Wall clock time and date at job start Fri Apr 10 2020 21:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47086 * 2 1 4 4 N 1.28724 * 126.03400 * 264.62190 * 3 2 1 5 5 N 1.28515 * 110.63681 * 179.97438 * 4 3 2 6 6 C 1.33322 * 109.43699 * 359.72204 * 5 4 3 7 7 C 1.37002 * 106.37510 * 0.43219 * 6 5 4 8 8 C 1.47233 * 127.19212 * 179.84045 * 7 6 5 9 9 O 1.21620 * 119.99956 * 354.05887 * 8 7 6 10 10 N 1.34780 * 120.00196 * 174.05766 * 8 7 6 11 11 C 1.46502 * 119.99923 * 175.64141 * 10 8 7 12 12 C 1.53005 * 110.01486 * 65.19371 * 11 10 8 13 13 N 1.46493 * 109.47159 * 58.76729 * 12 11 10 14 14 C 1.36938 * 119.99964 * 174.91790 * 13 12 11 15 15 H 1.08008 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00287 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99789 * 359.73147 * 16 14 13 18 18 Si 1.86794 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47232 * 60.00034 * 18 16 14 20 20 H 1.48497 * 109.47180 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47373 * 300.00192 * 18 16 14 22 22 C 1.54263 * 110.02708 * 186.58087 * 11 10 8 23 23 C 1.54971 * 104.15698 * 95.75964 * 22 11 10 24 24 C 1.54890 * 102.77903 * 37.88298 * 23 22 11 25 25 C 1.53869 * 110.03216 * 303.79915 * 11 10 8 26 26 H 1.09006 * 109.46978 * 300.00021 * 1 2 3 27 27 H 1.09002 * 109.47630 * 59.99530 * 1 2 3 28 28 H 1.09000 * 109.47971 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46453 * 239.99957 * 2 1 3 30 30 H 1.08997 * 109.47198 * 120.00661 * 2 1 3 31 31 H 1.08006 * 126.81584 * 180.27896 * 6 5 4 32 32 H 0.96995 * 119.99564 * 355.64029 * 10 8 7 33 33 H 1.09002 * 109.46702 * 298.76616 * 12 11 10 34 34 H 1.08993 * 109.46668 * 178.76940 * 12 11 10 35 35 H 0.96997 * 120.00701 * 354.92192 * 13 12 11 36 36 H 0.96993 * 120.00099 * 179.97438 * 17 16 14 37 37 H 1.09003 * 110.48644 * 214.39641 * 22 11 10 38 38 H 1.08992 * 110.49335 * 337.04952 * 22 11 10 39 39 H 1.08998 * 110.71435 * 279.57083 * 23 22 11 40 40 H 1.09000 * 110.76234 * 156.22089 * 23 22 11 41 41 H 1.08998 * 110.48675 * 203.40696 * 24 23 22 42 42 H 1.09000 * 110.48582 * 80.75999 * 24 23 22 43 43 H 1.09002 * 110.03590 * 359.95563 * 25 11 10 44 44 H 1.09005 * 110.03302 * 121.38112 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3627 2.0626 -1.0364 5 7 2.7450 3.2416 -0.6967 6 6 2.6527 3.3738 0.6267 7 6 2.1885 2.1761 1.1031 8 6 1.9221 1.8196 2.5066 9 8 2.2164 2.5939 3.3971 10 7 1.3521 0.6351 2.8045 11 6 1.1743 0.2391 4.2037 12 6 0.1883 1.1837 4.8941 13 7 -1.0964 1.1475 4.1910 14 6 -2.1698 1.8358 4.6902 15 1 -2.0691 2.4058 5.6021 16 6 -3.3870 1.8020 4.0238 17 7 -3.5080 1.1125 2.9092 18 14 -4.8509 2.7416 4.7045 19 1 -4.5212 4.1877 4.7759 20 1 -6.0232 2.5440 3.8145 21 1 -5.1725 2.2395 6.0646 22 6 0.6575 -1.2123 4.2804 23 6 1.9381 -2.0602 4.4874 24 6 2.7874 -1.1732 5.4314 25 6 2.5280 0.2641 4.9347 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.8979 4.2503 1.2082 32 1 1.0597 0.0450 2.0925 33 1 0.5842 2.1991 4.8754 34 1 0.0459 0.8682 5.9276 35 1 -1.1869 0.6359 3.3719 36 1 -4.3586 1.0886 2.4437 37 1 -0.0198 -1.3320 5.1261 38 1 0.1612 -1.4903 3.3507 39 1 2.4527 -2.2190 3.5398 40 1 1.6989 -3.0116 4.9627 41 1 3.8445 -1.4231 5.3411 42 1 2.4544 -1.2861 6.4631 43 1 3.3175 0.5701 4.2483 44 1 2.4827 0.9492 5.7813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698629295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:58:57 Heat of formation + Delta-G solvation = 54.759895 kcal Electronic energy + Delta-G solvation = -27068.462417 eV Core-core repulsion = 23443.584334 eV Total energy + Delta-G solvation = -3624.878083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.45650 -41.47542 -38.87766 -37.00590 -36.17219 -34.49868 -33.13057 -32.31791 -31.96333 -29.82763 -29.51656 -26.46215 -25.87546 -24.77583 -24.00862 -23.28214 -22.07582 -21.44227 -20.57245 -19.16944 -19.08047 -17.90355 -17.51908 -17.37740 -16.60478 -16.22036 -16.17818 -15.81073 -15.60656 -15.32464 -15.03158 -14.80847 -14.51672 -14.10660 -14.05058 -13.56520 -13.33096 -13.23851 -13.17890 -12.80082 -12.73847 -12.66743 -12.30880 -12.22831 -12.15484 -11.98001 -11.90989 -11.81892 -11.73116 -11.39230 -11.33402 -11.23681 -10.86435 -10.63628 -10.11132 -8.95582 -7.95894 -5.21174 -0.20300 1.04500 1.16139 1.44800 1.46794 1.52298 1.84103 2.04076 2.54453 3.01624 3.35588 3.41346 3.49137 3.67570 3.70591 3.71889 3.88910 3.93768 4.04679 4.16624 4.23097 4.39252 4.50952 4.55649 4.59331 4.66769 4.69787 4.76717 4.83857 4.91351 4.92269 5.08922 5.11510 5.14927 5.20540 5.26603 5.27959 5.34915 5.47957 5.51071 5.58227 6.26086 6.31050 6.96355 7.17518 7.35191 8.08170 8.37126 9.26380 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.005994 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.718809 B = 4669.903094 C = 5992.418018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 N -0.258 5.258 4 N -0.065 5.065 5 N -0.298 5.298 6 C 0.019 3.981 7 C -0.078 4.078 8 C 0.597 3.403 9 O -0.540 6.540 10 N -0.700 5.700 11 C 0.169 3.831 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.245 4.245 15 H 0.064 0.936 16 C -0.065 4.065 17 N -0.958 5.958 18 Si 0.964 3.036 19 H -0.288 1.288 20 H -0.293 1.293 21 H -0.277 1.277 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.114 4.114 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.124 0.876 31 H 0.213 0.787 32 H 0.404 0.596 33 H 0.012 0.988 34 H 0.030 0.970 35 H 0.377 0.623 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.089 -10.495 -2.628 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 N -0.058 5.058 4 N -0.046 5.046 5 N -0.161 5.161 6 C -0.141 4.141 7 C -0.212 4.212 8 C 0.381 3.619 9 O -0.416 6.416 10 N -0.356 5.356 11 C 0.084 3.916 12 C 0.016 3.984 13 N -0.372 5.372 14 C -0.377 4.377 15 H 0.082 0.918 16 C -0.258 4.258 17 N -0.608 5.608 18 Si 0.793 3.207 19 H -0.215 1.215 20 H -0.219 1.219 21 H -0.204 1.204 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.156 4.156 25 C -0.153 4.153 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.172 0.828 30 H 0.142 0.858 31 H 0.230 0.770 32 H 0.246 0.754 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.210 0.790 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.357 -9.910 -3.376 17.768 hybrid contribution -1.629 0.720 0.848 1.973 sum 12.727 -9.190 -2.528 15.901 Atomic orbital electron populations 1.22328 0.92095 1.06302 1.03015 1.22894 0.96610 0.74799 1.08818 1.48282 1.39885 1.14189 1.03481 1.78084 1.14147 1.00142 1.12240 1.74904 1.18609 1.09646 1.12941 1.24117 1.00372 0.98380 0.91211 1.22390 1.13605 0.95073 0.90095 1.16797 0.77866 0.82084 0.85131 1.90811 1.53619 1.50137 1.46998 1.46469 1.60650 1.19082 1.09428 1.21358 0.95275 0.95156 0.79852 1.21236 0.85510 0.96956 0.94660 1.42237 1.06457 1.59460 1.29050 1.19486 0.90090 1.22400 1.05714 0.91792 1.25344 1.00077 1.02198 0.98173 1.69729 1.25131 1.46985 1.19000 0.85365 0.79431 0.78313 0.77556 1.21513 1.21854 1.20357 1.22589 0.98774 0.91027 1.03085 1.22546 0.94012 0.98179 1.00397 1.22383 1.00956 0.92493 0.99719 1.22370 0.94370 0.98863 0.99710 0.93765 0.91500 0.85757 0.82785 0.85820 0.77024 0.75389 0.97023 0.95240 0.79005 0.94071 0.90843 0.90788 0.90028 0.89461 0.89772 0.90993 0.91766 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 9.62 71.98 0.69 -2.99 16 2 C 0.09 1.46 6.25 86.38 0.54 2.00 16 3 N -0.26 -6.70 3.39 -335.45 -1.14 -7.84 16 4 N -0.07 -1.94 13.14 37.02 0.49 -1.46 16 5 N -0.30 -9.62 12.35 -57.50 -0.71 -10.33 16 6 C 0.02 0.60 11.87 84.18 1.00 1.60 16 7 C -0.08 -2.40 6.98 40.41 0.28 -2.12 16 8 C 0.60 19.92 6.85 86.61 0.59 20.52 16 9 O -0.54 -21.23 14.14 -4.10 -0.06 -21.29 16 10 N -0.70 -20.14 4.30 -423.05 -1.82 -21.96 16 11 C 0.17 5.05 0.56 4.33 0.00 5.06 16 12 C 0.14 5.91 4.66 86.38 0.40 6.31 16 13 N -0.73 -35.72 5.24 -343.45 -1.80 -37.52 16 14 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 15 H 0.06 3.56 7.83 -2.91 -0.02 3.53 16 16 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 17 N -0.96 -55.71 13.06 21.65 0.28 -55.43 16 18 Si 0.96 46.22 29.55 68.60 2.03 48.25 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 C -0.12 -2.88 5.56 31.70 0.18 -2.71 16 23 C -0.11 -1.90 6.91 31.91 0.22 -1.68 16 24 C -0.12 -2.15 6.83 31.67 0.22 -1.94 16 25 C -0.11 -2.95 5.21 31.32 0.16 -2.78 16 26 H 0.04 1.29 7.10 -2.38 -0.02 1.27 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.15 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.12 1.59 6.04 -2.39 -0.01 1.58 16 31 H 0.21 5.71 8.06 -2.91 -0.02 5.69 16 32 H 0.40 9.69 2.82 -92.71 -0.26 9.43 16 33 H 0.01 0.56 6.48 -2.39 -0.02 0.54 16 34 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 35 H 0.38 18.65 7.20 -92.71 -0.67 17.98 16 36 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.07 2.10 7.84 -2.39 -0.02 2.08 16 38 H 0.07 1.76 7.70 -2.39 -0.02 1.74 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.70 6.97 -2.39 -0.02 1.69 16 44 H 0.06 1.76 7.67 -2.38 -0.02 1.74 16 Total: -1.00 -72.31 352.44 2.97 -69.34 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.10 Total: 32.99 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.60 Total: 5.24 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -4.70 Total: -134.53 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.06 Total: -21.29 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.31 2.97 -69.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698629295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.104 kcal (2) G-P(sol) polarization free energy of solvation -72.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds