Wall clock time and date at job start Fri Apr 10 2020 21:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45918 * 2 1 4 4 C 1.53035 * 109.45833 * 240.02819 * 2 1 3 5 5 C 1.53196 * 109.31213 * 178.61396 * 4 2 1 6 6 N 1.46932 * 108.77183 * 54.63300 * 5 4 2 7 7 C 1.34785 * 120.62586 * 126.37159 * 6 5 4 8 8 O 1.21281 * 119.99529 * 185.45035 * 7 6 5 9 9 C 1.50698 * 119.99997 * 5.45147 * 7 6 5 10 10 C 1.50702 * 109.46766 * 180.02562 * 9 7 6 11 11 N 1.33240 * 125.52726 * 90.00345 * 10 9 7 12 12 C 1.30831 * 109.82954 * 180.02562 * 11 10 9 13 13 N 1.34427 * 108.07723 * 359.97438 * 12 11 10 14 14 H 0.96999 * 126.81885 * 180.02562 * 13 12 11 15 15 N 1.30712 * 125.52724 * 269.69453 * 10 9 7 16 16 C 1.46926 * 118.74150 * 306.39287 * 6 5 4 17 17 H 1.09003 * 109.58202 * 293.67803 * 16 6 5 18 18 C 1.53001 * 109.58477 * 173.39789 * 16 6 5 19 19 N 1.46499 * 109.46722 * 179.97438 * 18 16 6 20 20 C 1.36935 * 119.99940 * 174.98434 * 19 18 16 21 21 H 1.08008 * 120.00168 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00332 * 179.72540 * 20 19 18 23 23 N 1.31615 * 120.00073 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99505 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47472 * 90.00225 * 24 22 20 26 26 H 1.48510 * 109.46600 * 210.00008 * 24 22 20 27 27 H 1.48502 * 109.47066 * 329.99565 * 24 22 20 28 28 C 1.53075 * 109.45000 * 119.81427 * 2 1 3 29 29 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47039 * 299.97321 * 1 2 3 31 31 H 1.09003 * 109.47368 * 59.97189 * 1 2 3 32 32 H 1.08997 * 109.50098 * 58.66289 * 4 2 1 33 33 H 1.09003 * 109.52325 * 298.58195 * 4 2 1 34 34 H 1.08992 * 109.58829 * 294.84990 * 5 4 2 35 35 H 1.09000 * 109.58718 * 174.41953 * 5 4 2 36 36 H 1.08995 * 109.47096 * 300.00070 * 9 7 6 37 37 H 1.08994 * 109.47174 * 60.00324 * 9 7 6 38 38 H 1.08001 * 125.96195 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47208 * 59.95676 * 18 16 6 40 40 H 1.09001 * 109.47065 * 299.95466 * 18 16 6 41 41 H 0.96995 * 120.00377 * 354.97598 * 19 18 16 42 42 H 0.97003 * 119.99777 * 179.97438 * 23 22 20 43 43 H 1.08996 * 109.38861 * 61.37125 * 28 2 1 44 44 H 1.09000 * 109.62849 * 301.25944 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0678 -1.2488 0.0002 7 6 4.9614 -2.2578 0.0003 8 8 5.2889 -2.7777 1.0460 9 6 5.5536 -2.7400 -1.2989 10 6 6.5159 -3.8669 -1.0247 11 7 6.2019 -5.1612 -0.9868 12 6 7.2699 -5.8694 -0.7235 13 7 8.3069 -5.0251 -0.5858 14 1 9.2266 -5.2614 -0.3882 15 7 7.7950 -3.7335 -0.7910 16 6 3.5713 -0.6884 1.2644 17 1 3.9164 0.3403 1.3685 18 6 4.0912 -1.5248 2.4354 19 7 3.5952 -0.9636 3.6944 20 6 3.8465 -1.6068 4.8768 21 1 4.4101 -2.5281 4.8812 22 6 3.3815 -1.0721 6.0705 23 7 3.6227 -1.6906 7.2069 24 14 2.4133 0.5255 6.0636 25 1 0.9658 0.2265 5.9215 26 1 2.6461 1.2507 7.3385 27 1 2.8587 1.3693 4.9257 28 6 2.0398 -0.7176 1.2523 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 1.6572 -0.2210 -2.1398 33 1 1.6977 -1.7558 -1.2387 34 1 3.9143 0.3407 -1.3674 35 1 3.9417 -1.2847 -2.0983 36 1 4.7564 -3.0943 -1.9522 37 1 6.0829 -1.9196 -1.7835 38 1 7.3113 -6.9448 -0.6325 39 1 5.1811 -1.5116 2.4357 40 1 3.7403 -2.5517 2.3324 41 1 3.0888 -0.1363 3.6905 42 1 3.2980 -1.3167 8.0410 43 1 1.6957 -1.7518 1.2420 44 1 1.6593 -0.2160 2.1422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691851431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:58:25 Heat of formation + Delta-G solvation = 79.611606 kcal Electronic energy + Delta-G solvation = -26063.931161 eV Core-core repulsion = 22440.130729 eV Total energy + Delta-G solvation = -3623.800432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.18967 -40.39003 -37.62997 -35.00792 -33.92603 -33.36826 -32.08136 -31.63102 -30.18012 -29.35398 -27.85346 -25.71813 -23.48137 -23.15188 -22.70372 -21.40283 -20.58700 -20.15439 -18.94653 -18.37562 -17.55353 -16.74971 -15.96774 -15.62064 -15.29224 -15.09088 -14.67568 -14.32850 -14.23893 -13.67325 -13.57398 -13.52736 -13.42363 -12.99062 -12.63528 -12.48550 -12.22395 -11.97927 -11.94362 -11.86207 -11.55693 -11.25033 -10.95794 -10.81780 -10.70592 -10.44665 -10.25171 -10.22119 -10.14367 -10.06526 -9.79944 -9.44172 -8.83927 -8.78535 -8.35058 -7.01772 -5.61651 -2.94957 1.52089 2.53177 2.68489 2.80124 3.18465 3.45081 3.46661 3.52462 3.95929 4.48626 4.55286 4.64654 4.71194 4.76034 4.80005 4.87403 5.11118 5.18335 5.22096 5.33724 5.37074 5.48269 5.56609 5.66511 5.67475 5.70803 5.82327 5.86916 5.92797 5.98899 6.07683 6.14341 6.19406 6.25366 6.27598 6.52929 6.66991 6.91362 7.08442 7.26627 7.54239 7.97817 8.17252 8.39922 8.58482 9.38142 10.10119 10.30812 11.57676 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.004808 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.964892 B = 5821.651845 C = 7920.260054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.069 0.931 4 C -0.129 4.129 5 C 0.107 3.893 6 N -0.607 5.607 7 C 0.514 3.486 8 O -0.501 6.501 9 C -0.048 4.048 10 C 0.250 3.750 11 N -0.534 5.534 12 C 0.263 3.737 13 N -0.483 5.483 14 H 0.441 0.559 15 N -0.304 5.304 16 C 0.138 3.862 17 H 0.069 0.931 18 C 0.169 3.831 19 N -0.761 5.761 20 C -0.227 4.227 21 H 0.089 0.911 22 C -0.001 4.001 23 N -0.940 5.940 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.278 1.278 28 C -0.122 4.122 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.222 0.778 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.354 0.646 42 H 0.257 0.743 43 H 0.070 0.930 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -1.599 -25.555 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.167 4.167 5 C -0.016 4.016 6 N -0.343 5.343 7 C 0.300 3.700 8 O -0.374 6.374 9 C -0.091 4.091 10 C -0.034 4.034 11 N -0.262 5.262 12 C -0.036 4.036 13 N -0.201 5.201 14 H 0.287 0.713 15 N -0.133 5.133 16 C 0.035 3.965 17 H 0.087 0.913 18 C 0.043 3.957 19 N -0.409 5.409 20 C -0.358 4.358 21 H 0.107 0.893 22 C -0.196 4.196 23 N -0.589 5.589 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.160 4.160 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.239 0.761 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.187 0.813 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.535 -1.500 -24.894 25.068 hybrid contribution -0.121 0.739 0.341 0.823 sum 2.414 -0.760 -24.553 24.683 Atomic orbital electron populations 1.21812 0.95093 1.01903 1.01492 1.21167 0.95751 0.99498 0.94913 0.91230 1.21980 0.94782 1.01716 0.98249 1.21754 0.94687 0.99387 0.85768 1.48051 1.43483 1.35630 1.07106 1.20150 0.79555 0.79923 0.90412 1.90895 1.59836 1.54781 1.31885 1.19972 0.96885 0.94372 0.97832 1.23294 0.90274 0.92188 0.97618 1.70344 1.28897 1.02974 1.23986 1.26050 0.82856 0.99075 0.95661 1.48058 1.12319 1.04631 1.55134 0.71345 1.77967 1.11825 0.99064 1.24437 1.21599 0.93656 0.97737 0.83482 0.91291 1.21259 0.97485 0.94729 0.82223 1.42958 1.66950 1.27619 1.03342 1.19075 1.28317 1.05415 0.82952 0.89288 1.24652 1.01250 0.98478 0.95231 1.69707 1.51653 1.40381 0.97145 0.86561 0.80475 0.84985 0.76662 1.21196 1.21878 1.20466 1.22026 0.94791 1.01736 0.97478 0.92634 0.92518 0.92962 0.90870 0.91237 0.91248 0.89810 0.86367 0.86807 0.76146 0.93437 0.93720 0.81320 0.93302 0.91168 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.09 -1.04 2.68 -90.56 -0.24 -1.28 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.14 5.36 -26.61 -0.14 -1.28 16 5 C 0.11 0.95 6.33 -3.71 -0.02 0.93 16 6 N -0.61 -8.32 2.97 -165.21 -0.49 -8.81 16 7 C 0.51 8.01 7.60 -10.98 -0.08 7.93 16 8 O -0.50 -10.44 11.44 5.56 0.06 -10.37 16 9 C -0.05 -0.55 4.74 -29.03 -0.14 -0.69 16 10 C 0.25 3.52 6.63 -156.85 -1.04 2.48 16 11 N -0.53 -7.35 11.19 -11.98 -0.13 -7.48 16 12 C 0.26 2.57 13.13 -90.66 -1.19 1.38 16 13 N -0.48 -4.85 7.45 29.53 0.22 -4.63 16 14 H 0.44 2.65 8.96 -182.34 -1.63 1.02 16 15 N -0.30 -4.28 12.80 32.42 0.41 -3.86 16 16 C 0.14 2.32 3.04 -67.60 -0.21 2.12 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C 0.17 3.82 4.10 -4.04 -0.02 3.80 16 19 N -0.76 -19.69 5.09 -59.91 -0.30 -19.99 16 20 C -0.23 -6.98 10.47 -15.06 -0.16 -7.14 16 21 H 0.09 2.99 8.06 -52.48 -0.42 2.57 16 22 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 23 N -0.94 -31.10 13.97 55.49 0.78 -30.33 16 24 Si 0.88 23.06 27.73 -169.99 -4.71 18.35 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 28 C -0.12 -1.85 4.41 -26.59 -0.12 -1.96 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.52 5.96 -51.93 -0.31 0.21 16 36 H 0.12 1.05 7.46 -51.93 -0.39 0.66 16 37 H 0.11 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.22 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.05 1.20 6.45 -51.93 -0.33 0.86 16 40 H 0.04 1.12 7.04 -51.93 -0.37 0.75 16 41 H 0.35 8.69 4.64 -40.82 -0.19 8.50 16 42 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.31 7.19 -51.93 -0.37 0.93 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -40.78 350.07 -9.84 -50.62 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.83 Total: 6.23 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.11 Total: 5.01 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: 0.48 Total: -75.11 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.06 Total: -10.37 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.71 Total: 18.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -40.78 -9.84 -50.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691851431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.236 kcal (2) G-P(sol) polarization free energy of solvation -40.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds