Wall clock time and date at job start Fri Apr 10 2020 21:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00086 * 2 1 4 4 C 1.38740 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94681 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05338 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94136 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46878 * 90.00026 * 7 6 5 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6 10 10 C 1.53009 * 109.47113 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47158 * 180.02562 * 10 9 8 12 12 O 1.21287 * 120.00127 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99963 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47170 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47626 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99380 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00571 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00175 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99593 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47244 * 90.00005 * 20 18 16 22 22 H 1.48498 * 109.46892 * 210.00151 * 20 18 16 23 23 H 1.48499 * 109.47059 * 330.00072 * 20 18 16 24 24 C 1.38261 * 120.11222 * 0.25270 * 6 5 4 25 25 C 1.38144 * 120.05633 * 359.45047 * 24 6 5 26 26 H 1.09000 * 109.47348 * 59.99680 * 1 2 3 27 27 H 1.08993 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47106 * 300.00137 * 1 2 3 29 29 H 1.07998 * 120.02343 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.97195 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47060 * 210.00157 * 7 6 5 32 32 H 1.09001 * 109.47380 * 330.00244 * 7 6 5 33 33 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 34 34 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 35 35 H 1.08997 * 109.46502 * 300.00085 * 10 9 8 36 36 H 1.08998 * 109.46733 * 60.00191 * 10 9 8 37 37 H 0.96995 * 119.99730 * 0.02562 * 13 11 10 38 38 H 1.09007 * 109.47857 * 300.00177 * 14 13 11 39 39 H 1.09004 * 109.47269 * 59.99983 * 14 13 11 40 40 H 1.08996 * 109.47412 * 300.00560 * 15 14 13 41 41 H 1.09004 * 109.47367 * 60.00215 * 15 14 13 42 42 H 0.97000 * 119.99699 * 180.02562 * 19 18 16 43 43 H 1.07999 * 119.97190 * 179.70663 * 24 6 5 44 44 H 1.08001 * 120.03140 * 180.25189 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 8 4.2018 5.4443 -1.3442 9 6 4.8480 6.7139 -1.4559 10 6 5.0260 7.0674 -2.9339 11 6 5.7080 8.4060 -3.0517 12 8 6.0206 9.0175 -2.0520 13 7 5.9707 8.9238 -4.2681 14 6 6.6332 10.2253 -4.3826 15 6 6.8124 10.5781 -5.8605 16 6 7.4945 11.9167 -5.9784 17 1 7.7728 12.4612 -5.0881 18 6 7.7633 12.4463 -7.2227 19 7 8.3590 13.6143 -7.3255 20 14 7.2813 11.5048 -8.7624 21 1 5.9065 11.8915 -9.1691 22 1 8.2308 11.8278 -9.8576 23 1 7.3236 10.0467 -8.4846 24 6 1.9212 3.6047 0.0080 25 6 1.2916 2.3751 0.0012 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.0208 0.3799 -0.0014 30 1 5.1346 2.5749 -0.0008 31 1 3.3584 5.7457 0.5177 32 1 4.9444 4.9376 0.5160 33 1 4.2377 7.4762 -0.9714 34 1 5.8241 6.6687 -0.9727 35 1 5.6360 6.3052 -3.4187 36 1 4.0498 7.1128 -3.4166 37 1 5.7204 8.4349 -5.0675 38 1 6.0230 10.9876 -3.8981 39 1 7.6092 10.1800 -3.8993 40 1 7.4228 9.8158 -6.3446 41 1 5.8366 10.6233 -6.3442 42 1 8.5478 13.9870 -8.2009 43 1 1.3343 4.5114 0.0140 44 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612061081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:56:58 Heat of formation + Delta-G solvation = -131.883174 kcal Electronic energy + Delta-G solvation = -23156.924104 eV Core-core repulsion = 19459.367068 eV Total energy + Delta-G solvation = -3697.557036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12542 -40.77673 -39.25970 -38.00292 -36.65242 -34.79539 -33.34981 -32.22810 -31.99828 -31.22437 -28.50216 -27.13008 -26.19205 -24.35647 -23.63097 -22.59388 -22.19932 -21.29322 -19.13467 -19.01204 -18.37702 -17.57516 -17.09334 -16.98865 -16.88003 -16.62673 -16.41959 -16.24299 -16.18561 -15.42658 -15.20548 -14.78433 -14.65716 -14.46397 -14.40538 -14.24454 -13.68313 -13.56472 -13.34529 -13.02662 -12.82299 -12.52166 -12.32694 -12.22744 -12.16904 -12.14807 -11.85857 -11.75983 -11.73839 -11.51744 -10.91751 -10.78638 -10.61067 -10.04764 -9.97989 -9.17494 -8.29924 -6.37333 0.30655 0.37672 1.39768 1.42327 1.53551 1.63448 2.06457 2.36206 2.37177 2.64034 3.05332 3.14559 3.77266 3.79995 3.88530 3.95929 4.07856 4.18473 4.27048 4.35090 4.38762 4.39259 4.39815 4.43099 4.52540 4.59090 4.61464 4.73849 4.74633 4.75651 4.84057 4.87499 5.06895 5.16551 5.25258 5.34948 5.40940 5.43667 5.62994 5.64815 5.77139 6.16883 6.22192 6.41782 6.60172 6.71253 7.26797 7.28276 8.86846 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.001685 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.316478 B =16616.224077 C =17138.546848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.119 3.881 4 C -0.168 4.168 5 C -0.064 4.064 6 C -0.140 4.140 7 C 0.105 3.895 8 O -0.394 6.394 9 C 0.081 3.919 10 C -0.126 4.126 11 C 0.510 3.490 12 O -0.593 6.593 13 N -0.715 5.715 14 C 0.143 3.857 15 C -0.014 4.014 16 C -0.541 4.541 17 H 0.028 0.972 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.959 3.041 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.236 1.236 24 C -0.065 4.065 25 C -0.214 4.214 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.065 0.935 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.416 0.584 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.268 0.732 43 H 0.140 0.860 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.719 -30.513 13.931 37.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.073 3.927 4 C -0.187 4.187 5 C -0.082 4.082 6 C -0.141 4.141 7 C 0.029 3.971 8 O -0.314 6.314 9 C 0.004 3.996 10 C -0.166 4.166 11 C 0.298 3.702 12 O -0.475 6.475 13 N -0.367 5.367 14 C 0.019 3.981 15 C -0.052 4.052 16 C -0.579 4.579 17 H 0.046 0.954 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.781 3.219 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.159 1.159 24 C -0.083 4.083 25 C -0.233 4.233 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.253 0.747 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.157 0.843 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.412 -30.256 14.360 37.747 hybrid contribution 0.015 0.613 -0.688 0.922 sum -17.398 -29.642 13.672 36.990 Atomic orbital electron populations 1.23343 0.76447 1.05584 1.02283 1.86049 1.23495 1.26922 1.88537 1.19314 0.92791 0.84722 0.95853 1.20641 0.91773 0.99142 1.07106 1.21090 1.00770 0.90737 0.95593 1.19655 0.94039 0.94306 1.06061 1.21343 0.99608 0.92629 0.83530 1.87857 1.80229 1.36160 1.27149 1.22036 0.96996 0.84783 0.95797 1.21412 1.03881 0.93093 0.98212 1.21059 0.78358 0.88039 0.82710 1.90688 1.55077 1.63861 1.37840 1.46059 1.60398 1.21439 1.08803 1.21028 0.95659 0.83380 0.97990 1.19661 0.97382 0.95503 0.92605 1.21277 1.39307 1.04146 0.93189 0.95366 1.26086 0.94212 0.95727 1.03269 1.70079 1.43647 1.19759 1.25584 0.85535 0.78395 0.80652 0.77270 1.19002 1.21314 1.15894 1.21100 0.93870 0.97970 0.95381 1.21455 1.01178 0.91798 1.08860 0.91815 0.86385 0.91604 0.84236 0.83903 0.91531 0.91512 0.93017 0.93020 0.85941 0.85908 0.74721 0.93794 0.93818 0.94418 0.94539 0.92347 0.84266 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.21 10.50 -92.42 -0.97 -6.18 16 3 C 0.12 1.97 6.69 22.51 0.15 2.12 16 4 C -0.17 -2.76 9.99 22.37 0.22 -2.53 16 5 C -0.06 -1.02 9.69 22.25 0.22 -0.81 16 6 C -0.14 -2.37 5.51 -19.85 -0.11 -2.48 16 7 C 0.10 1.75 6.06 71.24 0.43 2.18 16 8 O -0.39 -8.06 10.33 -148.98 -1.54 -9.60 16 9 C 0.08 1.72 5.23 71.99 0.38 2.10 16 10 C -0.13 -2.51 6.07 29.85 0.18 -2.33 16 11 C 0.51 15.14 7.83 87.66 0.69 15.82 16 12 O -0.59 -23.04 15.98 -3.05 -0.05 -23.09 16 13 N -0.72 -21.44 5.56 -463.06 -2.57 -24.01 16 14 C 0.14 5.76 5.61 86.38 0.48 6.25 16 15 C -0.01 -0.60 4.16 29.85 0.12 -0.48 16 16 C -0.54 -30.80 9.66 25.60 0.25 -30.56 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.24 5.47 84.65 0.46 0.70 16 19 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 20 Si 0.96 42.06 27.47 68.60 1.88 43.94 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 24 C -0.07 -1.00 9.69 22.25 0.22 -0.78 16 25 C -0.21 -3.08 9.04 22.37 0.20 -2.88 16 26 H 0.06 0.37 7.66 -2.39 -0.02 0.35 16 27 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.07 0.34 7.66 -2.39 -0.02 0.33 16 29 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 31 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.05 1.16 8.10 -2.38 -0.02 1.15 16 34 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 35 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.42 9.45 8.47 -92.71 -0.79 8.67 16 38 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 41 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 43 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.15 1.40 6.30 -2.91 -0.02 1.39 16 Total: -1.00 -75.47 373.46 2.21 -73.26 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.15 Total: 17.03 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 5.01 Total: -12.43 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.27 Total: -82.93 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.56 Total: -38.87 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.94 kcal Total: -75.47 2.21 -73.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.625 kcal (2) G-P(sol) polarization free energy of solvation -75.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds