Wall clock time and date at job start Fri Apr 10 2020 21:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46798 * 2 1 4 4 N 1.28518 * 124.44340 * 90.02573 * 3 2 1 5 5 C 1.31142 * 109.05917 * 179.97438 * 4 3 2 6 6 C 1.40925 * 105.77262 * 359.97438 * 5 4 3 7 7 C 1.47803 * 127.23175 * 179.97438 * 6 5 4 8 8 O 1.21558 * 120.00536 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99758 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99981 * 185.27819 * 9 7 6 11 11 C 1.53002 * 109.47060 * 173.97758 * 10 9 7 12 12 C 1.52998 * 109.47250 * 53.97753 * 10 9 7 13 13 N 1.46493 * 109.47113 * 59.99953 * 12 10 9 14 14 C 1.36937 * 120.00150 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99912 * 359.72925 * 14 13 12 16 16 C 1.38808 * 120.00086 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00408 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00158 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46953 * 60.00038 * 18 16 14 20 20 H 1.48496 * 109.47294 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47188 * 300.00275 * 18 16 14 22 22 C 1.53009 * 109.47277 * 293.97629 * 10 9 7 23 23 C 1.53006 * 117.49386 * 3.12200 * 22 10 9 24 24 C 1.53002 * 117.49897 * 294.46670 * 22 10 9 25 25 N 1.28594 * 124.44621 * 270.31345 * 3 2 1 26 26 H 1.08994 * 109.46853 * 60.00304 * 1 2 3 27 27 H 1.09000 * 109.46580 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47082 * 299.99765 * 1 2 3 29 29 H 1.09000 * 109.46934 * 239.99873 * 2 1 3 30 30 H 1.08998 * 109.47330 * 119.99704 * 2 1 3 31 31 H 1.08002 * 127.11216 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00268 * 5.28417 * 9 7 6 33 33 H 1.08993 * 109.47557 * 300.00026 * 11 10 9 34 34 H 1.09000 * 109.47134 * 60.00134 * 11 10 9 35 35 H 1.09007 * 109.47018 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.46946 * 299.99908 * 12 10 9 37 37 H 1.09009 * 109.47226 * 180.02562 * 12 10 9 38 38 H 0.97001 * 120.00357 * 0.02562 * 13 12 10 39 39 H 0.97001 * 120.00464 * 179.97438 * 17 16 14 40 40 H 1.08996 * 115.54798 * 148.79040 * 22 10 9 41 41 H 1.08995 * 117.49593 * 0.02562 * 23 22 10 42 42 H 1.09002 * 117.49512 * 145.02118 * 23 22 10 43 43 H 1.08999 * 117.49763 * 214.97567 * 24 22 10 44 44 H 1.08999 * 117.49579 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0599 5 6 2.6828 3.2584 0.7120 6 6 2.6863 3.2673 -0.6973 7 6 3.0805 4.3825 -1.5835 8 8 3.4531 5.4362 -1.1056 9 7 3.0278 4.2307 -2.9217 10 6 3.5267 5.2922 -3.7995 11 6 3.4910 4.8119 -5.2517 12 6 4.9656 5.6397 -3.4125 13 7 5.8101 4.4512 -3.5546 14 6 7.1462 4.5218 -3.2627 15 1 7.5781 5.4548 -2.9319 16 6 7.9465 3.3957 -3.3979 17 7 7.4214 2.2603 -3.8072 18 14 9.7690 3.4917 -2.9990 19 1 9.9446 3.8883 -1.5787 20 1 10.3955 2.1643 -3.2240 21 1 10.4156 4.4991 -3.8778 22 6 2.6446 6.5336 -3.6511 23 6 1.5152 6.4784 -2.6204 24 6 1.1907 6.4267 -4.1154 25 7 2.2552 2.0689 -1.0604 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9684 4.0662 1.3695 32 1 2.6594 3.4188 -3.3036 33 1 4.1194 3.9276 -5.3576 34 1 2.4660 4.5643 -5.5274 35 1 3.8619 5.6019 -5.9049 36 1 4.9910 5.9819 -2.3779 37 1 5.3367 6.4299 -4.0653 38 1 5.4232 3.6145 -3.8562 39 1 7.9808 1.4735 -3.9020 40 1 3.1496 7.4889 -3.7937 41 1 1.4009 5.5580 -2.0478 42 1 1.2768 7.3976 -2.0853 43 1 0.7390 7.3119 -4.5632 44 1 0.8627 5.4722 -4.5270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698641794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:59:01 Heat of formation + Delta-G solvation = 124.862397 kcal Electronic energy + Delta-G solvation = -26390.054049 eV Core-core repulsion = 22768.215838 eV Total energy + Delta-G solvation = -3621.838211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.51689 -40.16997 -37.07928 -34.94088 -34.87228 -33.39577 -32.52233 -31.27482 -30.33280 -29.41535 -26.02410 -25.14447 -23.89978 -23.47752 -22.03282 -21.50736 -21.30140 -20.52715 -18.86248 -17.71162 -17.23281 -16.91925 -16.50268 -15.82394 -15.34199 -15.08874 -14.38478 -14.35875 -14.25034 -13.73538 -13.64475 -13.23093 -12.98808 -12.80925 -12.50081 -12.11403 -12.07868 -11.87584 -11.73657 -11.65412 -11.25082 -11.02044 -10.90445 -10.80349 -10.74331 -10.68269 -10.29053 -10.17152 -10.06144 -9.86625 -9.60620 -9.37143 -9.29496 -8.72396 -8.53013 -6.77344 -5.67473 -2.93468 1.52850 2.11206 2.17722 3.38495 3.50163 3.53658 3.55444 3.71997 4.01635 4.11149 4.54681 4.62815 4.66626 4.84796 4.92991 5.03053 5.14168 5.18756 5.23436 5.32430 5.39979 5.49948 5.61741 5.66663 5.69635 5.77696 5.82409 5.83978 6.05089 6.10822 6.11812 6.23739 6.34022 6.36671 6.43906 6.61796 6.65276 6.70308 6.97207 7.19880 7.79793 7.89613 8.26510 8.52037 8.62052 9.63277 10.22163 10.57644 11.55690 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.005505 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.835818 B = 5085.219472 C = 6904.185058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.133 3.867 3 N -0.145 5.145 4 N -0.295 5.295 5 C 0.032 3.968 6 C -0.037 4.037 7 C 0.618 3.382 8 O -0.513 6.513 9 N -0.699 5.699 10 C 0.200 3.800 11 C -0.147 4.147 12 C 0.140 3.860 13 N -0.726 5.726 14 C -0.228 4.228 15 H 0.068 0.932 16 C -0.016 4.016 17 N -0.937 5.937 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.287 1.287 22 C -0.143 4.143 23 C -0.158 4.158 24 C -0.186 4.186 25 N -0.248 5.248 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.205 0.795 32 H 0.401 0.599 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.024 0.976 38 H 0.382 0.618 39 H 0.253 0.747 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 -1.299 3.703 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.048 5.048 4 N -0.135 5.135 5 C -0.152 4.152 6 C -0.200 4.200 7 C 0.401 3.599 8 O -0.386 6.386 9 N -0.350 5.350 10 C 0.114 3.886 11 C -0.205 4.205 12 C 0.012 3.988 13 N -0.371 5.371 14 C -0.360 4.360 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.587 5.587 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.214 1.214 22 C -0.163 4.163 23 C -0.195 4.195 24 C -0.223 4.223 25 N -0.096 5.096 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.222 0.778 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.216 0.784 39 H 0.062 0.938 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.986 -1.759 4.081 18.527 hybrid contribution 1.197 0.061 0.007 1.199 sum -16.789 -1.698 4.089 17.363 Atomic orbital electron populations 1.22179 0.93117 1.03837 1.03654 1.22049 0.95925 0.74483 1.06186 1.48169 1.44044 1.13306 0.99251 1.73944 1.18281 1.05518 1.15735 1.24795 1.01342 0.95151 0.93879 1.23260 1.08156 0.93688 0.94909 1.16351 0.77305 0.84633 0.81581 1.90785 1.46254 1.26262 1.75322 1.45800 1.63003 1.21176 1.05053 1.20126 0.93979 0.85011 0.89482 1.21977 1.01449 1.03136 0.93895 1.21114 0.86553 0.91106 1.00009 1.42263 1.05718 1.08107 1.80993 1.19191 0.84784 0.95575 1.36438 0.91374 1.24668 0.97910 0.95786 1.02783 1.69646 1.34736 1.00375 1.53895 0.86295 0.85619 0.76366 0.78126 1.21409 1.21860 1.21350 1.22542 0.89763 0.99337 1.04629 1.22919 1.02450 1.02864 0.91293 1.22984 0.98781 1.02411 0.98130 1.74359 1.15202 1.04363 1.15671 0.91341 0.89598 0.91465 0.87046 0.87233 0.77780 0.76454 0.90694 0.92851 0.90891 0.93011 0.95830 0.78377 0.93761 0.87278 0.89119 0.89472 0.89379 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.13 1.15 7.24 -4.04 -0.03 1.13 16 3 N -0.14 -1.98 3.94 -10.61 -0.04 -2.02 16 4 N -0.30 -4.36 12.01 30.90 0.37 -3.99 16 5 C 0.03 0.50 12.04 -16.83 -0.20 0.29 16 6 C -0.04 -0.62 7.21 -82.68 -0.60 -1.22 16 7 C 0.62 11.28 5.09 -12.35 -0.06 11.21 16 8 O -0.51 -10.38 12.87 5.31 0.07 -10.31 16 9 N -0.70 -11.71 4.19 -48.55 -0.20 -11.92 16 10 C 0.20 3.37 0.55 -131.82 -0.07 3.29 16 11 C -0.15 -2.24 8.19 37.16 0.30 -1.94 16 12 C 0.14 3.02 4.83 -4.05 -0.02 3.00 16 13 N -0.73 -18.77 5.17 -59.91 -0.31 -19.08 16 14 C -0.23 -6.62 9.99 -15.06 -0.15 -6.77 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 17 N -0.94 -28.78 13.06 55.49 0.72 -28.06 16 18 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.14 -2.11 4.82 -90.61 -0.44 -2.55 16 23 C -0.16 -2.24 8.30 -26.69 -0.22 -2.46 16 24 C -0.19 -2.27 9.68 -26.69 -0.26 -2.53 16 25 N -0.25 -3.90 11.85 33.42 0.40 -3.50 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.21 2.70 8.06 -52.49 -0.42 2.28 16 32 H 0.40 6.21 8.26 -40.82 -0.34 5.87 16 33 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 34 H 0.05 0.67 6.96 -51.93 -0.36 0.31 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.24 5.92 -51.93 -0.31 0.93 16 37 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.38 10.21 6.35 -40.82 -0.26 9.95 16 39 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.11 1.59 8.07 -51.93 -0.42 1.17 16 41 H 0.09 1.40 5.09 -51.93 -0.26 1.13 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.05 7.25 -51.93 -0.38 0.67 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -34.56 359.88 -6.51 -41.07 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -6.46 Total: 14.08 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.46 Total: 0.12 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: 0.94 Total: -68.57 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.56 -6.51 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698641794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.936 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds