Wall clock time and date at job start Fri Apr 10 2020 21:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47086 * 2 1 4 4 N 1.28724 * 126.03400 * 264.62190 * 3 2 1 5 5 N 1.28515 * 110.63681 * 179.97438 * 4 3 2 6 6 C 1.33322 * 109.43699 * 359.72204 * 5 4 3 7 7 C 1.37002 * 106.37510 * 0.43219 * 6 5 4 8 8 C 1.47233 * 127.19212 * 179.84045 * 7 6 5 9 9 O 1.21620 * 119.99956 * 354.05887 * 8 7 6 10 10 N 1.34780 * 120.00196 * 174.05766 * 8 7 6 11 11 C 1.46502 * 119.99923 * 175.64141 * 10 8 7 12 12 C 1.53005 * 110.01486 * 65.19371 * 11 10 8 13 13 N 1.46493 * 109.47159 * 58.76729 * 12 11 10 14 14 C 1.36938 * 119.99964 * 174.91790 * 13 12 11 15 15 H 1.08008 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00287 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99789 * 359.73147 * 16 14 13 18 18 Si 1.86794 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47232 * 60.00034 * 18 16 14 20 20 H 1.48497 * 109.47180 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47373 * 300.00192 * 18 16 14 22 22 C 1.54263 * 110.02708 * 186.58087 * 11 10 8 23 23 C 1.54971 * 104.15698 * 95.75964 * 22 11 10 24 24 C 1.54890 * 102.77903 * 37.88298 * 23 22 11 25 25 C 1.53869 * 110.03216 * 303.79915 * 11 10 8 26 26 H 1.09006 * 109.46978 * 300.00021 * 1 2 3 27 27 H 1.09002 * 109.47630 * 59.99530 * 1 2 3 28 28 H 1.09000 * 109.47971 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46453 * 239.99957 * 2 1 3 30 30 H 1.08997 * 109.47198 * 120.00661 * 2 1 3 31 31 H 1.08006 * 126.81584 * 180.27896 * 6 5 4 32 32 H 0.96995 * 119.99564 * 355.64029 * 10 8 7 33 33 H 1.09002 * 109.46702 * 298.76616 * 12 11 10 34 34 H 1.08993 * 109.46668 * 178.76940 * 12 11 10 35 35 H 0.96997 * 120.00701 * 354.92192 * 13 12 11 36 36 H 0.96993 * 120.00099 * 179.97438 * 17 16 14 37 37 H 1.09003 * 110.48644 * 214.39641 * 22 11 10 38 38 H 1.08992 * 110.49335 * 337.04952 * 22 11 10 39 39 H 1.08998 * 110.71435 * 279.57083 * 23 22 11 40 40 H 1.09000 * 110.76234 * 156.22089 * 23 22 11 41 41 H 1.08998 * 110.48675 * 203.40696 * 24 23 22 42 42 H 1.09000 * 110.48582 * 80.75999 * 24 23 22 43 43 H 1.09002 * 110.03590 * 359.95563 * 25 11 10 44 44 H 1.09005 * 110.03302 * 121.38112 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3627 2.0626 -1.0364 5 7 2.7450 3.2416 -0.6967 6 6 2.6527 3.3738 0.6267 7 6 2.1885 2.1761 1.1031 8 6 1.9221 1.8196 2.5066 9 8 2.2164 2.5939 3.3971 10 7 1.3521 0.6351 2.8045 11 6 1.1743 0.2391 4.2037 12 6 0.1883 1.1837 4.8941 13 7 -1.0964 1.1475 4.1910 14 6 -2.1698 1.8358 4.6902 15 1 -2.0691 2.4058 5.6021 16 6 -3.3870 1.8020 4.0238 17 7 -3.5080 1.1125 2.9092 18 14 -4.8509 2.7416 4.7045 19 1 -4.5212 4.1877 4.7759 20 1 -6.0232 2.5440 3.8145 21 1 -5.1725 2.2395 6.0646 22 6 0.6575 -1.2123 4.2804 23 6 1.9381 -2.0602 4.4874 24 6 2.7874 -1.1732 5.4314 25 6 2.5280 0.2641 4.9347 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.8979 4.2503 1.2082 32 1 1.0597 0.0450 2.0925 33 1 0.5842 2.1991 4.8754 34 1 0.0459 0.8682 5.9276 35 1 -1.1869 0.6359 3.3719 36 1 -4.3586 1.0886 2.4437 37 1 -0.0198 -1.3320 5.1261 38 1 0.1612 -1.4903 3.3507 39 1 2.4527 -2.2190 3.5398 40 1 1.6989 -3.0116 4.9627 41 1 3.8445 -1.4231 5.3411 42 1 2.4544 -1.2861 6.4631 43 1 3.3175 0.5701 4.2483 44 1 2.4827 0.9492 5.7813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698629295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:58:58 Heat of formation + Delta-G solvation = 77.683648 kcal Electronic energy + Delta-G solvation = -27067.468369 eV Core-core repulsion = 23443.584334 eV Total energy + Delta-G solvation = -3623.884035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.29018 -40.21019 -37.63303 -35.96970 -34.37525 -33.21236 -31.50119 -30.94627 -30.80906 -28.75584 -28.11040 -24.98347 -24.56533 -23.57822 -22.32287 -22.15115 -20.97916 -20.42194 -19.28338 -17.97256 -17.16709 -16.75332 -16.34603 -16.10786 -15.17548 -15.13257 -14.66426 -14.42370 -14.42055 -14.00372 -13.65207 -13.26905 -13.16636 -13.04847 -12.76990 -12.36323 -12.08611 -11.95877 -11.73907 -11.67594 -11.28009 -11.08137 -11.05111 -11.01046 -10.84306 -10.78153 -10.60086 -10.51848 -10.23495 -10.12713 -9.85964 -9.71196 -9.40466 -8.87825 -8.78747 -6.91973 -5.80201 -3.06353 1.00092 2.06715 2.38486 3.09169 3.30122 3.43014 3.47403 3.48716 4.04148 4.36457 4.50919 4.55275 4.62568 4.71405 4.74962 4.88069 4.96426 5.11840 5.30091 5.41379 5.43968 5.48996 5.55248 5.56601 5.64034 5.67436 5.76280 5.84177 5.91928 6.04783 6.07425 6.10440 6.18400 6.23887 6.33627 6.39297 6.42327 6.47494 6.77668 6.97589 7.53040 7.69239 8.22732 8.37314 8.39541 9.51324 10.07474 10.43307 11.43030 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.005994 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.718809 B = 4669.903094 C = 5992.418018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 N -0.271 5.271 4 N -0.061 5.061 5 N -0.278 5.278 6 C 0.024 3.976 7 C -0.064 4.064 8 C 0.599 3.401 9 O -0.508 6.508 10 N -0.711 5.711 11 C 0.167 3.833 12 C 0.143 3.857 13 N -0.726 5.726 14 C -0.233 4.233 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.937 5.937 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.118 4.118 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.201 0.799 32 H 0.394 0.606 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.380 0.620 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.324 -8.409 -2.429 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 N -0.071 5.071 4 N -0.042 5.042 5 N -0.141 5.141 6 C -0.135 4.135 7 C -0.197 4.197 8 C 0.382 3.618 9 O -0.381 6.381 10 N -0.367 5.367 11 C 0.081 3.919 12 C 0.015 3.985 13 N -0.370 5.370 14 C -0.364 4.364 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.586 5.586 18 Si 0.737 3.263 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.156 4.156 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.157 4.157 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.218 0.782 32 H 0.233 0.767 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.213 0.787 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.580 -7.790 -3.173 15.974 hybrid contribution -1.374 0.053 0.772 1.577 sum 12.206 -7.736 -2.401 14.649 Atomic orbital electron populations 1.22372 0.91136 1.05150 1.05598 1.22458 0.97602 0.76465 1.06005 1.47981 1.41270 1.13294 1.04557 1.78161 1.14087 1.00110 1.11846 1.74922 1.17596 1.09002 1.12594 1.23796 1.00752 0.97747 0.91229 1.22499 1.12617 0.94448 0.90105 1.16628 0.78189 0.82015 0.84974 1.90829 1.52115 1.49140 1.46000 1.46536 1.61551 1.19447 1.09202 1.21390 0.95418 0.95154 0.79914 1.21184 0.86003 0.97000 0.94280 1.42182 1.05811 1.60062 1.28992 1.19190 0.88886 1.22485 1.05858 0.91313 1.24664 0.97807 1.00901 0.97573 1.69609 1.24944 1.45878 1.18163 0.86277 0.82397 0.79727 0.77872 1.21357 1.21774 1.21325 1.22618 0.97305 0.92062 1.03602 1.22564 0.96162 0.98307 0.99347 1.22386 0.99461 0.94841 0.99504 1.22425 0.95869 0.96861 1.00549 0.89751 0.90498 0.88735 0.86420 0.87821 0.78231 0.76656 0.94233 0.95174 0.78718 0.93648 0.89051 0.91176 0.92011 0.91363 0.91916 0.91338 0.91477 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.62 37.16 0.36 -1.67 16 2 C 0.10 0.91 6.25 -4.05 -0.03 0.89 16 3 N -0.27 -3.69 3.39 -57.38 -0.19 -3.88 16 4 N -0.06 -0.94 13.14 60.35 0.79 -0.15 16 5 N -0.28 -4.51 12.35 30.47 0.38 -4.14 16 6 C 0.02 0.38 11.87 -17.35 -0.21 0.17 16 7 C -0.06 -0.98 6.98 -82.33 -0.57 -1.56 16 8 C 0.60 9.93 6.85 -12.60 -0.09 9.84 16 9 O -0.51 -9.71 14.14 5.26 0.07 -9.64 16 10 N -0.71 -10.42 4.30 -47.69 -0.21 -10.63 16 11 C 0.17 2.53 0.56 -130.70 -0.07 2.45 16 12 C 0.14 2.87 4.66 -4.04 -0.02 2.86 16 13 N -0.73 -17.46 5.24 -59.91 -0.31 -17.78 16 14 C -0.23 -6.41 9.99 -15.06 -0.15 -6.56 16 15 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.94 -27.05 13.06 55.49 0.72 -26.33 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.12 -1.55 5.56 -25.03 -0.14 -1.69 16 23 C -0.13 -1.28 6.91 -24.69 -0.17 -1.45 16 24 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 25 C -0.12 -1.58 5.21 -25.62 -0.13 -1.71 16 26 H 0.08 1.24 7.10 -51.93 -0.37 0.88 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.83 6.04 -51.93 -0.31 0.51 16 31 H 0.20 2.64 8.06 -52.48 -0.42 2.22 16 32 H 0.39 4.97 2.82 -40.82 -0.12 4.85 16 33 H 0.04 0.89 6.48 -51.93 -0.34 0.56 16 34 H 0.03 0.61 8.12 -51.93 -0.42 0.18 16 35 H 0.38 9.24 7.20 -40.82 -0.29 8.94 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 37 H 0.09 1.35 7.84 -51.93 -0.41 0.94 16 38 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.93 6.97 -51.93 -0.36 0.56 16 44 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -32.91 352.44 -6.29 -39.20 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.34 Total: 11.08 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.49 Total: -0.40 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 1.18 Total: -62.90 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.91 -6.29 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698629295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.882 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds