Wall clock time and date at job start Fri Apr 10 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45918 * 2 1 4 4 C 1.53035 * 109.45833 * 240.02819 * 2 1 3 5 5 C 1.53196 * 109.31213 * 178.61396 * 4 2 1 6 6 N 1.46932 * 108.77183 * 54.63300 * 5 4 2 7 7 C 1.34785 * 120.62586 * 126.37159 * 6 5 4 8 8 O 1.21281 * 119.99529 * 185.45035 * 7 6 5 9 9 C 1.50698 * 119.99997 * 5.45147 * 7 6 5 10 10 C 1.50702 * 109.46766 * 180.02562 * 9 7 6 11 11 N 1.33240 * 125.52726 * 90.00345 * 10 9 7 12 12 C 1.30831 * 109.82954 * 180.02562 * 11 10 9 13 13 N 1.34427 * 108.07723 * 359.97438 * 12 11 10 14 14 H 0.96999 * 126.81885 * 180.02562 * 13 12 11 15 15 N 1.30712 * 125.52724 * 269.69453 * 10 9 7 16 16 C 1.46926 * 118.74150 * 306.39287 * 6 5 4 17 17 H 1.09003 * 109.58202 * 293.67803 * 16 6 5 18 18 C 1.53001 * 109.58477 * 173.39789 * 16 6 5 19 19 N 1.46499 * 109.46722 * 179.97438 * 18 16 6 20 20 C 1.36935 * 119.99940 * 174.98434 * 19 18 16 21 21 H 1.08008 * 120.00168 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00332 * 179.72540 * 20 19 18 23 23 N 1.31615 * 120.00073 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99505 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47472 * 90.00225 * 24 22 20 26 26 H 1.48510 * 109.46600 * 210.00008 * 24 22 20 27 27 H 1.48502 * 109.47066 * 329.99565 * 24 22 20 28 28 C 1.53075 * 109.45000 * 119.81427 * 2 1 3 29 29 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47039 * 299.97321 * 1 2 3 31 31 H 1.09003 * 109.47368 * 59.97189 * 1 2 3 32 32 H 1.08997 * 109.50098 * 58.66289 * 4 2 1 33 33 H 1.09003 * 109.52325 * 298.58195 * 4 2 1 34 34 H 1.08992 * 109.58829 * 294.84990 * 5 4 2 35 35 H 1.09000 * 109.58718 * 174.41953 * 5 4 2 36 36 H 1.08995 * 109.47096 * 300.00070 * 9 7 6 37 37 H 1.08994 * 109.47174 * 60.00324 * 9 7 6 38 38 H 1.08001 * 125.96195 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47208 * 59.95676 * 18 16 6 40 40 H 1.09001 * 109.47065 * 299.95466 * 18 16 6 41 41 H 0.96995 * 120.00377 * 354.97598 * 19 18 16 42 42 H 0.97003 * 119.99777 * 179.97438 * 23 22 20 43 43 H 1.08996 * 109.38861 * 61.37125 * 28 2 1 44 44 H 1.09000 * 109.62849 * 301.25944 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0678 -1.2488 0.0002 7 6 4.9614 -2.2578 0.0003 8 8 5.2889 -2.7777 1.0460 9 6 5.5536 -2.7400 -1.2989 10 6 6.5159 -3.8669 -1.0247 11 7 6.2019 -5.1612 -0.9868 12 6 7.2699 -5.8694 -0.7235 13 7 8.3069 -5.0251 -0.5858 14 1 9.2266 -5.2614 -0.3882 15 7 7.7950 -3.7335 -0.7910 16 6 3.5713 -0.6884 1.2644 17 1 3.9164 0.3403 1.3685 18 6 4.0912 -1.5248 2.4354 19 7 3.5952 -0.9636 3.6944 20 6 3.8465 -1.6068 4.8768 21 1 4.4101 -2.5281 4.8812 22 6 3.3815 -1.0721 6.0705 23 7 3.6227 -1.6906 7.2069 24 14 2.4133 0.5255 6.0636 25 1 0.9658 0.2265 5.9215 26 1 2.6461 1.2507 7.3385 27 1 2.8587 1.3693 4.9257 28 6 2.0398 -0.7176 1.2523 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 1.6572 -0.2210 -2.1398 33 1 1.6977 -1.7558 -1.2387 34 1 3.9143 0.3407 -1.3674 35 1 3.9417 -1.2847 -2.0983 36 1 4.7564 -3.0943 -1.9522 37 1 6.0829 -1.9196 -1.7835 38 1 7.3113 -6.9448 -0.6325 39 1 5.1811 -1.5116 2.4357 40 1 3.7403 -2.5517 2.3324 41 1 3.0888 -0.1363 3.6905 42 1 3.2980 -1.3167 8.0410 43 1 1.6957 -1.7518 1.2420 44 1 1.6593 -0.2160 2.1422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691851431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:58:23 Heat of formation + Delta-G solvation = 48.773648 kcal Electronic energy + Delta-G solvation = -26065.268395 eV Core-core repulsion = 22440.130729 eV Total energy + Delta-G solvation = -3625.137666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.06973 -41.56743 -38.75829 -36.87916 -34.98873 -34.49700 -33.80674 -32.68354 -31.87895 -30.25948 -28.85812 -27.43313 -24.76623 -24.31436 -23.74530 -22.92394 -21.84099 -21.10357 -20.13848 -19.57860 -19.20568 -17.99266 -17.18328 -16.77349 -16.49037 -16.15653 -16.05322 -15.65333 -15.46216 -15.12001 -14.93618 -14.57673 -14.51483 -14.39610 -14.07323 -13.85053 -13.61836 -13.15492 -13.02685 -12.93955 -12.84451 -12.71641 -12.51911 -12.21022 -12.04223 -11.91498 -11.80230 -11.36503 -11.24651 -11.13197 -11.05614 -11.01641 -10.77050 -10.18726 -9.62231 -9.24466 -8.05687 -5.39955 0.65531 1.32413 1.39343 1.46612 1.64924 1.65950 1.86135 2.18019 2.45834 3.16480 3.24471 3.50340 3.67127 3.75019 3.80781 3.86186 3.96615 4.12332 4.16706 4.26185 4.31701 4.41539 4.52579 4.60674 4.70580 4.72171 4.80850 4.93112 4.96837 5.10631 5.14721 5.18685 5.23922 5.25468 5.30962 5.37243 5.42375 5.58457 5.66510 5.71423 6.17263 6.26239 6.46053 7.02840 7.10504 7.24096 7.78297 8.03154 9.17053 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.004808 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.964892 B = 5821.651845 C = 7920.260054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.099 3.901 6 N -0.602 5.602 7 C 0.506 3.494 8 O -0.568 6.568 9 C -0.038 4.038 10 C 0.232 3.768 11 N -0.575 5.575 12 C 0.272 3.728 13 N -0.477 5.477 14 H 0.457 0.543 15 N -0.341 5.341 16 C 0.147 3.853 17 H 0.080 0.920 18 C 0.182 3.818 19 N -0.757 5.757 20 C -0.236 4.236 21 H 0.036 0.964 22 C -0.066 4.066 23 N -0.988 5.988 24 Si 0.964 3.036 25 H -0.271 1.271 26 H -0.290 1.290 27 H -0.249 1.249 28 C -0.117 4.117 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.271 0.729 39 H 0.017 0.983 40 H 0.010 0.990 41 H 0.365 0.635 42 H 0.260 0.740 43 H 0.047 0.953 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 0.670 -29.094 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.102 0.898 4 C -0.162 4.162 5 C -0.022 4.022 6 N -0.336 5.336 7 C 0.294 3.706 8 O -0.447 6.447 9 C -0.080 4.080 10 C -0.052 4.052 11 N -0.304 5.304 12 C -0.026 4.026 13 N -0.196 5.196 14 H 0.305 0.695 15 N -0.172 5.172 16 C 0.043 3.957 17 H 0.098 0.902 18 C 0.057 3.943 19 N -0.405 5.405 20 C -0.367 4.367 21 H 0.055 0.945 22 C -0.257 4.257 23 N -0.638 5.638 24 Si 0.790 3.210 25 H -0.196 1.196 26 H -0.216 1.216 27 H -0.173 1.173 28 C -0.156 4.156 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.286 0.714 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.199 0.801 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.266 0.785 -28.521 28.559 hybrid contribution 0.372 -0.143 1.481 1.534 sum 1.638 0.641 -27.039 27.096 Atomic orbital electron populations 1.21798 0.94310 1.01703 1.02310 1.21166 0.96362 0.99773 0.93490 0.89821 1.21994 0.94490 1.01353 0.98404 1.22231 0.94878 1.01111 0.83972 1.48165 1.42713 1.34986 1.07732 1.20957 0.79113 0.79403 0.91141 1.90876 1.62087 1.57119 1.34592 1.20073 0.97507 0.94820 0.95612 1.23766 0.90673 0.93050 0.97675 1.70333 1.30830 1.03381 1.25852 1.26985 0.81759 1.00723 0.93176 1.48009 1.13344 1.03659 1.54605 0.69490 1.77843 1.12358 1.01341 1.25620 1.21284 0.94824 0.96743 0.82849 0.90215 1.21036 0.95585 0.94171 0.83537 1.42850 1.66955 1.27715 1.02991 1.18914 1.28079 1.04307 0.85399 0.94543 1.25625 1.02586 1.03241 0.94229 1.69920 1.53022 1.42783 0.98087 0.85284 0.78846 0.79285 0.77634 1.19646 1.21632 1.17320 1.21965 0.93235 1.00908 0.99491 0.93395 0.93525 0.90319 0.87090 0.92175 0.88925 0.86355 0.83326 0.83649 0.71409 0.96514 0.97145 0.80109 0.93163 0.93417 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 2 C -0.09 -1.68 2.68 -10.76 -0.03 -1.71 16 3 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.12 -1.65 5.36 30.67 0.16 -1.49 16 5 C 0.10 1.33 6.33 86.36 0.55 1.88 16 6 N -0.60 -15.73 2.97 -795.00 -2.36 -18.09 16 7 C 0.51 15.85 7.60 87.66 0.67 16.52 16 8 O -0.57 -25.34 11.44 -3.03 -0.03 -25.38 16 9 C -0.04 -0.82 4.74 29.10 0.14 -0.68 16 10 C 0.23 6.49 6.63 138.63 0.92 7.41 16 11 N -0.57 -15.68 11.19 -191.80 -2.15 -17.83 16 12 C 0.27 5.07 13.13 180.36 2.37 7.44 16 13 N -0.48 -9.38 7.45 -60.49 -0.45 -9.83 16 14 H 0.46 5.25 8.96 -213.10 -1.91 3.34 16 15 N -0.34 -9.66 12.80 -51.33 -0.66 -10.32 16 16 C 0.15 4.92 3.04 44.97 0.14 5.06 16 17 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 18 C 0.18 8.75 4.10 86.38 0.35 9.11 16 19 N -0.76 -40.62 5.09 -343.44 -1.75 -42.37 16 20 C -0.24 -15.31 10.47 84.03 0.88 -14.43 16 21 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 23 N -0.99 -67.80 13.97 21.65 0.30 -67.50 16 24 Si 0.96 47.95 27.73 68.60 1.90 49.85 16 25 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 27 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 28 C -0.12 -3.48 4.41 30.68 0.14 -3.35 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 0.84 5.96 -2.39 -0.01 0.83 16 36 H 0.15 2.18 7.46 -2.39 -0.02 2.16 16 37 H 0.15 2.11 8.12 -2.39 -0.02 2.09 16 38 H 0.27 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.02 0.92 6.45 -2.39 -0.02 0.91 16 40 H 0.01 0.57 7.04 -2.39 -0.02 0.55 16 41 H 0.36 17.84 4.64 -92.71 -0.43 17.41 16 42 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.96 7.19 -2.39 -0.02 1.95 16 Total: -1.00 -98.00 350.07 0.84 -97.16 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -1.37 Total: 24.12 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 7.41 Total: 20.19 kcal Atomic # 7 Polarization: -158.88 SS G_CDS: -7.06 Total: -165.94 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.03 Total: -25.38 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.90 Total: 49.85 kcal Total: -98.00 0.84 -97.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691851431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.931 kcal (2) G-P(sol) polarization free energy of solvation -98.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds