Wall clock time and date at job start Fri Apr 10 2020 21:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00086 * 2 1 4 4 C 1.38740 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94681 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05338 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94136 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46878 * 90.00026 * 7 6 5 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6 10 10 C 1.53009 * 109.47113 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47158 * 180.02562 * 10 9 8 12 12 O 1.21287 * 120.00127 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99963 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47170 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47626 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99380 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00571 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00175 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99593 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47244 * 90.00005 * 20 18 16 22 22 H 1.48498 * 109.46892 * 210.00151 * 20 18 16 23 23 H 1.48499 * 109.47059 * 330.00072 * 20 18 16 24 24 C 1.38261 * 120.11222 * 0.25270 * 6 5 4 25 25 C 1.38144 * 120.05633 * 359.45047 * 24 6 5 26 26 H 1.09000 * 109.47348 * 59.99680 * 1 2 3 27 27 H 1.08993 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47106 * 300.00137 * 1 2 3 29 29 H 1.07998 * 120.02343 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.97195 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47060 * 210.00157 * 7 6 5 32 32 H 1.09001 * 109.47380 * 330.00244 * 7 6 5 33 33 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 34 34 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 35 35 H 1.08997 * 109.46502 * 300.00085 * 10 9 8 36 36 H 1.08998 * 109.46733 * 60.00191 * 10 9 8 37 37 H 0.96995 * 119.99730 * 0.02562 * 13 11 10 38 38 H 1.09007 * 109.47857 * 300.00177 * 14 13 11 39 39 H 1.09004 * 109.47269 * 59.99983 * 14 13 11 40 40 H 1.08996 * 109.47412 * 300.00560 * 15 14 13 41 41 H 1.09004 * 109.47367 * 60.00215 * 15 14 13 42 42 H 0.97000 * 119.99699 * 180.02562 * 19 18 16 43 43 H 1.07999 * 119.97190 * 179.70663 * 24 6 5 44 44 H 1.08001 * 120.03140 * 180.25189 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 8 4.2018 5.4443 -1.3442 9 6 4.8480 6.7139 -1.4559 10 6 5.0260 7.0674 -2.9339 11 6 5.7080 8.4060 -3.0517 12 8 6.0206 9.0175 -2.0520 13 7 5.9707 8.9238 -4.2681 14 6 6.6332 10.2253 -4.3826 15 6 6.8124 10.5781 -5.8605 16 6 7.4945 11.9167 -5.9784 17 1 7.7728 12.4612 -5.0881 18 6 7.7633 12.4463 -7.2227 19 7 8.3590 13.6143 -7.3255 20 14 7.2813 11.5048 -8.7624 21 1 5.9065 11.8915 -9.1691 22 1 8.2308 11.8278 -9.8576 23 1 7.3236 10.0467 -8.4846 24 6 1.9212 3.6047 0.0080 25 6 1.2916 2.3751 0.0012 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.0208 0.3799 -0.0014 30 1 5.1346 2.5749 -0.0008 31 1 3.3584 5.7457 0.5177 32 1 4.9444 4.9376 0.5160 33 1 4.2377 7.4762 -0.9714 34 1 5.8241 6.6687 -0.9727 35 1 5.6360 6.3052 -3.4187 36 1 4.0498 7.1128 -3.4166 37 1 5.7204 8.4349 -5.0675 38 1 6.0230 10.9876 -3.8981 39 1 7.6092 10.1800 -3.8993 40 1 7.4228 9.8158 -6.3446 41 1 5.8366 10.6233 -6.3442 42 1 8.5478 13.9870 -8.2009 43 1 1.3343 4.5114 0.0140 44 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612061081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:58 Heat of formation + Delta-G solvation = -108.524277 kcal Electronic energy + Delta-G solvation = -23155.911186 eV Core-core repulsion = 19459.367068 eV Total energy + Delta-G solvation = -3696.544118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55336 -39.50637 -38.53515 -37.29431 -35.04398 -32.86172 -32.40164 -31.50521 -30.96253 -29.86305 -28.05729 -25.86451 -25.08248 -23.17027 -23.05230 -21.58931 -20.81456 -19.99868 -18.59110 -17.38218 -16.90766 -16.87858 -16.25118 -16.18621 -16.11341 -15.80988 -15.16775 -15.08094 -14.78413 -14.21702 -14.19954 -13.92094 -13.60359 -13.50144 -13.25021 -12.99648 -12.69774 -12.60088 -12.39001 -11.74732 -11.63268 -11.54189 -11.49535 -11.22741 -11.20062 -11.16316 -10.41223 -10.30127 -9.97922 -9.79988 -9.56314 -9.38191 -9.31708 -8.66186 -8.56849 -8.56030 -6.12240 -4.12539 0.93214 0.97868 2.82397 2.87890 3.05032 3.24542 3.32386 3.33477 3.47784 4.02409 4.34887 4.36721 4.45946 4.60314 4.61943 4.67527 4.80979 4.85759 4.94622 4.96729 4.99439 5.12204 5.20713 5.21422 5.23643 5.31972 5.46988 5.64009 5.68858 5.74064 5.84933 5.94518 6.09419 6.18406 6.24691 6.34240 6.53926 6.71833 6.94231 6.97822 7.11413 7.21404 7.65185 7.85471 8.41513 8.51796 8.91907 9.47829 11.00767 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.001685 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.316478 B =16616.224077 C =17138.546848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.125 4.125 7 C 0.108 3.892 8 O -0.386 6.386 9 C 0.078 3.922 10 C -0.140 4.140 11 C 0.510 3.490 12 O -0.551 6.551 13 N -0.725 5.725 14 C 0.129 3.871 15 C -0.023 4.023 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.058 4.058 25 C -0.211 4.211 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.265 0.735 43 H 0.127 0.873 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 -27.723 15.116 35.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.173 4.173 5 C -0.076 4.076 6 C -0.126 4.126 7 C 0.032 3.968 8 O -0.306 6.306 9 C 0.001 3.999 10 C -0.180 4.180 11 C 0.296 3.704 12 O -0.429 6.429 13 N -0.375 5.375 14 C 0.007 3.993 15 C -0.060 4.060 16 C -0.562 4.562 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.076 4.076 25 C -0.230 4.230 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.231 0.769 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.145 0.855 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.542 -27.420 15.539 35.141 hybrid contribution -0.545 -0.267 -1.182 1.328 sum -16.087 -27.687 14.357 35.092 Atomic orbital electron populations 1.23073 0.78246 1.04035 1.01487 1.86071 1.21530 1.26996 1.88596 1.19097 0.92442 0.84157 0.95819 1.20429 0.91368 0.98696 1.06854 1.20906 1.00060 0.90832 0.95803 1.19536 0.93555 0.94269 1.05221 1.21209 0.98905 0.92346 0.84336 1.87885 1.80308 1.36616 1.25800 1.22141 0.97392 0.84594 0.95761 1.21479 1.02948 0.95747 0.97835 1.20319 0.79301 0.86995 0.83811 1.90698 1.53418 1.62377 1.36434 1.46313 1.60754 1.22907 1.07500 1.21523 0.96453 0.81545 0.99774 1.19799 0.97069 0.98221 0.90937 1.20921 1.38841 1.01939 0.94521 0.90631 1.25001 0.94468 0.94746 0.99048 1.69904 1.41858 1.17454 1.24417 0.86748 0.78564 0.80832 0.82907 1.20225 1.21250 1.19074 1.20869 0.93853 0.97220 0.95627 1.21224 1.00110 0.92247 1.09438 0.92500 0.88170 0.92580 0.85009 0.85036 0.92390 0.92296 0.92332 0.92284 0.88223 0.88252 0.76894 0.91927 0.91896 0.95958 0.96404 0.92538 0.85517 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.64 10.50 -19.43 -0.20 -2.85 16 3 C 0.13 1.15 6.69 -39.21 -0.26 0.89 16 4 C -0.15 -1.33 9.99 -39.43 -0.39 -1.72 16 5 C -0.06 -0.49 9.69 -39.61 -0.38 -0.88 16 6 C -0.13 -1.14 5.51 -104.60 -0.58 -1.71 16 7 C 0.11 0.98 6.06 36.01 0.22 1.20 16 8 O -0.39 -4.34 10.33 -35.23 -0.36 -4.70 16 9 C 0.08 0.90 5.23 37.16 0.19 1.09 16 10 C -0.14 -1.60 6.07 -27.88 -0.17 -1.76 16 11 C 0.51 7.99 7.83 -10.99 -0.09 7.90 16 12 O -0.55 -10.73 15.98 5.55 0.09 -10.65 16 13 N -0.72 -11.63 5.56 -60.30 -0.33 -11.96 16 14 C 0.13 2.61 5.61 -4.05 -0.02 2.59 16 15 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 16 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 17 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 20 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 24 C -0.06 -0.48 9.69 -39.61 -0.38 -0.87 16 25 C -0.21 -1.68 9.04 -39.43 -0.36 -2.03 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 5.25 8.47 -40.82 -0.35 4.90 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 41 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -33.98 373.46 -7.75 -41.72 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.89 Total: 0.92 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.78 Total: -7.92 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.44 Total: -38.46 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.48 Total: -18.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.98 -7.75 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.803 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds