Wall clock time and date at job start Fri Apr 10 2020 21:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47236 * 2 1 4 4 C 1.34221 * 117.00039 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00333 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99871 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.47131 * 174.19531 * 6 4 3 8 8 C 1.46904 * 110.99880 * 286.71112 * 7 6 4 9 9 C 1.50699 * 109.47443 * 300.02732 * 8 7 6 10 10 H 1.07997 * 119.99745 * 356.94394 * 9 8 7 11 11 C 1.37870 * 120.00047 * 176.94261 * 9 8 7 12 12 N 1.31506 * 120.00420 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99684 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47207 * 60.00391 * 13 11 9 15 15 H 1.48503 * 109.46999 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47432 * 299.99896 * 13 11 9 17 17 C 1.46897 * 111.00083 * 162.76316 * 7 6 4 18 18 C 1.50705 * 109.46902 * 200.04262 * 17 7 6 19 19 C 1.38166 * 120.02640 * 261.81220 * 18 17 7 20 20 C 1.50696 * 119.97390 * 359.97438 * 19 18 17 21 21 C 1.38250 * 120.05217 * 179.72402 * 19 18 17 22 22 C 1.38284 * 120.11579 * 0.51358 * 21 19 18 23 23 C 1.38123 * 120.05238 * 359.48821 * 22 21 19 24 24 C 1.38716 * 120.03003 * 81.79298 * 18 17 7 25 25 O 1.35896 * 120.05045 * 0.04137 * 24 18 17 26 26 H 1.09001 * 109.46875 * 300.00102 * 1 2 3 27 27 H 1.08992 * 109.47194 * 60.00362 * 1 2 3 28 28 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47104 * 239.99657 * 2 1 3 30 30 H 1.09004 * 109.46799 * 119.99715 * 2 1 3 31 31 H 1.08995 * 109.47871 * 54.19415 * 6 4 3 32 32 H 1.08997 * 109.47132 * 294.18678 * 6 4 3 33 33 H 1.09007 * 109.46866 * 60.02341 * 8 7 6 34 34 H 1.09002 * 109.47388 * 180.02562 * 8 7 6 35 35 H 0.97003 * 120.00609 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.47573 * 80.04296 * 17 7 6 37 37 H 1.09000 * 109.47230 * 320.04033 * 17 7 6 38 38 H 1.09001 * 109.47262 * 83.94749 * 20 19 18 39 39 H 1.08999 * 109.47186 * 203.93919 * 20 19 18 40 40 H 1.09003 * 109.47212 * 323.94411 * 20 19 18 41 41 H 1.08002 * 119.94416 * 180.25320 * 21 19 18 42 42 H 1.07995 * 119.97548 * 179.76457 * 22 21 19 43 43 H 1.08002 * 120.03176 * 180.23756 * 23 22 21 44 44 H 0.96700 * 114.00447 * 269.97456 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3812 2.8631 0.1393 8 6 5.7612 2.4929 1.5093 9 6 5.2352 3.5253 2.4729 10 1 4.7175 4.3970 2.1008 11 6 5.4148 3.3569 3.8294 12 7 6.0456 2.2957 4.2825 13 14 4.7634 4.6370 5.0238 14 1 3.2912 4.7549 4.8688 15 1 5.0827 4.2246 6.4142 16 1 5.3978 5.9489 4.7381 17 6 6.0129 4.1282 -0.2585 18 6 7.4656 3.8855 -0.5781 19 6 8.4358 4.1528 0.3686 20 6 8.0410 4.6877 1.7210 21 6 9.7681 3.9250 0.0780 22 6 10.1341 3.4393 -1.1639 23 6 9.1680 3.1706 -2.1138 24 6 7.8297 3.3933 -1.8228 25 8 6.8773 3.1301 -2.7557 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.5045 3.5025 0.8339 32 1 3.6700 3.4346 -0.9370 33 1 5.3371 1.5188 1.7533 34 1 6.8475 2.4456 1.5848 35 1 6.1717 2.1770 5.2370 36 1 5.9356 4.8457 0.5585 37 1 5.5085 4.5250 -1.1395 38 1 7.7595 3.8595 2.3713 39 1 8.8826 5.2239 2.1595 40 1 7.1954 5.3666 1.6105 41 1 10.5247 4.1306 0.8208 42 1 11.1758 3.2658 -1.3898 43 1 9.4539 2.7877 -3.0823 44 1 6.5306 2.2281 -2.7203 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237489670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:57:28 Heat of formation + Delta-G solvation = -99.812598 kcal Electronic energy + Delta-G solvation = -26409.352840 eV Core-core repulsion = 22713.186488 eV Total energy + Delta-G solvation = -3696.166352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96344 -39.53808 -36.93722 -36.33060 -35.60275 -32.61099 -32.19627 -31.53310 -30.07027 -27.93582 -27.08239 -25.84872 -24.40295 -23.09604 -21.94493 -21.16961 -20.34055 -19.50253 -17.48791 -17.24269 -16.64084 -16.23624 -15.77223 -15.56341 -15.29417 -14.89703 -14.65456 -14.33949 -14.03737 -13.47516 -13.24322 -13.01715 -12.70670 -12.56422 -12.39285 -12.35703 -12.19535 -11.74541 -11.52193 -11.39216 -11.37070 -11.02633 -10.96107 -10.92137 -10.79782 -10.54422 -10.27458 -10.21116 -10.09406 -9.86800 -9.73384 -9.58027 -8.48066 -8.13666 -8.04422 -7.30816 -6.08500 -4.18311 1.71357 1.79231 2.91320 3.11337 3.22873 3.29293 3.31080 4.03940 4.33766 4.74443 5.02884 5.06543 5.12285 5.21265 5.27818 5.30793 5.33173 5.43423 5.52502 5.65960 5.76092 5.85119 5.88438 5.89081 6.03695 6.06385 6.11056 6.21415 6.28727 6.42876 6.49665 6.68564 6.79629 6.91060 6.93377 7.03664 7.16537 7.21402 7.37363 7.51215 7.87841 7.89299 8.11225 8.13030 8.19722 8.48999 8.90889 9.47372 10.95860 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.009597 B = 0.006354 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.966620 B = 4405.350177 C = 6731.345943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.368 6.368 4 C 0.467 3.533 5 O -0.490 6.490 6 C 0.067 3.933 7 N -0.522 5.522 8 C 0.182 3.818 9 C -0.553 4.553 10 H 0.057 0.943 11 C 0.072 3.928 12 N -0.883 5.883 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.096 3.904 18 C -0.088 4.088 19 C -0.042 4.042 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.166 4.166 24 C 0.125 3.875 25 O -0.500 6.500 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 0.730 -9.621 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.286 6.286 4 C 0.309 3.691 5 O -0.375 6.375 6 C -0.062 4.062 7 N -0.247 5.247 8 C 0.056 3.944 9 C -0.592 4.592 10 H 0.075 0.925 11 C -0.132 4.132 12 N -0.521 5.521 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.031 4.031 18 C -0.089 4.089 19 C -0.043 4.043 20 C -0.178 4.178 21 C -0.158 4.158 22 C -0.127 4.127 23 C -0.185 4.185 24 C 0.080 3.920 25 O -0.311 6.311 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.286 0.511 -9.928 10.024 hybrid contribution -0.642 0.477 1.510 1.708 sum -1.928 0.988 -8.419 8.693 Atomic orbital electron populations 1.21780 0.93225 1.02451 1.03284 1.22865 0.94807 0.81196 1.02269 1.86482 1.25684 1.31516 1.84950 1.23841 0.79704 0.93301 0.72259 1.90620 1.60027 1.42959 1.43891 1.21479 0.91529 0.89741 1.03464 1.62164 1.03700 1.29213 1.29597 1.19992 0.97500 0.96474 0.80393 1.21617 1.38062 1.07601 0.91962 0.92541 1.24878 0.94918 0.95200 0.98186 1.69939 1.40930 1.26977 1.14228 0.86834 0.79587 0.82179 0.80548 1.20283 1.21252 1.20062 1.20893 0.90132 0.92160 0.99959 1.19946 0.95944 1.00825 0.92225 1.19890 0.92302 0.96264 0.95857 1.21137 1.00572 1.02925 0.93212 1.20994 0.95683 1.02248 0.96894 1.20850 0.98610 0.99684 0.93556 1.21223 0.92633 1.04551 1.00067 1.18220 0.87396 0.98436 0.87917 1.84650 1.56056 1.36244 1.54125 0.91552 0.91765 0.90717 0.91765 0.91456 0.89184 0.88786 0.94293 0.94185 0.92670 0.91434 0.91541 0.87318 0.93418 0.90962 0.86420 0.86492 0.86362 0.75261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.31 10.22 -39.23 -0.40 -6.71 16 4 C 0.47 9.11 7.60 36.01 0.27 9.38 16 5 O -0.49 -10.94 14.96 -18.75 -0.28 -11.22 16 6 C 0.07 1.24 5.41 -4.97 -0.03 1.21 16 7 N -0.52 -10.63 4.20 -238.96 -1.00 -11.63 16 8 C 0.18 4.43 4.30 -4.97 -0.02 4.41 16 9 C -0.55 -13.72 5.31 -34.44 -0.18 -13.90 16 10 H 0.06 1.36 6.09 -52.49 -0.32 1.04 16 11 C 0.07 1.87 5.27 -17.83 -0.09 1.78 16 12 N -0.88 -24.60 13.29 55.43 0.74 -23.86 16 13 Si 0.88 20.17 29.54 -169.99 -5.02 15.15 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 17 C 0.10 1.78 4.42 -4.98 -0.02 1.75 16 18 C -0.09 -1.63 4.98 -104.47 -0.52 -2.15 16 19 C -0.04 -0.77 5.27 -104.65 -0.55 -1.32 16 20 C -0.12 -2.31 8.01 36.00 0.29 -2.02 16 21 C -0.14 -2.26 9.67 -39.56 -0.38 -2.64 16 22 C -0.11 -1.60 10.04 -39.61 -0.40 -2.00 16 23 C -0.17 -2.56 9.99 -39.43 -0.39 -2.95 16 24 C 0.13 2.14 6.68 -39.21 -0.26 1.88 16 25 O -0.50 -7.89 12.70 -19.41 -0.25 -8.14 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.09 1.76 6.21 -51.93 -0.32 1.43 16 32 H 0.09 1.44 7.65 -51.93 -0.40 1.04 16 33 H 0.04 1.10 6.73 -51.92 -0.35 0.75 16 34 H 0.04 1.05 5.24 -51.93 -0.27 0.78 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.07 1.33 4.00 -51.93 -0.21 1.12 16 37 H 0.07 1.13 7.28 -51.93 -0.38 0.75 16 38 H 0.11 2.45 5.36 -51.93 -0.28 2.17 16 39 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 40 H 0.07 1.38 6.02 -51.93 -0.31 1.06 16 41 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.39 5.25 9.06 45.56 0.41 5.66 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -29.82 354.51 -7.91 -37.73 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.36 Total: 9.99 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.68 Total: -6.65 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.27 Total: -35.49 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.93 Total: -26.07 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.82 -7.91 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237489670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.082 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds