 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00009 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46747 * 59.99716 * 17 15 13 19 19 H 1.48493 * 109.47461 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47110 * 299.99985 * 17 15 13 21 21 C 1.50699 * 109.47078 * 180.02562 * 4 2 1 22 22 C 1.38678 * 120.41749 * 239.72150 * 21 4 2 23 23 C 1.38632 * 118.41655 * 179.78395 * 22 21 4 24 24 C 1.38226 * 119.16180 * 0.51186 * 23 22 21 25 25 N 1.31855 * 120.76537 * 359.72741 * 24 23 22 26 26 C 1.31886 * 121.72421 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09004 * 109.47093 * 300.00565 * 9 8 6 35 35 H 1.09002 * 109.46827 * 59.99933 * 9 8 6 36 36 H 1.09003 * 109.46686 * 184.99780 * 10 9 8 37 37 H 1.08994 * 109.47206 * 305.00045 * 10 9 8 38 38 H 1.08997 * 109.47511 * 299.99915 * 12 11 10 39 39 H 1.09005 * 109.47048 * 60.00111 * 12 11 10 40 40 H 0.97001 * 119.99450 * 179.97438 * 16 15 13 41 41 H 1.07991 * 120.79504 * 0.02616 * 22 21 4 42 42 H 1.08007 * 120.41558 * 180.22309 * 23 22 21 43 43 H 1.08004 * 119.61814 * 179.75157 * 24 23 22 44 44 H 1.07990 * 119.61822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 1.5376 -2.1420 -1.2494 7 8 2.3227 -3.0603 -1.2495 8 8 0.2179 -2.3872 -1.2493 9 6 -0.1939 -3.7796 -1.2500 10 6 -1.7218 -3.8596 -1.2492 11 8 -2.2278 -3.3152 -2.4697 12 6 -3.6530 -3.3425 -2.5714 13 6 -4.0738 -2.7481 -3.8907 14 1 -3.3277 -2.3853 -4.5822 15 6 -5.4115 -2.6664 -4.2146 16 7 -6.3202 -3.1077 -3.3724 17 14 -5.9334 -1.9289 -5.8497 18 1 -5.3429 -2.7189 -6.9599 19 1 -7.4142 -1.9573 -5.9555 20 1 -5.4575 -0.5247 -5.9337 21 6 3.5469 -0.7218 -1.2490 22 6 4.2495 -0.1290 -2.2874 23 6 5.6349 -0.1495 -2.2428 24 6 6.2655 -0.7652 -1.1780 25 7 5.5650 -1.3234 -0.2103 26 6 4.2462 -1.3176 -0.2168 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 0.1958 -4.2733 -2.1403 35 1 0.1960 -4.2742 -0.3603 36 1 -2.0310 -4.9011 -1.1602 37 1 -2.1149 -3.2906 -0.4069 38 1 -4.0020 -4.3733 -2.5100 39 1 -4.0866 -2.7629 -1.7564 40 1 -7.2613 -3.0499 -3.6002 41 1 3.7297 0.3410 -3.1091 42 1 6.2142 0.3057 -3.0326 43 1 7.3445 -0.7891 -1.1379 44 1 3.7064 -1.7854 0.5932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815244088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:59 Heat of formation + Delta-G solvation = -131.223579 kcal Electronic energy + Delta-G solvation = -25208.616046 eV Core-core repulsion = 21511.087611 eV Total energy + Delta-G solvation = -3697.528434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14991 -40.85045 -38.79068 -37.62056 -37.35877 -34.94110 -33.51211 -32.40018 -31.75567 -29.29516 -28.63277 -27.89077 -24.67025 -24.63653 -24.28775 -23.34842 -22.33700 -21.00723 -18.94773 -18.69312 -18.11478 -18.05203 -17.64935 -17.11037 -16.88074 -16.48031 -16.30223 -16.12719 -15.40389 -15.22609 -14.85983 -14.54227 -14.37683 -14.23667 -13.98675 -13.80115 -13.69132 -13.49559 -13.22536 -12.98802 -12.94101 -12.89724 -12.69039 -12.45743 -12.11752 -11.98954 -11.85822 -11.74858 -11.50980 -11.42630 -11.28589 -10.88519 -10.73695 -10.42183 -10.26632 -9.94798 -8.31961 -6.44159 0.09079 0.33595 1.09163 1.40761 1.45085 1.53528 1.64246 2.34540 2.85896 3.02104 3.05999 3.27557 3.48305 3.64700 3.76629 3.91275 3.92746 4.04353 4.05685 4.09886 4.18568 4.33760 4.40857 4.45492 4.49914 4.60195 4.66354 4.67909 4.82306 4.85580 4.85979 5.02494 5.05470 5.16630 5.17997 5.19713 5.25885 5.36998 5.40405 5.54339 5.58279 5.75623 5.95398 6.49854 6.66034 6.79679 7.01255 7.27431 8.79966 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.002824 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.117011 B = 9911.506512 C =10129.542726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.028 4.028 5 H 0.132 0.868 6 C 0.465 3.535 7 O -0.533 6.533 8 O -0.340 6.340 9 C 0.074 3.926 10 C 0.056 3.944 11 O -0.407 6.407 12 C 0.209 3.791 13 C -0.550 4.550 14 H 0.061 0.939 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.981 3.019 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.264 1.264 21 C -0.128 4.128 22 C -0.070 4.070 23 C -0.167 4.167 24 C 0.086 3.914 25 N -0.514 5.514 26 C 0.114 3.886 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.058 0.942 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.271 0.729 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.552 9.270 6.066 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.094 4.094 3 C -0.195 4.195 4 C -0.048 4.048 5 H 0.149 0.851 6 C 0.309 3.691 7 O -0.422 6.422 8 O -0.256 6.256 9 C 0.000 4.000 10 C -0.021 4.021 11 O -0.327 6.327 12 C 0.134 3.866 13 C -0.588 4.588 14 H 0.079 0.921 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.804 3.196 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.189 1.189 21 C -0.130 4.130 22 C -0.095 4.095 23 C -0.186 4.186 24 C -0.070 4.070 25 N -0.223 5.223 26 C -0.043 4.043 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.080 0.920 41 H 0.176 0.824 42 H 0.187 0.813 43 H 0.197 0.803 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 22.121 8.610 6.656 24.653 hybrid contribution -1.242 -0.115 -0.995 1.595 sum 20.879 8.495 5.661 23.241 Atomic orbital electron populations 1.22094 0.93831 1.03169 1.02593 1.21076 0.96464 0.97400 0.94474 1.21773 1.00771 0.93611 1.03303 1.20170 0.91522 0.88846 1.04262 0.85054 1.24036 0.80500 0.93111 0.71434 1.90657 1.57257 1.47692 1.46613 1.86720 1.25253 1.30785 1.82866 1.23181 0.93516 0.79760 1.03513 1.22613 0.91921 0.99088 0.88500 1.87860 1.23635 1.83276 1.37942 1.19849 0.76027 0.94363 0.96318 1.21353 0.92711 1.41612 1.03079 0.92101 1.25932 0.95776 0.95492 1.01889 1.70055 1.01703 1.47088 1.38012 0.85265 0.77200 0.79177 0.77981 1.19158 1.20005 1.18872 1.20285 0.94161 1.01345 0.97232 1.21862 0.95018 0.95764 0.96901 1.22474 0.94875 1.00732 1.00500 1.23332 1.01656 0.92572 0.89463 1.67697 1.08315 1.17898 1.28423 1.22449 0.90033 0.94602 0.97189 0.92423 0.92018 0.91232 0.90636 0.91123 0.92739 0.91414 0.91378 0.87634 0.90422 0.92363 0.99265 0.99186 0.92009 0.82384 0.81320 0.80277 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.67 71.98 0.62 -2.79 16 2 C -0.08 -1.38 2.32 -10.79 -0.03 -1.41 16 3 C -0.14 -1.97 8.95 71.98 0.64 -1.33 16 4 C -0.03 -0.60 2.11 -12.29 -0.03 -0.62 16 5 H 0.13 2.44 7.93 -2.39 -0.02 2.42 16 6 C 0.46 13.13 7.07 71.23 0.50 13.64 16 7 O -0.53 -17.46 14.87 21.98 0.33 -17.13 16 8 O -0.34 -10.60 7.11 -48.81 -0.35 -10.94 16 9 C 0.07 2.26 5.84 71.98 0.42 2.68 16 10 C 0.06 1.98 6.33 71.98 0.46 2.43 16 11 O -0.41 -19.62 10.30 -145.57 -1.50 -21.12 16 12 C 0.21 11.57 5.69 71.24 0.41 11.97 16 13 C -0.55 -32.48 9.43 25.60 0.24 -32.24 16 14 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 15 C 0.01 0.45 5.46 84.65 0.46 0.91 16 16 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 17 Si 0.98 43.79 29.54 68.60 2.03 45.82 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 C -0.13 -2.64 3.14 -19.77 -0.06 -2.70 16 22 C -0.07 -1.13 9.81 22.47 0.22 -0.91 16 23 C -0.17 -2.30 10.11 22.36 0.23 -2.08 16 24 C 0.09 1.48 11.18 84.69 0.95 2.42 16 25 N -0.51 -12.18 10.36 -195.85 -2.03 -14.21 16 26 C 0.11 2.69 9.13 84.67 0.77 3.47 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.60 5.33 -2.39 -0.01 1.58 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.38 7.41 -2.39 -0.02 1.36 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.80 7.22 -2.39 -0.02 0.78 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 35 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 40 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.16 1.78 8.00 -2.92 -0.02 1.76 16 42 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.14 3.35 7.53 -2.92 -0.02 3.33 16 Total: -1.00 -72.69 369.09 5.55 -67.15 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.97 Total: 11.92 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.81 Total: -6.56 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.74 Total: -69.13 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -1.52 Total: -49.20 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.69 5.55 -67.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815244088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.078 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds