Wall clock time and date at job start Fri Apr 10 2020 22:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76205 * 102.99949 * 2 1 4 4 C 1.38997 * 120.07911 * 0.02639 * 3 2 1 5 5 C 1.38060 * 119.92073 * 179.97438 * 4 3 2 6 6 C 1.38320 * 120.07827 * 359.97438 * 5 4 3 7 7 C 1.38283 * 120.16407 * 359.75380 * 6 5 4 8 8 C 1.38109 * 120.07693 * 0.50347 * 7 6 5 9 9 C 1.50702 * 120.04155 * 179.77076 * 8 7 6 10 10 C 1.52995 * 109.46953 * 98.51384 * 9 8 7 11 11 H 1.08999 * 109.47584 * 54.07595 * 10 9 8 12 12 C 1.53007 * 109.47155 * 174.07593 * 10 9 8 13 13 N 1.46900 * 109.47412 * 294.07063 * 10 9 8 14 14 C 1.46901 * 111.00321 * 157.41666 * 13 10 9 15 15 C 1.52994 * 109.47108 * 180.02562 * 14 13 10 16 16 C 1.52999 * 109.47451 * 300.00232 * 15 14 13 17 17 C 1.53006 * 109.47323 * 60.00155 * 15 14 13 18 18 C 1.50699 * 109.47130 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00037 * 1.62948 * 18 15 14 20 20 C 1.37878 * 120.00426 * 181.62578 * 18 15 14 21 21 N 1.31513 * 120.00195 * 193.52405 * 20 18 15 22 22 Si 1.86808 * 119.99792 * 13.52062 * 20 18 15 23 23 H 1.48498 * 109.46731 * 85.64202 * 22 20 18 24 24 H 1.48500 * 109.47206 * 205.64425 * 22 20 18 25 25 H 1.48502 * 109.47007 * 325.64401 * 22 20 18 26 26 H 1.08997 * 109.47349 * 299.99461 * 1 2 3 27 27 H 1.09003 * 109.47326 * 60.00166 * 1 2 3 28 28 H 1.09001 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.03725 * 359.94928 * 4 3 2 30 30 H 1.07992 * 119.95757 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.91928 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.96788 * 180.25051 * 7 6 5 33 33 H 1.09001 * 109.46827 * 338.51332 * 9 8 7 34 34 H 1.08993 * 109.46987 * 218.51234 * 9 8 7 35 35 H 1.08991 * 109.46998 * 180.02562 * 12 10 9 36 36 H 1.08997 * 109.46551 * 300.00025 * 12 10 9 37 37 H 1.08999 * 109.46872 * 59.99567 * 12 10 9 38 38 H 1.00905 * 110.99862 * 33.46800 * 13 10 9 39 39 H 1.08997 * 109.46978 * 60.00575 * 14 13 10 40 40 H 1.09000 * 109.46819 * 300.00379 * 14 13 10 41 41 H 1.09003 * 109.47057 * 69.09145 * 16 15 14 42 42 H 1.08996 * 109.47205 * 189.09090 * 16 15 14 43 43 H 1.09002 * 109.46989 * 309.09015 * 16 15 14 44 44 H 1.09006 * 109.46548 * 59.99863 * 17 15 14 45 45 H 1.08996 * 109.47611 * 179.97438 * 17 15 14 46 46 H 1.09001 * 109.46803 * 300.00028 * 17 15 14 47 47 H 0.97004 * 119.99841 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1950 2.6662 0.0006 5 6 1.5093 4.0106 0.0011 6 6 2.8326 4.4132 0.0016 7 6 3.8454 3.4716 0.0067 8 6 3.5385 2.1250 0.0008 9 6 4.6429 1.0996 0.0012 10 6 4.8661 0.5910 1.4268 11 1 3.9220 0.2319 1.8365 12 6 5.8816 -0.5533 1.4070 13 7 5.3779 1.6853 2.2626 14 6 5.1079 1.4326 3.6843 15 6 5.6537 2.5914 4.5209 16 6 7.1631 2.7119 4.3021 17 6 4.9712 3.8931 4.0958 18 6 5.3762 2.3324 5.9793 19 1 4.8854 1.4191 6.2818 20 6 5.7488 3.2613 6.9277 21 7 5.7551 2.9343 8.2015 22 14 6.2449 4.9842 6.4031 23 1 5.0318 5.8313 6.2758 24 1 7.1529 5.5697 7.4218 25 1 6.9441 4.9211 5.0945 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.1616 2.3526 0.0002 30 1 0.7210 4.7487 0.0011 31 1 3.0756 5.4655 0.0024 32 1 4.8775 3.7894 0.0112 33 1 5.5611 1.5544 -0.3703 34 1 4.3643 0.2654 -0.6426 35 1 6.0402 -0.9158 2.4225 36 1 5.5018 -1.3652 0.7868 37 1 6.8256 -0.1941 0.9973 38 1 4.9924 2.5719 1.9735 39 1 5.5938 0.5050 3.9871 40 1 4.0325 1.3472 3.8403 41 1 7.3566 3.0574 3.2865 42 1 7.5777 3.4257 5.0138 43 1 7.6306 1.7383 4.4499 44 1 3.8958 3.8073 4.2518 45 1 5.3597 4.7187 4.6922 46 1 5.1716 4.0807 3.0409 47 1 6.0177 3.5878 8.8686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459727481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:29 Heat of formation + Delta-G solvation = 27.801768 kcal Electronic energy + Delta-G solvation = -24082.126875 eV Core-core repulsion = 20970.080263 eV Total energy + Delta-G solvation = -3112.046612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.57008 -37.49213 -35.42730 -32.32286 -31.48007 -31.32479 -29.44971 -29.01302 -26.54769 -26.13391 -25.06847 -24.05985 -22.96675 -21.69112 -20.05890 -18.68060 -17.64606 -16.23309 -16.08933 -15.81119 -15.41923 -14.89442 -14.77090 -14.39399 -14.20251 -14.00854 -13.69503 -13.33293 -13.00581 -12.76961 -12.70559 -12.45068 -12.42031 -12.11219 -11.98859 -11.88708 -11.70161 -11.48530 -11.39690 -11.20443 -10.92259 -10.47557 -10.26186 -10.17151 -9.98458 -9.90629 -9.81728 -9.72825 -8.92229 -8.84752 -8.48285 -8.32117 -7.77205 -7.46304 -6.02884 -3.97982 1.12216 1.25002 1.39148 2.27056 3.34729 3.43830 3.47791 3.58929 4.48370 4.64711 4.66162 4.75786 4.79917 4.82194 4.94403 5.19716 5.24850 5.30028 5.30950 5.41332 5.47920 5.55468 5.71110 5.83048 5.91705 5.99847 6.06367 6.08609 6.15968 6.21355 6.30885 6.33182 6.37851 6.47250 6.54210 6.63507 6.67232 6.81844 6.85444 6.87059 7.00100 7.13887 7.47264 7.62158 7.71801 7.93709 8.05544 8.61672 9.02331 9.63555 11.10709 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.004359 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.535168 B = 6422.304656 C = 6894.465083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.105 6.105 3 C -0.085 4.085 4 C -0.133 4.133 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.099 4.099 8 C -0.062 4.062 9 C -0.085 4.085 10 C 0.086 3.914 11 H 0.048 0.952 12 C -0.136 4.136 13 N -0.686 5.686 14 C 0.086 3.914 15 C 0.040 3.960 16 C -0.125 4.125 17 C -0.146 4.146 18 C -0.509 4.509 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.898 5.898 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.307 1.307 25 H -0.245 1.245 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.335 0.665 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.031 0.969 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -2.206 -20.837 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.138 5.862 3 C -0.197 4.197 4 C -0.156 4.156 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.119 4.119 8 C -0.067 4.067 9 C -0.123 4.123 10 C -0.024 4.024 11 H 0.066 0.934 12 C -0.194 4.194 13 N -0.320 5.320 14 C -0.042 4.042 15 C 0.039 3.961 16 C -0.183 4.183 17 C -0.203 4.203 18 C -0.547 4.547 19 H 0.089 0.911 20 C -0.129 4.129 21 N -0.536 5.536 22 Si 0.716 3.284 23 H -0.217 1.217 24 H -0.236 1.236 25 H -0.170 1.170 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.066 -3.507 -20.624 22.082 hybrid contribution -1.798 2.405 0.074 3.004 sum -8.865 -1.102 -20.550 22.408 Atomic orbital electron populations 1.23720 0.95988 1.06932 1.05464 1.85547 1.05228 1.03174 1.92269 1.21614 0.96084 0.96501 1.05521 1.21105 0.97944 0.93313 1.03268 1.21004 0.96708 0.95171 0.99788 1.21195 0.92742 0.99737 1.00241 1.21116 0.99850 0.91822 0.99104 1.19614 0.92368 0.94870 0.99887 1.20866 0.96313 0.97013 0.98100 1.21449 0.96735 0.92918 0.91336 0.93414 1.21755 0.99159 0.96602 1.01912 1.60752 1.63096 1.04205 1.03975 1.21950 0.97168 0.99771 0.85312 1.18475 0.92307 0.90313 0.94978 1.22054 0.97762 1.00086 0.98365 1.22348 1.00351 0.99692 0.97940 1.20881 1.39453 1.06063 0.88307 0.91137 1.24972 0.94523 0.98672 0.94689 1.69966 1.48316 1.34610 1.00713 0.87327 0.78099 0.85188 0.77752 1.21745 1.23629 1.17046 0.89776 0.90035 0.87532 0.86122 0.85944 0.85743 0.85128 0.89920 0.90179 0.92330 0.93212 0.92251 0.84424 0.91750 0.96387 0.94976 0.93914 0.94104 0.93767 0.94283 0.94938 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.15 101.05 0.92 -0.29 16 2 S -0.10 -1.18 20.10 -107.50 -2.16 -3.34 16 3 C -0.08 -1.06 6.11 -39.04 -0.24 -1.30 16 4 C -0.13 -1.52 9.36 -39.37 -0.37 -1.89 16 5 C -0.11 -1.17 10.04 -39.62 -0.40 -1.57 16 6 C -0.12 -1.35 10.04 -39.53 -0.40 -1.74 16 7 C -0.10 -1.22 8.27 -39.61 -0.33 -1.55 16 8 C -0.06 -0.80 4.64 -104.40 -0.48 -1.28 16 9 C -0.09 -1.06 4.38 -27.88 -0.12 -1.18 16 10 C 0.09 1.26 2.56 -67.71 -0.17 1.08 16 11 H 0.05 0.77 7.00 -51.93 -0.36 0.40 16 12 C -0.14 -1.85 9.39 37.16 0.35 -1.50 16 13 N -0.69 -11.78 5.69 -106.73 -0.61 -12.39 16 14 C 0.09 1.78 4.37 -3.83 -0.02 1.77 16 15 C 0.04 0.94 0.57 -155.66 -0.09 0.86 16 16 C -0.13 -2.83 7.55 37.16 0.28 -2.55 16 17 C -0.15 -3.23 7.35 37.16 0.27 -2.95 16 18 C -0.51 -14.33 8.62 -34.44 -0.30 -14.62 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 2.12 5.33 -17.82 -0.09 2.02 16 21 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 22 Si 0.88 22.29 22.80 -169.99 -3.88 18.42 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 25 H -0.24 -5.74 4.61 56.52 0.26 -5.48 16 26 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 27 H 0.08 0.55 7.75 -51.92 -0.40 0.15 16 28 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.12 1.13 5.88 -52.49 -0.31 0.83 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.13 1.47 8.03 -52.49 -0.42 1.05 16 33 H 0.08 0.98 8.02 -51.93 -0.42 0.57 16 34 H 0.08 0.94 7.19 -51.93 -0.37 0.56 16 35 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.34 5.66 4.38 -39.29 -0.17 5.49 16 39 H 0.06 1.37 7.28 -51.93 -0.38 0.99 16 40 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 41 H 0.03 0.65 7.88 -51.93 -0.41 0.24 16 42 H 0.04 1.01 4.31 -51.93 -0.22 0.79 16 43 H 0.04 0.91 8.12 -51.93 -0.42 0.48 16 44 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.90 2.23 -51.93 -0.12 0.79 16 46 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -30.95 361.86 -9.38 -40.32 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.78 Total: 5.28 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -1.18 Total: -26.69 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.17 Total: -39.45 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -3.88 Total: 18.42 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.16 Total: -3.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.95 -9.38 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.124 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds